Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 7.8e-214 746.9 384 100.0
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 6.2e-171 604.4 343 85.1
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.9e-158 560.8 326 82.8
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.3e-155 553.5 348 78.7
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.5e-148 530.0 330 77.6
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.5e-148 529.3 326 77.6
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 5.7e-148 528.1 372 70.2
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.3e-147 526.9 326 77.3
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 3.7e-147 525.4 322 79.2
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 3.7e-147 525.4 328 76.5
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.8e-147 525.0 383 71.5
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.4e-146 523.5 323 78.0
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 9.0e-146 520.8 322 75.8
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.0e-145 519.6 322 76.1
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 2.6e-145 519.2 322 76.4
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.3e-144 516.9 338 71.9
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 3.8e-144 515.4 324 78.7
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.9e-143 513.1 322 77.3
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.9e-143 513.1 323 75.2
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 3.2e-143 512.3 348 72.7
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 3.2e-143 512.3 323 75.5
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 4.2e-143 511.9 323 75.9
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 5.5e-143 511.5 338 73.4
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 7.2e-143 511.1 322 76.4
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.6e-142 508.8 318 77.7
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 3.6e-142 508.8 318 77.7
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 6.1e-142 508.1 322 77.0
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.8e-141 506.5 351 71.8
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 3.0e-141 505.8 323 76.2
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.9e-141 505.4 328 77.1
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 5.1e-141 505.0 384 66.9
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 5.1e-141 505.0 325 75.7
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.1e-141 505.0 344 72.4
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.7e-141 504.6 341 73.6
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 8.8e-141 504.2 321 76.6
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.1e-140 503.8 346 71.7
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.1e-140 503.8 354 69.5
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.5e-140 503.4 337 74.5
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 3.3e-140 502.3 326 73.6
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.3e-140 502.3 326 73.6
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 5.7e-140 501.5 318 75.2
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.7e-139 500.0 321 74.1
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.7e-139 500.0 356 69.7
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.7e-139 498.8 326 73.9
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.2e-139 497.7 275 86.5
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 8.2e-139 497.7 329 73.6
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 8.2e-139 497.7 326 73.3
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.4e-138 496.9 321 74.1
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 3.1e-138 495.7 331 74.6
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.1e-138 495.7 321 73.5
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 4.1e-138 495.4 348 69.5
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 5.3e-138 495.0 336 74.7
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 9.1e-138 494.2 321 73.2
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 1.2e-137 493.8 307 76.5
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 4.5e-137 491.9 326 73.6
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.3e-136 490.3 344 71.2
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 6.1e-134 481.5 325 73.5
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 7.9e-134 481.1 323 73.4
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.0e-133 480.7 324 72.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.4e-133 480.3 335 73.7
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 6.7e-133 478.0 324 71.6
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 6.7e-133 478.0 322 72.4
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.5e-132 476.9 341 67.7
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.6e-132 476.1 321 72.0
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 9.7e-132 474.2 318 74.2
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 2.8e-131 472.6 328 68.9
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 6.3e-131 471.5 346 65.3
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.1e-130 468.8 275 82.2
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.1e-130 468.8 333 72.4
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.3e-130 468.4 307 73.9
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.6e-129 466.8 328 68.0
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 7.7e-129 464.5 334 67.7
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.3e-128 463.8 333 71.2
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.3e-128 463.8 321 69.8
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.9e-128 462.6 322 69.3
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-127 460.7 307 76.2
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.5e-127 460.3 319 69.9
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.9e-127 459.9 339 66.7
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 5.5e-127 458.4 250 86.0
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 9.4e-127 457.6 336 68.8
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 2.1e-126 456.4 322 68.6
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 3.6e-126 455.7 337 66.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.4e-125 453.8 277 78.3
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.4e-125 453.8 307 73.6
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.8e-125 453.4 341 65.4
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 4.0e-125 452.2 331 67.7
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.1e-124 450.7 318 67.9
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-124 450.7 326 66.9
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.1e-124 450.7 334 66.8
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 2.0e-124 449.9 326 66.9
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 2.0e-124 449.9 275 76.4
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.0e-124 449.9 318 68.2
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.6e-124 449.5 321 68.5
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 4.4e-124 448.7 322 68.6
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 4.4e-124 448.7 322 67.1
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 4.4e-124 448.7 349 63.6
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.3e-123 447.2 339 65.5
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.8e-123 445.3 353 63.7
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.1e-122 444.1 302 69.2
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.1e-122 444.1 321 66.7
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.8e-122 443.4 320 68.4
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 4.1e-122 442.2 322 65.8
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 7.0e-122 441.4 323 66.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 2.7e-121 439.5 289 74.7
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.9e-120 436.0 335 65.4
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.2e-119 432.2 324 63.9
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.4e-117 427.2 303 67.7
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.0e-117 425.6 321 65.4
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 5.7e-116 421.8 292 69.2
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.2e-115 419.9 292 68.2
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 7.0e-114 414.8 276 72.1
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.0e-112 411.0 323 62.8
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 5.0e-112 408.7 236 81.4
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 2.2e-107 393.3 237 80.2
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 2.8e-107 392.9 302 64.6
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.1e-106 389.4 221 85.1
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-104 384.4 291 65.6
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.9e-103 380.2 322 61.2
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.3e-103 379.4 293 63.8
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 9.5e-103 377.9 255 71.4
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 3.0e-101 372.9 279 70.6
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 3.4e-100 369.4 257 67.7
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.4e-98 364.0 241 71.0
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 7.0e-98 361.7 218 78.4
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.7e-96 357.1 222 73.0
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 4.0e-93 345.9 205 78.0
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.6e-92 343.2 363 50.4
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.7e-91 340.5 301 59.5
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-90 337.4 350 53.1
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.6e-89 334.0 241 67.6
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 2.7e-89 333.2 237 68.8
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-88 330.9 342 54.1
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 6.2e-86 322.0 263 61.6
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.8e-85 320.5 290 57.2
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.5e-84 317.4 271 56.8
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 5.8e-84 315.5 359 47.4
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.5e-84 315.1 194 78.4
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 6.4e-83 312.0 216 70.8
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.9e-82 310.5 347 49.3
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.9e-82 310.5 389 46.8
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-77 293.1 194 74.7
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.2e-76 291.2 217 67.7
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.6e-71 272.3 274 55.5
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 7.3e-71 271.9 248 54.0
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 4.4e-68 262.7 166 72.3
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 5.6e-63 245.7 304 48.4
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.6e-62 244.2 196 62.8
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.1e-62 243.8 134 84.3
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.1e-53 214.9 173 62.4
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 3.1e-45 186.8 210 52.4
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.0e-44 184.1 255 44.7
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 5.5e-42 176.0 116 74.1
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 5.5e-42 176.0 223 40.4
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 3.7e-38 163.3 320 33.1
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.9e-36 156.0 291 38.8
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 3.8e-35 153.3 89 75.3
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 5.5e-34 149.4 98 72.4
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.0e-32 143.7 265 31.3
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 1.3e-27 128.3 128 51.6
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 4.4e-23 113.2 183 36.6
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 5.5e-18 96.3 80 60.0
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.6e-15 87.4 67 59.7
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.7e-14 84.7 69 59.4
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 3.7e-14 83.6 69 59.4
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 8.2e-14 82.4 49 77.6
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.4e-13 80.9 74 55.4
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.2e-10 69.3 73 52.1
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.1e-09 66.2 40 72.5
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 9.7e-07 58.9 55 49.1
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 2.8e-06 57.4 48 56.2
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.7e-06 57.0 55 47.3


User provided reference genes

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