Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 6.7e-303 1043.1 489 100.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.0e-247 859.8 460 87.0
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 4.1e-244 847.8 486 80.5
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 4.1e-244 847.8 486 80.5
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.5e-241 839.3 468 82.3
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 8.9e-231 803.5 471 78.8
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.4e-230 801.6 490 75.7
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 4.4e-230 801.2 472 77.8
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 5.8e-230 800.8 446 80.0
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 9.8e-230 800.0 460 78.7
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 4.9e-229 797.7 471 78.1
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 7.1e-228 793.9 470 76.2
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.1e-228 793.9 472 77.5
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 9.2e-228 793.5 444 79.7
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 9.2e-228 793.5 470 77.2
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.1e-227 792.3 462 78.6
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 2.7e-227 792.0 476 74.6
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.5e-227 791.6 440 80.5
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.3e-226 789.6 458 78.2
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.0e-226 788.5 485 74.2
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.5e-225 785.4 446 80.0
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.3e-225 785.0 485 73.8
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 5.6e-225 784.3 550 68.4
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 7.3e-225 783.9 449 77.7
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 7.3e-225 783.9 463 76.2
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 3.6e-224 781.6 464 76.9
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 8.1e-224 780.4 466 76.0
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.4e-223 779.6 490 74.9
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 3.1e-223 778.5 430 81.4
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 2.6e-222 775.4 426 81.7
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 7.6e-222 773.9 446 78.3
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 9.9e-222 773.5 428 80.6
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.7e-221 772.7 471 75.4
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.4e-220 769.6 468 74.8
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.9e-220 769.2 446 77.8
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.4e-220 768.8 457 76.1
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 3.2e-220 768.5 444 77.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 3.5e-219 765.0 428 78.7
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 6.0e-219 764.2 425 80.0
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 6.0e-219 764.2 449 77.7
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.7e-218 762.7 483 72.0
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.3e-218 762.3 462 74.7
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 6.6e-218 760.8 425 79.5
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.5e-217 759.6 437 78.0
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.5e-217 759.6 462 74.5
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 3.3e-217 758.4 474 74.5
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.6e-217 757.7 477 71.7
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 2.1e-216 755.7 466 72.7
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.1e-216 755.7 507 71.2
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 2.1e-216 755.7 489 71.2
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 8.1e-216 753.8 434 77.0
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.4e-215 752.3 466 73.2
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 3.1e-215 751.9 447 75.6
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 5.2e-215 751.1 495 70.3
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 6.8e-215 750.7 452 75.0
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 6.8e-215 750.7 492 70.1
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.5e-214 749.6 469 73.6
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 2.0e-214 749.2 466 72.7
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.0e-214 749.2 460 73.9
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 2.6e-214 748.8 479 71.8
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 4.4e-214 748.0 460 72.8
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 5.8e-214 747.7 476 71.4
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.8e-214 747.7 450 74.2
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 9.9e-214 746.9 473 71.5
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.9e-214 746.9 502 70.7
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.3e-213 746.5 466 72.5
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.7e-213 746.1 488 70.7
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.2e-213 745.7 425 76.5
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 6.4e-213 744.2 494 70.2
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 6.4e-213 744.2 494 70.2
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 6.4e-213 744.2 464 73.5
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 8.4e-213 743.8 462 72.9
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 8.4e-213 743.8 484 73.8
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 8.4e-213 743.8 465 73.3
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.9e-212 742.7 464 72.8
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.2e-211 740.0 447 75.2
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 2.1e-211 739.2 494 71.1
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 4.6e-211 738.0 495 69.5
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 4.6e-211 738.0 495 69.5
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.1e-210 734.6 490 69.2
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 6.6e-210 734.2 444 74.1
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.1e-209 733.4 460 72.4
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.3e-208 729.9 458 72.3
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 4.0e-207 724.9 445 74.6
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 4.9e-205 718.0 465 70.8
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 3.5e-203 711.8 460 69.3
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.8e-199 699.5 449 68.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 3.4e-198 695.3 462 71.9
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.2e-197 692.6 515 64.5
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 3.8e-197 691.8 472 68.4
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.1e-196 690.3 427 71.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 4.2e-196 688.3 408 80.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 6.0e-195 684.5 554 59.6
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 6.0e-195 684.5 418 74.6
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 1.9e-193 679.5 448 67.2
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.8e-191 672.9 482 62.9
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.2e-190 670.2 475 67.2
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-189 666.8 380 78.2
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-189 666.8 380 78.2
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 3.8e-189 665.2 378 79.1
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 5.5e-188 661.4 433 71.4
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.3e-183 644.8 456 67.5
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-181 640.2 380 76.6
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.2e-181 639.4 447 66.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.9e-177 626.3 343 81.3
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 3.3e-177 625.5 368 76.6
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 5.9e-174 614.8 325 81.8
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 2.2e-173 612.8 425 68.0
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.3e-170 602.8 518 57.1
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 3.1e-167 592.4 460 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 2.5e-164 582.8 417 62.4
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 6.3e-160 568.2 433 59.8
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 3.5e-158 562.4 440 56.6
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-154 550.8 426 62.9
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.1e-148 530.8 451 55.0
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.0e-145 520.0 396 57.1
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 4.5e-142 508.8 320 69.7
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.7e-133 480.3 267 79.4
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 3.8e-133 479.2 427 54.1
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.3e-132 475.7 257 82.5
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 2.2e-112 410.2 216 82.4
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 6.0e-102 375.6 455 41.5
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.9e-89 331.6 184 79.9
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 5.6e-76 289.3 158 80.4
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.1e-71 275.0 420 38.6
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.9e-69 266.5 148 77.7
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.3e-67 259.2 368 40.2
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.1e-61 239.6 191 64.9
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 7.7e-57 225.7 152 68.4
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.2e-55 219.2 118 83.9
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 4.8e-51 206.5 148 57.4
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.1e-50 205.3 110 78.2
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 2.3e-45 187.6 109 78.0
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.4e-42 178.3 185 51.4
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.5e-39 168.3 103 71.8
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 2.0e-36 157.9 188 45.7
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 2.2e-19 101.3 60 73.3
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.0e-16 92.4 61 62.3
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.0e-08 63.5 125 36.8
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 9.5e-07 59.3 41 63.4


User provided reference genes

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