Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0177700 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.4e-226 788.5 388 100.0
Rhsim10G0112000 Rhododendron simsii HOM05D000003 ORTHO05D000126 8.7e-72 275.0 436 42.2
Rhsim03G0167400 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.8e-64 250.8 408 41.7
Rhsim03G0083400 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.7e-49 200.3 480 34.2
Rhsim04G0150700 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.6e-49 199.9 439 36.7
Rhsim02G0107700 Rhododendron simsii HOM05D000048 ORTHO05D000006 4.7e-49 199.5 441 35.6
Rhsim02G0217100 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.4e-47 192.2 458 33.6
Rhsim11G0048600 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.2e-46 190.7 450 35.1
Rhsim09G0068100 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.3e-46 189.1 499 33.5
Rhsim04G0053400 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.1e-45 186.4 451 33.7
Rhsim01G0110700 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.5e-44 183.0 406 32.0
Rhsim08G0119300 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.6e-41 173.3 356 34.0
Rhsim07G0213000 Rhododendron simsii HOM05D000003 ORTHO05D008945 6.1e-41 172.6 464 31.9
Rhsim04G0242400 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.8e-40 168.7 492 31.7
Rhsim09G0090900 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.2e-39 168.3 365 35.6
Rhsim01G0092500 Rhododendron simsii HOM05D000003 ORTHO05D000126 5.7e-39 166.0 259 38.6
Rhsim02G0134700 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.7e-39 166.0 406 34.7
Rhsim07G0116500 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.5e-39 165.6 280 38.9
Rhsim03G0009600 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.3e-38 164.9 417 31.9
Rhsim11G0021600 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.3e-38 164.9 492 30.7
RhsimUnG0081100 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.8e-37 161.0 244 41.0
Rhsim09G0070000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-36 158.3 304 39.1
Rhsim01G0140300 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.0e-35 155.2 236 39.8
Rhsim08G0169600 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.0e-35 152.9 416 33.7
RhsimUnG0009800 Rhododendron simsii HOM05D000003 ORTHO05D000126 5.5e-34 149.4 262 35.1
Rhsim01G0198800 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.0e-32 143.7 478 30.3
Rhsim06G0096800 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.0e-32 143.7 221 36.7
Rhsim06G0091800 Rhododendron simsii HOM05D000003 ORTHO05D000126 5.7e-31 139.4 259 32.0
Rhsim13G0038300 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.7e-30 137.9 253 38.3
Rhsim07G0114000 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.4e-29 134.0 432 27.1
Rhsim01G0175100 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.2e-28 131.7 196 39.8
Rhsim08G0187900 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-28 131.7 260 33.5
Rhsim01G0274800 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-24 118.2 148 43.9
Rhsim02G0238400 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.6e-20 103.2 222 33.3
RhsimUnG0231800 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.7e-19 101.3 75 54.7
vmacro05354 Vaccinium macrocarpon HOM05D002580 ORTHO05D002811 1.7e-14 84.7 75 48.0
RhsimUnG0075100 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.4e-14 82.8 274 26.3
Rhsim02G0183300 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.4e-13 81.6 219 29.2
CSS0007648 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 1.9e-13 81.3 160 33.1
CSS0034309 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 7.8e-12 75.9 96 38.5
COL.COLO4_36554 Corchorus olitorius HOM05D000003 ORTHO05D015627 1.0e-11 75.5 131 33.6
Rhsim02G0125600 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.3e-11 74.3 224 29.0
Rhsim04G0115200 Rhododendron simsii HOM05D000003 ORTHO05D000126 8.6e-11 72.4 93 36.6
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-10 71.6 136 30.9
Haze_24561 Corylus avellana HOM05D000003 ORTHO05D000126 1.9e-10 71.2 76 43.4
Rhsim01G0139400 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.9e-10 71.2 90 37.8
QL05p033866 Quercus lobata HOM05D000003 ORTHO05D000126 3.3e-10 70.5 91 33.0
Rhsim07G0162600 Rhododendron simsii HOM05D000358 ORTHO05D005121 4.3e-10 70.1 93 37.6
COL.COLO4_36557 Corchorus olitorius HOM05D000003 ORTHO05D000126 5.6e-10 69.7 82 41.5
Rhsim04G0047100 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.3e-10 69.3 90 38.9
Rhsim06G0043400 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.3e-10 69.3 111 31.5
COL.COLO4_22586 Corchorus olitorius HOM05D000003 ORTHO05D000126 9.5e-10 68.9 77 35.1
COL.COLO4_03978 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.2e-09 68.6 72 38.9
COL.COLO4_13724 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.2e-09 68.6 90 38.9
COL.COLO4_15631 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.2e-09 68.6 90 40.0
Gohir.D01G078800 Gossypium hirsutum HOM05D000141 ORTHO05D000780 1.2e-09 68.6 75 37.3
Gorai.002G103400 Gossypium raimondii HOM05D000141 ORTHO05D000780 1.2e-09 68.6 75 37.3
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.2e-09 68.6 143 28.7
Aqoxy2G01389 Aquilegia oxysepala HOM05D000003 ORTHO05D000126 1.6e-09 68.2 116 36.2
Hma1.2p1_0467F.1_g158700 Hydrangea macrophylla HOM05D000100 ORTHO05D000052 1.6e-09 68.2 168 29.2
COL.COLO4_04241 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.1e-09 67.8 75 38.7
Gohir.A01G094300 Gossypium hirsutum HOM05D000141 ORTHO05D000780 2.1e-09 67.8 75 37.3
COL.COLO4_06602 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.8e-09 67.4 80 41.2
Rhsim11G0002700 Rhododendron simsii HOM05D059582 ORTHO05D000126 2.8e-09 67.4 143 28.7
Rhsim02G0038900 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.1e-08 65.5 76 38.2
Lj2g0023122 Lotus japonicus HOM05D000003 ORTHO05D000126 1.4e-08 65.1 83 38.6
Rhsim04G0089300 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.4e-08 65.1 103 35.9
Rhsim06G0052000 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.4e-08 65.1 76 39.5
RhsimUnG0029000 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.4e-08 65.1 103 35.9
Rhsim01G0112200 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.8e-08 64.7 76 38.2
Rhsim10G0077300 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.8e-08 64.7 141 28.4
Haze_20774 Corylus avellana HOM05D000027 ORTHO05D000126 2.3e-08 64.3 66 43.9
QL02p077845 Quercus lobata HOM05D000003 ORTHO05D000126 2.3e-08 64.3 78 37.2
PSO111G0003 Papaver somniferum HOM05D000003 ORTHO05D000006 3.1e-08 63.9 78 33.3
Rhsim11G0149500 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.0e-08 63.5 75 37.3
Sed0025570 Sechium edule HOM05D000003 ORTHO05D000126 4.0e-08 63.5 83 37.3
TAR405G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 4.0e-08 63.5 102 33.3
Lj3g0010137 Lotus japonicus HOM05D000003 ORTHO05D000126 5.2e-08 63.2 78 39.7
Lj5g0012424 Lotus japonicus HOM05D000003 ORTHO05D000126 5.2e-08 63.2 75 34.7
QL06p029562 Quercus lobata HOM05D000003 ORTHO05D000126 6.8e-08 62.8 81 33.3
Oeu027303.1 Olea europaea HOM05D000003 ORTHO05D000126 8.9e-08 62.4 80 35.0
Rhsim10G0112300 Rhododendron simsii HOM05D000003 ORTHO05D000126 8.9e-08 62.4 156 23.1
SEGI_13767 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 8.9e-08 62.4 80 31.2
COL.COLO4_24033 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.2e-07 62.0 89 33.7
QL05p028665 Quercus lobata HOM05D000003 ORTHO05D000126 1.2e-07 62.0 103 31.1
QL05p028700 Quercus lobata HOM05D000003 ORTHO05D000126 1.2e-07 62.0 103 31.1
QL06p021500 Quercus lobata HOM05D000003 ORTHO05D000126 1.2e-07 62.0 103 31.1
SEGI_30720 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 1.2e-07 62.0 75 37.3
SEGI_40129 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 1.2e-07 62.0 75 38.7
Lj6g0008318 Lotus japonicus HOM05D000003 ORTHO05D000126 1.5e-07 61.6 102 32.4
Oeu027302.1 Olea europaea HOM05D000003 ORTHO05D000126 1.5e-07 61.6 72 37.5
Oeu027304.1 Olea europaea HOM05D000003 ORTHO05D000126 1.5e-07 61.6 72 37.5
SEGI_15661 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 1.5e-07 61.6 75 36.0
COL.COLO4_25190 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.0e-07 61.2 90 34.4
Sc14g0005410 Simmondsia chinensis HOM05D000003 ORTHO05D000126 2.0e-07 61.2 79 36.7
Lj4g0020141 Lotus japonicus HOM05D000003 ORTHO05D000126 2.6e-07 60.8 78 33.3
Lj2g0007703 Lotus japonicus HOM05D000003 ORTHO05D000126 3.4e-07 60.5 78 32.1
SEGI_41369 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 3.4e-07 60.5 80 32.5
QL05p068740 Quercus lobata HOM05D000003 ORTHO05D000004 4.4e-07 60.1 81 32.1
QL05p069113 Quercus lobata HOM05D000003 ORTHO05D000004 4.4e-07 60.1 81 32.1
Sed0026203 Sechium edule HOM05D000003 ORTHO05D000126 4.4e-07 60.1 83 32.5
Lj5P270T37 Lonicera japonica HOM05D000003 ORTHO05D000126 5.8e-07 59.7 84 31.0
Lj2g0016089 Lotus japonicus HOM05D000003 ORTHO05D000126 5.8e-07 59.7 85 36.5
Lj4g0016394 Lotus japonicus HOM05D000003 ORTHO05D000126 5.8e-07 59.7 91 34.1
QL10p056378 Quercus lobata HOM05D007567 ORTHO05D000126 5.8e-07 59.7 95 35.8
COL.COLO4_07649 Corchorus olitorius HOM05D000003 ORTHO05D000004 7.5e-07 59.3 126 27.0
Peaxi162Scf00946g00052 Petunia axillaris HOM05D000003 ORTHO05D000126 7.5e-07 59.3 78 34.6
QL05p040009 Quercus lobata HOM05D000003 ORTHO05D000126 7.5e-07 59.3 79 29.1
TWI38G1337 Tripterygium wilfordii HOM05D000003 ORTHO05D000126 7.5e-07 59.3 81 32.1
vmacro07752 Vaccinium macrocarpon HOM05D000311 ORTHO05D000183 7.5e-07 59.3 272 31.2
Haze_24509 Corylus avellana HOM05D000003 ORTHO05D000126 9.8e-07 58.9 95 29.5
Lj2C538T6 Lonicera japonica HOM05D000003 ORTHO05D000126 9.8e-07 58.9 84 32.1
QL06p026526 Quercus lobata HOM05D003998 ORTHO05D005144 9.8e-07 58.9 72 33.3
Atru.chr7.664 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 58.5 78 34.6
Aqoxy2G01574 Aquilegia oxysepala HOM05D000003 ORTHO05D000126 1.3e-06 58.5 78 29.5
Aqoxy2G02194 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.3e-06 58.5 89 27.0
CANSAT80G1431 Cannabis sativa HOM05D000003 ORTHO05D000126 1.3e-06 58.5 75 36.0
COL.COLO4_34247 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.3e-06 58.5 77 33.8
Eucgr.L02110 Eucalyptus grandis HOM05D000003 ORTHO05D000126 1.3e-06 58.5 104 30.8
QL04p035086 Quercus lobata HOM05D000003 ORTHO05D000126 1.3e-06 58.5 76 32.9
QL08p035099 Quercus lobata HOM05D000003 ORTHO05D000126 1.3e-06 58.5 92 33.7
Atru.chr4.3089 Acer truncatum HOM05D000003 ORTHO05D000126 1.7e-06 58.2 78 34.6
Rhsim03G0108700 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.7e-06 58.2 95 34.7
COL.COLO4_21887 Corchorus olitorius HOM05D007567 ORTHO05D000126 2.2e-06 57.8 115 29.6
Nn1g06939 Nelumbo nucifera HOM05D000003 ORTHO05D000007 2.2e-06 57.8 82 37.8
QL04p009995 Quercus lobata HOM05D000003 ORTHO05D000126 2.2e-06 57.8 93 28.0
COL.COLO4_26026 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.9e-06 57.4 88 34.1
Dinv11369 Davidia involucrata HOM05D000003 ORTHO05D000126 2.9e-06 57.4 80 38.8
QL03p061024 Quercus lobata HOM05D000003 ORTHO05D000126 2.9e-06 57.4 91 33.0
QL04p035145 Quercus lobata HOM05D000003 ORTHO05D000126 2.9e-06 57.4 77 32.5
QL05p083215 Quercus lobata HOM05D000003 ORTHO05D000126 2.9e-06 57.4 78 38.5
QL08p015957 Quercus lobata HOM05D000003 ORTHO05D000126 2.9e-06 57.4 97 32.0
SEGI_29797 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 2.9e-06 57.4 77 32.5
Sc21g0002580 Simmondsia chinensis HOM05D000003 ORTHO05D000126 2.9e-06 57.4 75 30.7
QL07p020169 Quercus lobata HOM05D000003 ORTHO05D000126 3.7e-06 57.0 100 31.0
QL08p032371 Quercus lobata HOM05D000003 ORTHO05D000126 3.7e-06 57.0 79 35.4
Atru.chr9.1190 Acer truncatum HOM05D000003 ORTHO05D000126 4.9e-06 56.6 79 34.2
COL.COLO4_24494 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.9e-06 56.6 77 35.1
COL.COLO4_28922 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.9e-06 56.6 90 31.1
COL.COLO4_37225 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.9e-06 56.6 88 30.7
Lj8C13T6 Lonicera japonica HOM05D000003 ORTHO05D000126 4.9e-06 56.6 81 34.6
QL02p016877 Quercus lobata HOM05D000003 ORTHO05D000126 4.9e-06 56.6 82 37.8
Atru.chr6.888 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-06 56.2 82 31.7
Atru.chr7.810 Acer truncatum HOM05D000003 ORTHO05D000126 6.4e-06 56.2 78 32.1
AUR62036262 Chenopodium quinoa HOM05D000003 ORTHO05D000126 6.4e-06 56.2 81 38.3
QL06p038094 Quercus lobata HOM05D000003 ORTHO05D000126 6.4e-06 56.2 81 32.1
Rhsim09G0106200 Rhododendron simsii HOM05D000003 ORTHO05D000126 6.4e-06 56.2 76 31.6
SEGI_01720 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 6.4e-06 56.2 87 33.3
CSS0004935 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 8.3e-06 55.8 82 32.9
CSS0016982 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 8.3e-06 55.8 82 32.9
COL.COLO4_22912 Corchorus olitorius HOM05D000003 ORTHO05D000126 8.3e-06 55.8 77 32.5
QL04p035160 Quercus lobata HOM05D000003 ORTHO05D000126 8.3e-06 55.8 76 31.6
SEGI_04132 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 8.3e-06 55.8 75 34.7


User provided reference genes

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