Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 9.6e-150 533.5 274 100.0
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 3.1e-148 528.5 274 99.3
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 1.2e-99 367.1 249 74.7
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 3.5e-99 365.5 249 72.7
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 8.6e-98 360.9 241 77.2
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 3.6e-88 328.9 246 69.1
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 1.2e-86 323.9 254 64.6
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 1.3e-85 320.5 245 66.9
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 1.1e-84 317.4 241 66.4
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 3.5e-83 312.4 253 64.8
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 2.3e-82 309.7 238 67.6
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 5.0e-82 308.5 256 59.8
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 6.6e-82 308.1 236 67.4
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 7.3e-81 304.7 237 62.0
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 1.2e-80 303.9 235 65.5
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 6.2e-80 301.6 260 63.1
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 1.1e-79 300.8 226 64.6
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.4e-79 300.4 231 64.9
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 1.4e-79 300.4 240 62.5
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 1.4e-79 300.4 240 62.1
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 1.8e-79 300.1 255 60.4
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 2.3e-79 299.7 252 58.7
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 4.0e-79 298.9 227 66.1
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 4.0e-79 298.9 240 62.1
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 6.8e-79 298.1 240 62.9
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 8.9e-79 297.7 250 61.6
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 8.9e-79 297.7 216 68.5
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 1.2e-78 297.4 261 62.8
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.5e-78 297.0 240 60.4
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 3.4e-78 295.8 258 60.5
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 4.4e-78 295.4 244 63.9
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 8.3e-77 291.2 231 62.3
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 1.4e-76 290.4 226 65.0
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.6e-75 287.0 261 58.2
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 4.6e-75 285.4 247 61.1
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 4.6e-75 285.4 231 63.6
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 7.8e-75 284.6 247 61.1
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 7.8e-75 284.6 235 60.9
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 2.3e-74 283.1 231 62.8
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 2.3e-74 283.1 260 58.8
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 6.6e-74 281.6 227 63.9
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 6.6e-74 281.6 225 64.4
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 2.5e-73 279.6 242 58.7
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 1.2e-72 277.3 260 55.8
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 2.1e-72 276.6 250 58.0
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 2.8e-72 276.2 245 58.4
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 6.2e-72 275.0 242 57.9
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 6.2e-72 275.0 261 56.3
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 1.4e-71 273.9 242 57.9
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.0e-71 272.3 209 67.0
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 8.9e-71 271.2 227 59.9
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 8.9e-71 271.2 256 55.1
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 3.4e-70 269.2 231 58.0
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 3.4e-70 269.2 257 54.9
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 4.4e-70 268.9 256 55.1
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.3e-69 267.3 243 54.7
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 2.2e-69 266.5 236 60.6
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 4.9e-69 265.4 194 66.5
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 6.4e-69 265.0 243 54.3
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.1e-68 264.2 244 57.0
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 1.9e-68 263.5 243 57.2
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 2.4e-68 263.1 288 51.7
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 4.1e-68 262.3 197 66.0
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 4.1e-68 262.3 259 53.3
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 2.7e-67 259.6 244 57.4
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 2.7e-67 259.6 238 58.8
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.7e-66 256.9 242 55.0
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 1.7e-66 256.9 260 52.3
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 1.7e-66 256.9 244 55.3
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 3.9e-66 255.8 237 55.7
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 3.9e-66 255.8 252 52.8
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 5.1e-66 255.4 242 55.0
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 8.6e-66 254.6 237 55.7
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 8.6e-66 254.6 244 56.1
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 1.1e-65 254.2 236 55.1
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 1.9e-65 253.4 245 53.9
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 1.9e-65 253.4 251 52.2
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 1.9e-65 253.4 251 52.2
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.9e-65 253.4 242 55.0
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 3.3e-65 252.7 235 54.5
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 5.6e-65 251.9 228 54.8
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 5.6e-65 251.9 236 53.8
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 7.3e-65 251.5 237 54.9
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 1.6e-64 250.4 229 55.5
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 2.8e-64 249.6 250 51.6
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 3.6e-64 249.2 235 54.0
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 4.0e-63 245.7 267 54.3
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 3.4e-62 242.7 235 53.6
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 3.4e-62 242.7 235 53.6
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 1.4e-60 237.3 226 54.4
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 1.6e-59 233.8 235 53.2
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 3.0e-58 229.6 225 56.4
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 4.3e-57 225.7 344 41.6
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 9.0e-55 218.0 237 51.9
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 2.0e-54 216.9 242 48.8
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 5.8e-54 215.3 169 63.3
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 1.2e-51 207.6 179 57.5
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 1.2e-51 207.6 170 61.2
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 2.1e-51 206.8 251 46.6
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 6.6e-50 201.8 237 46.8
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 2.3e-42 176.8 490 33.3
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 2.8e-40 169.9 122 67.2
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 6.2e-40 168.7 147 57.1
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 2.7e-35 153.3 137 56.2
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 5.1e-34 149.1 225 41.8
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.5e-30 137.5 116 56.9
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.5e-30 137.5 116 56.9
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 2.8e-24 116.7 91 61.5
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 3.8e-21 106.3 153 39.9
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.6e-19 99.4 92 55.4
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 3.3e-17 93.2 202 34.2
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 9.7e-17 91.7 62 71.0
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 1.4e-15 87.8 121 40.5
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 5.3e-15 85.9 105 44.8
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 1.0e-13 81.6 179 29.6
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 4.4e-09 66.2 233 27.0


User provided reference genes

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