Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 5.2e-309 1063.5 538 100.0
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.7e-222 776.2 537 72.3
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.9e-221 772.7 448 87.9
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.1e-218 763.5 740 57.7
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.5e-204 715.3 543 66.9
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 5.1e-195 684.9 548 66.1
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.6e-185 652.1 538 62.3
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 1.1e-184 650.6 547 61.6
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.8e-184 649.8 542 64.2
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 4.0e-184 648.7 542 64.0
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 9.0e-184 647.5 555 61.1
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.2e-183 647.1 548 61.3
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 6.4e-182 641.3 541 63.8
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.2e-180 637.1 537 61.1
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.2e-180 637.1 544 62.9
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 2.1e-180 636.3 536 61.4
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 8.7e-179 630.9 551 59.7
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.6e-177 626.7 546 59.9
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 2.1e-177 626.3 543 60.0
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.7e-177 625.5 540 62.6
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.1e-176 624.0 550 60.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.4e-176 623.6 546 61.9
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.4e-176 623.6 547 60.0
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 5.8e-175 618.2 542 59.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 7.6e-175 617.8 535 59.8
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.2e-174 616.3 553 58.8
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 6.5e-174 614.8 496 62.1
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.1e-173 614.0 546 60.8
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.1e-173 614.0 536 58.8
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.1e-173 614.0 541 59.7
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.1e-173 614.0 542 58.5
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-172 610.5 543 57.8
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 4.6e-172 608.6 545 60.7
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 6.0e-172 608.2 501 61.1
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 5.1e-171 605.1 554 58.8
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.3e-169 600.5 545 58.0
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.1e-168 597.4 547 56.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.4e-168 596.3 552 56.9
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 4.0e-168 595.5 564 56.2
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 9.0e-168 594.3 538 56.3
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 9.0e-168 594.3 547 57.0
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.4e-167 592.4 547 56.1
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.8e-167 591.7 547 58.0
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.7e-166 590.1 565 58.6
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 3.8e-166 589.0 534 58.6
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 5.0e-166 588.6 546 59.7
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.4e-165 587.0 477 64.8
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.1e-165 584.7 562 57.3
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 7.1e-165 584.7 541 56.0
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.1e-164 583.2 549 55.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.5e-164 582.4 549 56.6
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 1.1e-162 577.4 489 61.6
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 7.4e-162 574.7 543 55.6
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 6.3e-161 571.6 546 55.9
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 6.3e-161 571.6 549 55.6
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.8e-160 570.1 548 54.7
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.8e-160 570.1 548 54.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.4e-160 569.7 549 54.8
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 4.1e-160 568.9 549 54.6
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 2.0e-159 566.6 549 55.2
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 4.5e-159 565.5 546 54.0
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 7.7e-159 564.7 560 56.6
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.0e-158 564.3 551 54.6
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 2.9e-158 562.8 592 52.2
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 8.5e-158 561.2 559 55.5
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.1e-157 560.8 548 54.9
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.9e-157 560.1 549 55.2
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 2.5e-157 559.7 554 55.1
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.2e-157 558.9 546 56.4
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 4.2e-157 558.9 567 54.3
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.6e-156 557.0 548 54.7
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.0e-155 554.3 564 53.4
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.0e-155 554.3 551 56.4
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.8e-155 553.5 558 54.1
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.3e-155 553.1 553 54.2
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 2.3e-155 553.1 552 54.9
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.0e-155 552.7 544 53.5
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 3.9e-155 552.4 550 54.7
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 5.1e-155 552.0 491 58.5
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.1e-154 550.8 540 54.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.5e-154 550.4 545 55.0
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.5e-154 549.7 534 55.4
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.5e-154 549.7 540 54.8
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 2.5e-154 549.7 549 55.4
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 2.5e-154 549.7 551 55.7
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 7.4e-154 548.1 544 54.8
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 7.4e-154 548.1 529 55.0
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 7.4e-154 548.1 540 54.4
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 9.7e-154 547.7 550 54.5
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.3e-153 547.4 468 56.8
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.3e-153 547.4 550 53.1
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.4e-152 543.1 547 54.5
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 5.0e-150 535.4 486 56.6
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 3.2e-149 532.7 547 53.0
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.1e-148 530.0 481 58.4
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 3.6e-148 529.3 623 48.6
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 8.8e-147 524.6 489 56.0
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.3e-145 520.8 487 55.2
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.4e-144 516.5 545 53.4
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 4.5e-143 512.3 570 48.8
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 3.2e-141 506.1 466 56.9
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 5.5e-141 505.4 528 51.1
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 9.4e-141 504.6 524 54.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.2e-140 504.2 486 55.6
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 9.7e-138 494.6 496 52.2
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 1.2e-135 487.6 495 53.7
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 3.5e-135 486.1 551 49.4
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 3.5e-135 486.1 549 51.2
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 4.5e-135 485.7 475 53.1
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 7.7e-135 485.0 472 53.8
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.6e-132 477.2 517 52.4
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 3.7e-129 466.1 543 47.1
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 9.1e-128 461.5 561 47.4
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.0e-126 458.0 477 50.1
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 7.5e-122 441.8 495 51.1
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.4e-120 437.6 558 45.2
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 5.4e-120 435.6 458 53.3
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.2e-119 434.5 448 50.2
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 3.5e-111 406.4 534 41.9
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.3e-110 403.7 549 43.4
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-107 394.4 580 40.2
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-107 394.4 580 40.2
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.9e-107 391.7 577 40.6
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.5e-106 388.7 521 42.4
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.2e-104 383.3 533 42.0
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 2.7e-103 380.2 323 58.8
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 3.6e-100 369.8 315 60.6
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 2.0e-98 364.0 514 40.3
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 2.7e-87 327.0 548 36.9
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.9e-85 320.9 453 48.1
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.6e-84 317.8 363 46.6
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 8.4e-73 278.9 700 30.1
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-72 278.5 581 33.7
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-72 278.5 580 34.1
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.7e-71 273.9 165 74.5
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 1.2e-66 258.5 165 69.1
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.5e-66 258.1 399 43.4
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 5.5e-64 249.6 459 38.1
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 8.7e-54 215.7 259 50.2
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 4.2e-48 196.8 189 48.7
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.9e-45 188.0 285 41.1
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 2.0e-42 177.9 187 53.5
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.9e-40 171.4 155 58.1
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 6.9e-35 152.9 97 68.0
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.8e-33 147.1 166 51.2
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 3.2e-32 144.1 154 52.6
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.0e-29 134.8 141 52.5
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.8e-28 131.0 142 50.7
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.4e-27 127.9 149 47.0
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.2e-23 115.5 172 36.6
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.1e-23 114.8 94 58.5
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 2.1e-23 114.8 181 34.8
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 2.7e-18 97.8 99 45.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.9e-17 94.4 59 67.8
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 3.5e-10 70.9 96 49.0
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 1.1e-08 65.9 35 80.0
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 5.2e-06 57.0 37 67.6


User provided reference genes

Program Settings