Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.4e-309 1065.4 536 100.0
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.1e-250 869.8 536 81.2
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.4e-245 852.0 531 81.0
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 8.0e-233 810.4 534 74.7
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.4e-232 809.7 532 76.3
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 2.9e-227 792.0 531 74.8
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.2e-225 786.6 533 73.7
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.7e-225 785.4 531 72.9
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 5.7e-223 777.7 532 73.1
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.7e-222 776.2 531 74.2
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 2.2e-222 775.8 537 73.0
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 4.9e-222 774.6 531 72.7
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.8e-221 772.7 533 71.3
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 2.4e-221 772.3 536 73.5
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 5.4e-221 771.2 537 72.3
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 9.2e-221 770.4 533 72.0
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 9.2e-221 770.4 532 72.6
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 1.2e-220 770.0 533 72.8
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.6e-220 769.6 535 72.1
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 4.5e-220 768.1 554 70.4
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 7.7e-220 767.3 531 72.5
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 2.3e-219 765.8 531 72.3
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.5e-218 763.1 531 71.4
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 8.0e-217 757.3 533 71.3
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 8.0e-217 757.3 533 71.3
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 6.8e-216 754.2 535 70.1
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 5.7e-215 751.1 539 70.9
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 9.8e-215 750.4 530 71.1
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 2.2e-214 749.2 531 70.8
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 2.9e-214 748.8 534 71.9
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 3.7e-214 748.4 532 70.7
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 7.8e-212 740.7 532 69.5
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 1.0e-211 740.3 527 70.6
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 2.3e-211 739.2 533 70.0
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.3e-210 735.3 529 69.2
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.7e-209 731.5 532 69.4
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.7e-209 731.5 548 68.4
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 8.0e-209 730.7 535 68.2
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.0e-208 730.3 552 67.9
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 7.5e-207 724.2 527 69.3
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 1.3e-206 723.4 545 67.7
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 4.9e-206 721.5 541 68.6
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 6.4e-206 721.1 532 68.8
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 1.1e-205 720.3 531 67.4
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 4.1e-205 718.4 531 66.3
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 5.4e-205 718.0 528 68.2
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 2.0e-204 716.1 528 67.0
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 3.9e-203 711.8 533 66.4
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 5.0e-203 711.4 528 67.8
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 8.6e-203 710.7 529 69.2
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 3.3e-202 708.8 531 66.5
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 3.6e-201 705.3 530 67.2
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.8e-200 703.0 586 63.5
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.1e-200 702.2 454 76.4
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 6.8e-200 701.0 544 66.9
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 8.9e-200 700.7 541 66.7
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 1.5e-199 699.9 537 65.9
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 4.4e-199 698.4 535 65.8
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 5.8e-199 698.0 540 67.0
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 7.5e-199 697.6 530 66.8
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.7e-198 696.4 535 66.7
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 8.3e-198 694.1 590 60.8
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 9.2e-197 690.6 535 64.9
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.0e-195 687.2 535 64.9
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.0e-195 687.2 539 64.4
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.3e-195 686.8 538 65.1
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 4.3e-194 681.8 536 65.7
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 1.8e-192 676.4 540 63.9
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 2.3e-192 676.0 535 64.5
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.6e-188 663.3 573 65.1
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.9e-186 656.4 530 62.5
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-185 653.7 593 59.5
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-184 650.6 507 67.3
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-184 650.2 554 62.3
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.8e-184 649.8 555 61.8
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 6.9e-184 647.9 546 61.5
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 5.4e-181 638.3 501 64.3
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.6e-180 636.7 532 60.0
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.9e-178 629.8 531 60.8
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 2.4e-176 622.9 448 69.6
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 4.9e-174 615.1 445 69.9
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 9.3e-173 610.9 532 59.6
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 4.3e-170 602.1 537 58.1
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 4.8e-169 598.6 537 57.7
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 6.2e-169 598.2 537 58.1
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.4e-168 596.3 532 58.5
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 3.4e-167 592.4 535 57.8
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.3e-166 590.5 531 59.1
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.8e-161 572.0 531 58.0
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.0e-158 564.3 537 55.7
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 7.1e-157 558.1 405 70.6
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 3.5e-156 555.8 401 69.3
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.5e-154 550.4 398 70.6
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 6.3e-137 491.9 542 50.0
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 9.1e-136 488.0 529 49.5
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.2e-135 487.6 542 48.7
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 2.6e-127 459.9 350 66.6
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.0e-126 458.0 350 66.3
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 9.1e-120 434.9 288 74.0
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 4.7e-116 422.5 498 47.2
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 7.5e-106 388.7 289 66.4
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.7e-105 387.5 462 47.0
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.3e-102 377.1 560 40.2
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 3.9e-94 349.7 556 38.7
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 2.4e-88 330.5 293 59.7
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 7.3e-85 318.9 407 45.9
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.3e-78 297.4 205 72.7
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.4e-74 283.1 212 68.9
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 3.5e-71 273.5 562 34.2
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.1e-69 268.5 587 33.4
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 9.6e-61 238.8 546 32.2
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 2.2e-57 227.6 166 71.1
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 8.1e-52 209.1 152 67.1
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 1.8e-51 208.0 168 58.9
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 1.8e-51 208.0 135 74.8
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.4e-51 207.6 130 77.7
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 2.9e-41 174.1 139 65.5
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 6.0e-39 166.4 130 63.1
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.9e-37 161.4 113 70.8
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 5.0e-33 146.7 99 73.7
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 5.1e-30 136.7 85 77.6
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.4e-27 128.6 99 65.7
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 7.4e-21 106.3 437 24.0
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 2.4e-19 101.3 152 39.5
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.9e-17 94.4 73 61.6
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 4.2e-16 90.5 115 49.6
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 9.4e-16 89.4 72 65.3
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 2.7e-15 87.8 71 64.8
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 3.6e-15 87.4 114 46.5
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 5.2e-14 83.6 71 62.0
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 5.2e-14 83.6 71 62.0
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 2.6e-10 71.2 72 47.2
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 2.2e-09 68.2 49 67.3
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 8.5e-09 66.2 87 46.0
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 3.2e-08 64.3 68 51.5
VMungo1080G0730 Vigna mungo HOM05D000311 ORTHO05D000183 9.4e-08 62.8 305 24.3
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 3.6e-07 60.8 36 75.0
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 5.2e-06 57.0 76 46.1
arahy.Tifrunner.gnm1.ann1.E660H8 Arachis hypogaea HOM05D005625 ORTHO05D007564 8.8e-06 56.2 35 74.3
arahy.Tifrunner.gnm1.ann1.KG76U8 Arachis hypogaea HOM05D005625 ORTHO05D007564 8.8e-06 56.2 35 74.3


User provided reference genes

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