Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0167900 Rhododendron simsii HOM05D000007 ORTHO05D000039 1.4e-99 366.3 193 100.0
Rhsim02G0168100 Rhododendron simsii HOM05D000007 ORTHO05D000039 4.4e-40 168.7 264 48.9
CSS0047811 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 5.7e-32 141.7 125 56.8
CSS0019634 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.7e-31 140.2 126 56.3
CSS0034858 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.7e-31 140.2 126 56.3
vmacro00172 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 4.9e-31 138.7 111 59.5
Rhsim11G0051800 Rhododendron simsii HOM05D000007 ORTHO05D000039 1.4e-30 137.1 99 61.6
CSS0030918 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 7.0e-30 134.8 124 54.8
CSS0030264 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 3.5e-29 132.5 124 54.0
Rhsim11G0051000 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.9e-28 129.0 117 49.6
vmacro00185 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.9e-28 129.0 99 59.6
vmacro23134 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.9e-28 129.0 104 56.7
Rhsim11G0050800 Rhododendron simsii HOM05D000007 ORTHO05D000039 5.0e-28 128.6 98 62.2
QL04p019108 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-27 127.5 112 60.7
QL04p019179 Quercus lobata HOM05D000007 ORTHO05D000039 1.9e-27 126.7 136 49.3
QL04p019213 Quercus lobata HOM05D000007 ORTHO05D000039 1.9e-27 126.7 106 61.3
QL04p019206 Quercus lobata HOM05D000007 ORTHO05D000039 3.6e-26 122.5 99 60.6
QL04p019425 Quercus lobata HOM05D000007 ORTHO05D000039 2.3e-25 119.8 113 52.2
QL04p019132 Quercus lobata HOM05D000007 ORTHO05D000039 4.0e-25 119.0 90 65.6
QL04p018852 Quercus lobata HOM05D000007 ORTHO05D000039 8.9e-25 117.9 99 56.6
Rhsim11G0051200 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.4e-24 115.9 97 60.8
CSS0040260 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 3.7e-23 112.5 99 58.6
QL04p019096 Quercus lobata HOM05D000007 ORTHO05D000039 5.4e-22 108.6 99 53.5
QL04p019188 Quercus lobata HOM05D000007 ORTHO05D000039 9.2e-22 107.8 107 55.1
QL04p019437 Quercus lobata HOM05D000007 ORTHO05D000039 4.6e-21 105.5 140 45.7
QL04p019070 Quercus lobata HOM05D000007 ORTHO05D000039 7.8e-21 104.8 97 51.5
QL04p019171 Quercus lobata HOM05D000007 ORTHO05D000039 1.7e-20 103.6 100 56.0
CSS0009539 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.5e-19 100.5 83 54.2
QL04p019545 Quercus lobata HOM05D000007 ORTHO05D000039 1.9e-19 100.1 113 53.1
CSS0045243 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 9.5e-19 97.8 108 47.2
CSS0014854 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 3.6e-18 95.9 77 55.8
CSS0029314 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000014 3.6e-18 95.9 90 53.3
Haze_12718 Corylus avellana HOM05D000007 ORTHO05D000039 1.4e-17 94.0 105 44.8
QL04p019462 Quercus lobata HOM05D000007 ORTHO05D000039 2.3e-17 93.2 97 46.4
vmacro23132 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.1e-17 92.8 103 48.5
Lj1P565T8 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-17 91.3 90 50.0
QL04p019522 Quercus lobata HOM05D000007 ORTHO05D000039 3.4e-16 89.4 119 48.7
QL04p019471 Quercus lobata HOM05D000007 ORTHO05D000039 5.8e-16 88.6 101 51.5
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.7e-15 87.0 97 43.3
QL04p019495 Quercus lobata HOM05D000007 ORTHO05D000039 1.7e-15 87.0 114 46.5
QL04p019060 Quercus lobata HOM05D000007 ORTHO05D000039 4.9e-15 85.5 101 48.5
QL04p018990 Quercus lobata HOM05D000007 ORTHO05D000039 6.4e-15 85.1 94 48.9
QL04p019537 Quercus lobata HOM05D000007 ORTHO05D000039 6.4e-15 85.1 103 46.6
QL04p019040 Quercus lobata HOM05D000007 ORTHO05D000039 8.3e-15 84.7 99 45.5
QL04p018944 Quercus lobata HOM05D000007 ORTHO05D000039 1.4e-14 84.0 101 47.5
Lj1P665T33 Lonicera japonica HOM05D000007 ORTHO05D000039 1.9e-14 83.6 92 44.6
QL04p018974 Quercus lobata HOM05D000007 ORTHO05D000039 3.2e-14 82.8 118 41.5
Haze_12717 Corylus avellana HOM05D000007 ORTHO05D000039 9.2e-14 81.3 109 41.3
QL04p019005 Quercus lobata HOM05D000007 ORTHO05D000039 9.2e-14 81.3 89 46.1
QL04p019478 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-13 80.1 88 46.6
QL04p019507 Quercus lobata HOM05D000007 ORTHO05D000039 3.5e-13 79.3 103 44.7
Lj1C674T3 Lonicera japonica HOM05D000007 ORTHO05D000039 4.6e-13 79.0 87 46.0
Lj1P671T17 Lonicera japonica HOM05D000007 ORTHO05D000039 4.6e-13 79.0 87 46.0
Cfa007491 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.3e-12 77.4 96 41.7
Lj1P664T40 Lonicera japonica HOM05D000007 ORTHO05D000039 5.1e-12 75.5 92 41.3
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 8.6e-12 74.7 84 44.0
Lj8P116T38 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-11 74.3 80 42.5
Peaxi162Scf00608g00323 Petunia axillaris HOM05D000007 ORTHO05D000039 1.5e-11 73.9 83 43.4
Lj1C654T3 Lonicera japonica HOM05D000007 ORTHO05D000039 2.5e-11 73.2 82 40.2
Peaxi162Scf00608g00048 Petunia axillaris HOM05D000007 ORTHO05D000039 2.5e-11 73.2 124 33.9
Lj1P660T10 Lonicera japonica HOM05D000007 ORTHO05D000039 4.3e-11 72.4 93 34.4
Manes.07G068800 Manihot esculenta HOM05D000007 ORTHO05D000039 4.3e-11 72.4 90 38.9
Dinv21276 Davidia involucrata HOM05D000007 ORTHO05D000039 7.3e-11 71.6 93 39.8
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 7.3e-11 71.6 84 39.3
Hma1.2p1_0178F.1_g078390 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 7.3e-11 71.6 80 38.8
Lju1074C2T0 Lonicera japonica HOM05D000007 ORTHO05D000039 7.3e-11 71.6 92 40.2
Lju1601A0G41 Lonicera japonica HOM05D000007 ORTHO05D000039 1.2e-10 70.9 127 36.2
CSS0036577 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 2.1e-10 70.1 87 40.2
CAN.G168.22 Capsicum annuum HOM05D000007 ORTHO05D000039 2.1e-10 70.1 80 41.2
Dinv19778 Davidia involucrata HOM05D000007 ORTHO05D000039 2.1e-10 70.1 80 40.0
QL04p019084 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-10 70.1 60 51.7
Solyc10g008580.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 2.1e-10 70.1 89 40.4
Lj1P673T32 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-10 69.7 95 37.9
PGSC0003DMG400021672 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.8e-10 69.7 84 36.9
MSTRG.6523 Avicennia marina HOM05D000007 ORTHO05D000039 3.6e-10 69.3 80 40.0
Sopen10g004400 Solanum pennellii HOM05D000007 ORTHO05D000039 3.6e-10 69.3 89 40.4
Lj1C663T1 Lonicera japonica HOM05D000007 ORTHO05D000039 4.7e-10 68.9 122 37.7
Lj1P593T30 Lonicera japonica HOM05D000007 ORTHO05D000039 4.7e-10 68.9 99 35.4
CiPaw.03G182200 Carya illinoinensis HOM05D000007 ORTHO05D000039 6.2e-10 68.6 108 38.0
Lj1P652T32 Lonicera japonica HOM05D000007 ORTHO05D000039 6.2e-10 68.6 85 37.6
vmacro12403 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 6.2e-10 68.6 87 41.4
Lj1C664T13 Lonicera japonica HOM05D000007 ORTHO05D000039 8.1e-10 68.2 89 39.3
Lj1P653T20 Lonicera japonica HOM05D000007 ORTHO05D000039 8.1e-10 68.2 73 42.5
Lj1C654T14 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-09 67.8 109 34.9
QL04p018874 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-09 67.8 94 40.4
PGSC0003DMG400021673 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.1e-09 67.8 88 37.5
Lj1P653T16 Lonicera japonica HOM05D000007 ORTHO05D000039 1.4e-09 67.4 80 40.0
Lj1P670T34 Lonicera japonica HOM05D000007 ORTHO05D000039 1.4e-09 67.4 95 36.8
vmacro12404 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 1.4e-09 67.4 87 40.2
Duzib268G1877 Durio zibethinus HOM05D000007 ORTHO05D000039 3.1e-09 66.2 97 38.1
Lj1C599G12 Lonicera japonica HOM05D000007 ORTHO05D000039 4.0e-09 65.9 96 38.5
PGSC0003DMG400010275 Solanum tuberosum HOM05D000007 ORTHO05D000039 4.0e-09 65.9 84 36.9
CSS0017530 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 5.2e-09 65.5 80 38.8
CSS0044141 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 5.2e-09 65.5 93 36.6
Lj1C654T13 Lonicera japonica HOM05D000007 ORTHO05D000039 5.2e-09 65.5 76 40.8
Lj1P654T46 Lonicera japonica HOM05D000007 ORTHO05D000039 5.2e-09 65.5 82 37.8
Lju1601C0T10 Lonicera japonica HOM05D000007 ORTHO05D000039 5.2e-09 65.5 82 37.8
PGSC0003DMG402021671 Solanum tuberosum HOM05D000007 ORTHO05D000039 5.2e-09 65.5 81 37.0
Actinidia37850 Actinidia chinensis HOM05D000007 ORTHO05D000039 6.8e-09 65.1 89 39.3
CSS0048184 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 8.9e-09 64.7 91 37.4
Lj1P662T13 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-09 64.7 95 38.9
QL08p040450 Quercus lobata HOM05D000007 ORTHO05D000039 8.9e-09 64.7 109 32.1
Lj1P599T56 Lonicera japonica HOM05D000007 ORTHO05D000039 1.2e-08 64.3 115 34.8
Actinidia07889 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.5e-08 63.9 114 36.8
Dinv12702 Davidia involucrata HOM05D000007 ORTHO05D000039 1.5e-08 63.9 90 38.9
Hma1.2p1_1267F.1_g271540 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.5e-08 63.9 115 37.4
Hma1.2p1_2614F.1_g325400 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.5e-08 63.9 115 37.4
Lj1P591T21 Lonicera japonica HOM05D000007 ORTHO05D000039 1.5e-08 63.9 104 36.5
Manes.07G011100 Manihot esculenta HOM05D000007 ORTHO05D000039 1.5e-08 63.9 85 32.9
Lj4C425G8 Lonicera japonica HOM05D000007 ORTHO05D000039 2.0e-08 63.5 86 38.4
Peaxi162Scf00776g00029 Petunia axillaris HOM05D000007 ORTHO05D000521 2.0e-08 63.5 93 33.3
Dinv19775 Davidia involucrata HOM05D000007 ORTHO05D000039 2.6e-08 63.2 84 38.1
MELO3C014363.2 Cucumis melo HOM05D000007 ORTHO05D000039 3.4e-08 62.8 82 36.6
DCAR_019197 Daucus carota HOM05D000007 ORTHO05D000039 3.4e-08 62.8 92 35.9
Lj1P794T16 Lonicera japonica HOM05D000007 ORTHO05D000039 3.4e-08 62.8 84 34.5
vmacro12417 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.4e-08 62.8 86 34.9
FAN04G2450 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.4e-08 62.4 97 38.1
PGSC0003DMG400044342 Solanum tuberosum HOM05D000007 ORTHO05D000039 4.4e-08 62.4 88 36.4
Ciclev10030186m.g Citrus clementina HOM05D000007 ORTHO05D000039 5.8e-08 62.0 84 36.9
ClCG09G014060 Citrullus lanatus HOM05D000007 ORTHO05D000039 7.6e-08 61.6 82 35.4
Lj1A662G33 Lonicera japonica HOM05D000007 ORTHO05D000039 7.6e-08 61.6 96 37.5
Lj1C674T7 Lonicera japonica HOM05D000007 ORTHO05D000039 7.6e-08 61.6 93 40.9
Lju225C0T9 Lonicera japonica HOM05D000007 ORTHO05D000039 7.6e-08 61.6 84 39.3
Rhsim06G0124400 Rhododendron simsii HOM05D001399 ORTHO05D000039 7.6e-08 61.6 80 37.5
CsaV3_6G037500 Cucumis sativus L. HOM05D000007 ORTHO05D000039 9.9e-08 61.2 101 33.7
Lj1C674T8 Lonicera japonica HOM05D000007 ORTHO05D000039 9.9e-08 61.2 117 33.3
Nitab4.5_0000990g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 9.9e-08 61.2 82 39.0
Oeu011073.1 Olea europaea HOM05D000007 ORTHO05D000039 1.3e-07 60.8 89 33.7
QL08p040425 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-07 60.8 88 34.1
QL08p040468 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-07 60.8 90 32.2
SalBow7G4817 Salvia bowleyana HOM05D000007 ORTHO05D000039 1.3e-07 60.8 86 36.0
Cfa007447 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.7e-07 60.5 83 39.8
Cc05_g06410 Coffea canephora HOM05D000007 ORTHO05D000039 1.7e-07 60.5 87 35.6
Cc05_g08680 Coffea canephora HOM05D000007 ORTHO05D000039 1.7e-07 60.5 82 39.0
FvH4_5g33960 Fragaria vesca HOM05D000007 ORTHO05D000039 1.7e-07 60.5 97 37.1
FAN08G3168 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.7e-07 60.5 97 37.1
TWI31G0212 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.7e-07 60.5 83 37.3
Sed0011449 Sechium edule HOM05D000007 ORTHO05D000039 2.9e-07 59.7 81 35.8
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 4.9e-07 58.9 85 35.3
FAN18G4160 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.9e-07 58.9 97 36.1
Lj1C655T5 Lonicera japonica HOM05D000007 ORTHO05D000039 4.9e-07 58.9 96 37.5
Lj1C671T2 Lonicera japonica HOM05D000007 ORTHO05D000039 4.9e-07 58.9 96 34.4
Manes.07G010900 Manihot esculenta HOM05D000007 ORTHO05D000039 4.9e-07 58.9 85 32.9
QL08p040393 Quercus lobata HOM05D000007 ORTHO05D000039 4.9e-07 58.9 81 34.6
Cfa007446 Carpinus fangiana HOM05D000007 ORTHO05D000039 6.4e-07 58.5 107 38.3
Manes.10G077179 Manihot esculenta HOM05D000007 ORTHO05D000039 6.4e-07 58.5 83 37.3
Rhsim06G0126300 Rhododendron simsii HOM05D000007 ORTHO05D000039 6.4e-07 58.5 127 33.9
COL.COLO4_09451 Corchorus olitorius HOM05D000007 ORTHO05D000039 8.4e-07 58.2 88 38.6
FAN02G3393 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.4e-07 58.2 85 36.5
Lj1P652T23 Lonicera japonica HOM05D000007 ORTHO05D000039 8.4e-07 58.2 80 33.8
TWI56G1346 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 8.4e-07 58.2 111 27.9
Lj1P672T29 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-06 57.8 80 32.5
Lj1P674T76 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-06 57.8 80 32.5
QL08p040501 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-06 57.8 93 30.1
Lj1A671T55 Lonicera japonica HOM05D000007 ORTHO05D000039 1.4e-06 57.4 117 32.5
Peaxi162Scf00152g00825 Petunia axillaris HOM05D000007 ORTHO05D000039 1.4e-06 57.4 88 37.5
Rhsim12G0196600 Rhododendron simsii HOM05D000007 ORTHO05D000039 1.4e-06 57.4 89 32.6
CAN.G464.45 Capsicum annuum HOM05D000007 ORTHO05D000039 1.9e-06 57.0 88 35.2
FAN04G2331 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.9e-06 57.0 92 34.8
Lj1P665T26 Lonicera japonica HOM05D000007 ORTHO05D000039 1.9e-06 57.0 95 33.7
Haze_14655 Corylus avellana HOM05D001101 ORTHO05D000893 2.4e-06 56.6 113 35.4
FvH4_6g27880 Fragaria vesca HOM05D000007 ORTHO05D000039 2.4e-06 56.6 85 34.1
FAN14G0238 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.4e-06 56.6 85 34.1
Nitab4.5_0018863g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.4e-06 56.6 82 34.1
Potri.001G262900 Populus trichocarpa HOM05D000007 ORTHO05D000039 2.4e-06 56.6 82 35.4
RcHm_v2.0_Chr2g0131321 Rosa chinensis HOM05D000007 ORTHO05D000039 2.4e-06 56.6 85 32.9
vmacro13635 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 2.4e-06 56.6 97 33.0
MELO3C014362.2 Cucumis melo HOM05D000007 ORTHO05D000039 4.1e-06 55.8 101 30.7
Lju225C3T2 Lonicera japonica HOM05D000007 ORTHO05D000039 4.1e-06 55.8 118 34.7
Nitab4.5_0000249g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.1e-06 55.8 82 32.9
Lj1A671T53 Lonicera japonica HOM05D000007 ORTHO05D000039 5.4e-06 55.5 92 37.0
Nitab4.5_0005902g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000039 5.4e-06 55.5 82 35.4
Cfa007444 Carpinus fangiana HOM05D000007 ORTHO05D000039 7.1e-06 55.1 83 36.1
Migut.M00302 Erythranthe guttata HOM05D000007 ORTHO05D000039 7.1e-06 55.1 80 31.2
Rhsim04G0063900 Rhododendron simsii HOM05D000007 ORTHO05D000039 7.1e-06 55.1 78 34.6
SGA_v2.0_scaffold16G07720 Striga asiatica HOM05D000007 ORTHO05D000039 7.1e-06 55.1 98 30.6
SGA_v2.0_scaffold154G37106 Striga asiatica HOM05D000007 ORTHO05D000039 9.2e-06 54.7 118 30.5


User provided reference genes

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