Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 1.3e-261 906.0 513 100.0
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 8.0e-81 305.4 545 45.0
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.4e-61 240.7 423 41.4
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 4.0e-48 196.8 526 34.4
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 6.8e-48 196.1 412 37.6
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 7.5e-47 192.6 437 39.1
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 7.3e-42 176.0 558 35.1
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.9e-37 161.4 526 33.1
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 7.1e-37 159.5 509 33.0
Actinidia26708 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.0e-35 155.6 368 37.5
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 6.6e-35 152.9 515 32.6
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 2.1e-33 147.9 523 30.8
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 1.4e-32 145.2 537 32.8
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 4.0e-32 143.7 537 31.8
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 5.2e-32 143.3 553 30.9
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 2.6e-31 141.0 501 32.5
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 2.4e-29 134.4 500 31.0
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 3.2e-29 134.0 510 29.6
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.2e-29 133.7 499 29.5
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 9.3e-29 132.5 500 30.2
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 9.3e-29 132.5 498 30.3
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 1.2e-28 132.1 509 29.9
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 3.5e-28 130.6 509 30.1
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.3e-27 128.6 375 33.6
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.0e-27 127.5 547 31.4
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 5.1e-27 126.7 544 27.8
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 6.6e-27 126.3 244 38.5
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 8.7e-27 125.9 521 28.4
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.9e-26 124.8 510 31.8
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.9e-26 124.8 487 30.8
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 2.5e-26 124.4 496 30.6
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 5.6e-26 123.2 521 28.0
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 5.6e-26 123.2 195 48.2
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.1e-25 121.3 531 30.3
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 8.1e-25 119.4 198 42.9
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.1e-24 119.0 527 30.2
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.4e-24 118.6 499 30.9
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 1.8e-24 118.2 504 28.8
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.8e-24 118.2 509 29.7
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 9.0e-24 115.9 509 29.1
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 1.2e-23 115.5 538 29.6
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.2e-23 115.5 206 41.3
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-23 115.2 208 45.2
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 4.5e-23 113.6 501 33.5
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 9.9e-23 112.5 501 27.5
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 9.9e-23 112.5 217 39.2
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 2.9e-22 110.9 506 29.6
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 3.8e-22 110.5 206 43.7
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 6.4e-22 109.8 272 36.4
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 6.4e-22 109.8 272 36.4
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 6.4e-22 109.8 525 28.6
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 8.4e-22 109.4 241 39.0
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.1e-21 109.0 210 44.8
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.2e-21 107.5 524 30.0
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 4.2e-21 107.1 507 28.2
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 7.1e-21 106.3 202 39.1
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 9.3e-21 105.9 240 40.4
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 9.3e-21 105.9 240 40.4
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 9.3e-21 105.9 240 37.5
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.2e-20 105.5 514 28.8
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 1.6e-20 105.1 501 28.3
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.1e-20 104.8 241 38.2
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.7e-20 104.4 282 34.0
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.7e-20 104.4 214 44.9
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 4.6e-20 103.6 240 37.1
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 6.0e-20 103.2 268 34.7
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 6.0e-20 103.2 503 29.4
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.3e-19 102.1 208 44.7
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 3.0e-19 100.9 199 38.7
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.9e-19 100.5 495 29.1
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 5.1e-19 100.1 504 27.2
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 5.1e-19 100.1 245 35.5
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 5.1e-19 100.1 188 38.8
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-18 98.6 209 45.0
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 1.9e-18 98.2 199 38.7
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.9e-18 98.2 191 40.3
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 2.5e-18 97.8 588 24.1
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.5e-18 97.8 530 28.9
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 7.4e-18 96.3 504 29.2
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 9.6e-18 95.9 507 27.2
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.3e-17 95.5 257 33.5
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.3e-17 95.5 507 27.4
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.6e-17 95.1 504 29.0
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.1e-17 94.7 509 28.3
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 2.1e-17 94.7 256 35.9
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.6e-17 94.0 517 27.7
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 4.8e-17 93.6 191 37.2
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 6.2e-17 93.2 507 28.6
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 8.1e-17 92.8 185 40.0
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.1e-16 92.4 194 40.2
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 1.1e-16 92.4 183 39.9
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.1e-16 92.4 524 26.9
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.4e-16 92.0 498 26.3
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.4e-16 92.0 174 42.0
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.8e-16 91.7 197 37.6
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 2.4e-16 91.3 321 31.2
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.4e-16 91.3 514 26.5
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.4e-16 91.3 176 38.6
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 4.0e-16 90.5 184 38.6
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 6.9e-16 89.7 197 37.6
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 9.0e-16 89.4 221 34.8
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 9.0e-16 89.4 284 35.2
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.2e-15 89.0 513 27.7
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.5e-15 88.6 230 36.5
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-15 87.8 185 38.9
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.6e-15 87.8 185 38.9
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 4.5e-15 87.0 177 41.2
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.5e-15 87.0 219 36.5
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 5.8e-15 86.7 247 34.0
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 7.6e-15 86.3 170 40.0
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 7.6e-15 86.3 528 27.7
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 9.9e-15 85.9 594 25.8
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.3e-14 85.5 505 29.5
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-14 85.5 185 36.2
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.3e-14 85.5 169 39.1
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.3e-14 85.5 173 41.6
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.8e-14 84.0 173 40.5
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 3.8e-14 84.0 194 35.1
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 4.9e-14 83.6 543 27.6
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 6.4e-14 83.2 185 37.3
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 8.4e-14 82.8 188 37.2
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 8.4e-14 82.8 188 37.2
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 8.4e-14 82.8 195 35.4
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 3.2e-13 80.9 183 36.1
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.2e-13 80.9 193 35.2
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 4.2e-13 80.5 501 27.3
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 7.1e-13 79.7 188 34.6
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 9.3e-13 79.3 183 35.5
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 9.3e-13 79.3 185 35.1
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-12 79.0 183 36.1
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-12 78.2 184 35.9
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 3.5e-12 77.4 177 34.5
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 3.5e-12 77.4 89 51.7
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-11 75.5 191 36.1
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-11 75.5 191 36.1
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.8e-11 75.1 499 25.9
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 2.3e-11 74.7 502 25.9
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 3.0e-11 74.3 177 33.3
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 3.9e-11 73.9 95 50.5
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.9e-11 73.9 511 28.6
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 5.1e-11 73.6 191 34.6
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 5.1e-11 73.6 494 24.9
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 6.7e-11 73.2 174 34.5
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.5e-10 72.0 172 36.6
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-10 72.0 190 33.7
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 1.5e-10 72.0 190 32.1
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 3.3e-10 70.9 501 25.7
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 3.3e-10 70.9 176 33.5
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 4.3e-10 70.5 183 34.4
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 9.6e-10 69.3 224 36.6
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.7e-09 67.4 170 34.1
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 8.2e-09 66.2 76 51.3
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 8.2e-09 66.2 175 35.4
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-08 65.5 185 31.9
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.4e-08 65.5 184 34.2
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.8e-08 65.1 64 60.9
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 6.9e-08 63.2 60 55.0
RcHm_v2.0_Chr2g0145901 Rosa chinensis HOM05D004305 ORTHO05D035653 9.0e-08 62.8 199 27.1
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 3.4e-07 60.8 180 37.8
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 3.8e-06 57.4 56 53.6


User provided reference genes

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