Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0161700 Rhododendron simsii HOM05D004088 ORTHO05D004736 2.1e-169 599.0 308 100.0
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 8.0e-20 102.1 72 75.0
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 5.2e-19 99.4 85 63.5
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 1.2e-18 98.2 69 76.8
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 1.7e-17 94.4 78 69.2
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.7e-17 94.4 87 60.9
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.1e-16 91.7 77 67.5
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.9e-16 90.9 77 64.9
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.9e-16 90.9 77 64.9
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 2.4e-16 90.5 72 68.1
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 4.1e-16 89.7 71 70.4
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 4.1e-16 89.7 71 70.4
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 4.1e-16 89.7 71 70.4
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 7.0e-16 89.0 73 67.1
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 7.0e-16 89.0 77 61.0
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 7.0e-16 89.0 71 67.6
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 7.0e-16 89.0 71 67.6
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.7e-15 87.0 72 65.3
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 3.5e-15 86.7 86 59.3
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 4.6e-15 86.3 67 70.1
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 7.8e-15 85.5 125 48.8
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 1.0e-14 85.1 138 45.7
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 1.3e-14 84.7 94 58.5
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 1.3e-14 84.7 73 63.0
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 3.0e-14 83.6 71 64.8
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 3.0e-14 83.6 66 68.2
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 3.0e-14 83.6 69 66.7
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 5.1e-14 82.8 83 56.6
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 8.6e-14 82.0 67 68.7
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 1.1e-13 81.6 74 60.8
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 1.1e-13 81.6 77 54.5
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 1.5e-13 81.3 74 60.8
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 1.5e-13 81.3 80 57.5
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 1.9e-13 80.9 74 62.2
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 1.9e-13 80.9 79 54.4
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 2.5e-13 80.5 73 61.6
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 3.3e-13 80.1 114 45.6
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 4.3e-13 79.7 60 68.3
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 4.3e-13 79.7 73 57.5
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 5.6e-13 79.3 129 45.0
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 5.6e-13 79.3 78 53.8
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 7.3e-13 79.0 62 67.7
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 9.5e-13 78.6 60 71.7
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 1.2e-12 78.2 85 52.9
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 1.2e-12 78.2 96 47.9
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 1.2e-12 78.2 112 45.5
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.6e-12 77.8 113 47.8
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 1.6e-12 77.8 63 68.3
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 2.1e-12 77.4 86 54.7
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 2.8e-12 77.0 97 47.4
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 3.6e-12 76.6 69 55.1
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 4.7e-12 76.3 70 58.6
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 6.2e-12 75.9 138 38.4
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 8.1e-12 75.5 101 45.5
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 1.4e-11 74.7 74 54.1
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 2.3e-11 73.9 84 50.0
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.3e-11 73.9 148 37.2
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 3.1e-11 73.6 58 63.8
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 3.1e-11 73.6 79 53.2
CDE12G0022 Ceratophyllum demersum HOM05D000617 ORTHO05D004736 4.0e-11 73.2 79 50.6
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 4.0e-11 73.2 73 57.5
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 5.2e-11 72.8 65 60.0
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 6.8e-11 72.4 117 44.4
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 8.9e-11 72.0 69 53.6
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 8.9e-11 72.0 114 40.4
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 8.9e-11 72.0 78 48.7
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 8.9e-11 72.0 101 46.5
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 1.2e-10 71.6 113 42.5
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 1.2e-10 71.6 78 55.1
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 1.2e-10 71.6 147 34.7
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 1.2e-10 71.6 94 40.4
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 1.2e-10 71.6 61 63.9
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.2e-10 71.6 95 47.4
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.2e-10 71.6 102 38.2
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 1.5e-10 71.2 67 53.7
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.5e-10 71.2 83 47.0
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 2.0e-10 70.9 83 48.2
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.0e-10 70.9 70 52.9
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 2.0e-10 70.9 56 69.6
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 3.4e-10 70.1 94 45.7
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 3.4e-10 70.1 60 61.7
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 4.4e-10 69.7 68 57.4
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 4.4e-10 69.7 96 44.8
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 5.8e-10 69.3 122 40.2
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 7.5e-10 68.9 79 50.6
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 7.5e-10 68.9 122 40.2
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 9.9e-10 68.6 70 52.9
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 9.9e-10 68.6 70 52.9
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 9.9e-10 68.6 94 45.7
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.2e-09 67.4 81 46.9
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 2.2e-09 67.4 74 54.1
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 2.9e-09 67.0 68 52.9
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 2.9e-09 67.0 93 43.0
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 2.9e-09 67.0 128 39.1
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 3.7e-09 66.6 109 40.4
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 3.7e-09 66.6 66 59.1
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 3.7e-09 66.6 66 59.1
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 4.9e-09 66.2 67 55.2
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 6.4e-09 65.9 88 44.3
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 8.3e-09 65.5 88 48.9
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 8.3e-09 65.5 120 35.0
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 1.1e-08 65.1 73 50.7
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 1.9e-08 64.3 107 42.1
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 7.1e-08 62.4 60 51.7
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 2.7e-07 60.5 70 50.0
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 4.6e-07 59.7 159 34.6
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 6.0e-07 59.3 159 34.6
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 1.7e-06 57.8 62 50.0
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 3.0e-06 57.0 95 34.7
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 3.9e-06 56.6 66 48.5


User provided reference genes

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