Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.6e-172 609.4 317 100.0
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.2e-124 448.0 319 75.2
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.3e-118 429.5 317 72.9
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.5e-114 416.8 320 70.9
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 5.8e-114 414.8 323 71.5
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 8.3e-113 411.0 319 68.0
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 1.9e-109 399.8 321 71.3
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 2.6e-98 362.8 319 62.1
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.5e-95 352.4 323 60.7
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.3e-94 350.5 321 60.1
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 5.1e-94 348.6 323 63.2
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 5.3e-91 338.6 331 59.5
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 4.9e-89 332.0 320 58.4
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.4e-88 329.7 320 57.5
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 2.4e-88 329.7 320 57.5
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.4e-88 329.7 320 57.2
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 4.3e-85 318.9 326 57.7
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.3e-84 317.4 312 59.3
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 3.6e-84 315.8 314 59.6
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.8e-83 313.5 320 58.1
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 4.9e-81 305.4 322 55.9
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.9e-80 303.5 311 59.2
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.2e-80 302.8 337 52.2
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.2e-80 302.8 337 52.2
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.6e-79 300.4 307 59.0
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 1.6e-79 300.4 313 55.9
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 2.1e-79 300.1 317 57.1
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 2.7e-79 299.7 300 54.7
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 1.3e-78 297.4 324 54.9
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 6.7e-78 295.0 323 56.0
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 8.7e-78 294.7 323 56.3
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 8.7e-78 294.7 298 57.4
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 1.1e-77 294.3 317 56.5
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 9.6e-77 291.2 313 57.2
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.3e-76 290.8 318 56.3
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.4e-75 287.3 320 50.6
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.0e-75 285.8 320 50.9
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 7.6e-74 281.6 343 51.9
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 1.3e-73 280.8 303 53.1
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 2.2e-73 280.0 319 54.9
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 2.9e-73 279.6 304 53.6
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 4.9e-73 278.9 304 57.6
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.5e-73 278.5 319 54.9
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.9e-72 276.9 319 54.5
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.5e-72 276.6 314 54.5
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.2e-72 275.8 296 55.4
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 4.6e-71 272.3 319 54.2
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.0e-71 271.9 318 54.7
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 1.9e-69 266.9 305 49.8
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 2.5e-69 266.5 299 50.8
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 3.3e-69 266.2 313 53.7
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 7.4e-69 265.0 299 50.8
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.3e-68 264.2 330 50.0
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.3e-68 264.2 296 53.7
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.8e-68 263.1 324 51.5
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 4.8e-68 262.3 305 50.2
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 3.1e-67 259.6 302 51.7
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 6.9e-67 258.5 300 55.0
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 9.0e-67 258.1 319 53.3
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.2e-66 257.7 335 47.8
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 7.6e-66 255.0 303 49.2
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 3.8e-65 252.7 312 49.0
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 6.5e-65 251.9 296 51.4
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 8.5e-65 251.5 306 52.6
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 8.5e-65 251.5 307 52.8
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.4e-64 250.8 313 48.9
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.4e-64 250.8 294 49.3
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 3.2e-64 249.6 298 49.0
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 5.5e-64 248.8 297 49.8
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 1.6e-63 247.3 312 48.4
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 2.1e-63 246.9 293 51.9
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 3.6e-63 246.1 297 49.2
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 6.1e-63 245.4 311 50.2
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 1.0e-62 244.6 311 46.6
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.8e-62 243.8 299 52.8
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.8e-62 243.8 298 50.7
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 2.3e-62 243.4 310 48.1
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 2.3e-62 243.4 302 49.3
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 3.9e-62 242.7 294 49.3
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 6.7e-62 241.9 299 49.2
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 8.7e-62 241.5 294 49.0
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.1e-61 241.1 286 53.5
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 2.5e-61 240.0 314 47.1
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 5.7e-61 238.8 314 47.8
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 1.3e-60 237.7 298 49.7
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.3e-60 237.7 316 48.1
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.3e-60 237.7 302 51.0
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 2.2e-60 236.9 290 49.0
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 2.8e-60 236.5 310 47.1
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 6.3e-60 235.3 290 50.7
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 6.3e-60 235.3 311 46.6
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 6.3e-60 235.3 310 50.6
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 8.2e-60 235.0 312 47.1
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 8.2e-60 235.0 289 50.2
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 5.3e-59 232.3 294 47.3
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 6.9e-59 231.9 318 45.9
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 9.1e-59 231.5 311 46.3
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 9.1e-59 231.5 303 49.2
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.2e-58 231.1 297 48.1
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 2.6e-58 229.9 310 46.1
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.0e-57 228.0 256 52.3
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.3e-57 227.6 310 46.8
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 1.3e-57 227.6 303 45.5
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.7e-57 227.3 305 47.2
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 2.9e-57 226.5 311 46.0
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 2.9e-57 226.5 311 46.0
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.8e-57 226.1 266 52.3
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 3.8e-57 226.1 201 67.7
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 6.5e-57 225.3 258 54.3
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 1.1e-56 224.6 304 48.4
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 2.5e-56 223.4 301 45.8
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 3.2e-56 223.0 323 48.0
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.5e-53 214.2 297 46.1
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 2.0e-53 213.8 297 46.1
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 3.7e-52 209.5 323 46.1
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 3.7e-52 209.5 310 45.8
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.6e-45 186.8 282 42.9
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-42 177.9 278 42.4
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.0e-42 177.2 278 42.4
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.1e-35 153.3 146 62.3
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.0e-33 148.3 276 38.8
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 9.4e-32 141.7 280 38.9
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 4.7e-31 139.4 162 51.2
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 3.5e-26 123.2 180 48.9
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 7.7e-26 122.1 118 56.8
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 4.3e-16 89.7 260 30.8
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.0e-14 85.1 120 51.7
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.4e-14 84.7 101 49.5
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.2e-12 77.4 165 37.6
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 2.8e-07 60.5 113 38.9


User provided reference genes

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