Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.0e-133 478.4 225 100.0
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 2.3e-96 355.9 223 78.0
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 4.9e-83 311.6 214 74.3
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 8.9e-77 290.8 225 63.6
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.5e-71 272.7 215 62.3
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 8.1e-70 267.7 215 61.9
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.6e-65 253.4 226 57.1
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 6.0e-65 251.5 216 56.0
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 2.3e-64 249.6 216 55.6
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 3.0e-64 249.2 225 54.7
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.6e-62 243.4 224 51.8
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.6e-62 243.4 224 54.0
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 8.1e-62 241.1 225 53.3
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 3.1e-61 239.2 219 53.4
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.9e-61 238.0 222 53.2
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 9.0e-61 237.7 225 52.9
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.2e-60 237.3 223 53.8
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 2.0e-60 236.5 225 52.4
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 5.8e-60 235.0 216 53.7
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 9.9e-60 234.2 216 53.7
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 9.9e-60 234.2 225 53.3
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 1.3e-59 233.8 215 54.9
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 2.2e-59 233.0 216 54.6
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 6.4e-59 231.5 226 50.0
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 1.1e-58 230.7 213 52.6
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 1.4e-58 230.3 225 51.6
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.9e-58 229.9 222 51.8
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.9e-58 229.9 226 49.6
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 5.4e-58 228.4 226 49.6
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 7.1e-58 228.0 226 50.9
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 9.3e-58 227.6 226 50.9
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 1.6e-57 226.9 217 53.5
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 2.1e-57 226.5 216 53.7
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 3.5e-57 225.7 225 49.3
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 7.9e-57 224.6 216 52.3
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 1.0e-56 224.2 227 50.7
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.7e-56 223.4 225 48.4
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 2.3e-56 223.0 217 53.9
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 2.3e-56 223.0 224 50.9
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 2.3e-56 223.0 225 49.8
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 3.0e-56 222.6 217 53.0
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 3.9e-56 222.2 224 51.3
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 6.6e-56 221.5 222 50.9
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 8.7e-56 221.1 226 49.1
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.1e-55 220.7 224 50.9
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.9e-55 219.9 213 50.2
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.9e-55 219.9 214 51.9
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 1.9e-55 219.9 226 50.0
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 1.9e-55 219.9 226 50.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.9e-55 219.9 226 49.6
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 2.5e-55 219.5 215 51.2
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 7.4e-55 218.0 224 46.9
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 9.6e-55 217.6 216 52.3
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.3e-54 217.2 227 50.2
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 4.8e-54 215.3 226 46.9
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 8.1e-54 214.5 228 46.9
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 8.1e-54 214.5 223 48.4
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.4e-53 213.0 214 50.9
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 6.9e-53 211.5 215 49.8
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.5e-52 210.3 216 49.5
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.0e-52 209.9 217 49.3
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.0e-52 209.9 214 50.5
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 3.4e-52 209.1 213 51.2
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 5.8e-52 208.4 224 47.3
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 5.8e-52 208.4 216 48.6
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 7.6e-52 208.0 215 49.8
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 1.3e-51 207.2 215 48.4
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 2.2e-51 206.5 224 47.3
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 8.4e-51 204.5 214 48.6
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.4e-50 203.8 214 48.6
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.4e-50 203.8 224 47.8
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 3.2e-50 202.6 214 48.1
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 7.1e-50 201.4 214 48.1
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 9.3e-50 201.1 214 47.2
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 9.3e-50 201.1 178 56.2
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.6e-49 200.3 221 48.4
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.5e-49 199.1 171 55.0
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 3.5e-49 199.1 225 46.2
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 7.9e-49 198.0 215 47.0
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.3e-48 197.2 217 48.8
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.3e-48 197.2 214 49.1
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.3e-48 196.4 143 63.6
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 3.9e-48 195.7 233 43.8
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.5e-47 193.0 175 53.1
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 2.5e-47 193.0 213 46.0
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 3.3e-47 192.6 221 45.2
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 3.3e-47 192.6 216 47.7
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.6e-46 190.3 221 44.8
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.7e-46 189.1 224 45.5
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.1e-45 187.6 176 52.8
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 3.4e-44 182.6 175 51.4
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 7.6e-44 181.4 231 45.5
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 1.3e-43 180.6 212 44.8
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.9e-42 176.8 145 57.2
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 1.6e-41 173.7 160 52.5
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 6.9e-37 158.3 216 41.2
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 9.0e-37 157.9 147 54.4
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 3.2e-34 149.4 225 40.4
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 7.9e-33 144.8 172 45.3
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.8e-32 143.7 185 41.6
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 1.9e-31 140.2 218 36.7
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 2.5e-31 139.8 217 40.1
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 3.3e-31 139.4 160 46.9
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 9.7e-31 137.9 147 47.6
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 1.3e-30 137.5 218 35.8
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 6.3e-30 135.2 172 44.8
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.4e-29 133.3 100 60.0
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 5.3e-29 132.1 137 48.2
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 7.7e-28 128.3 129 49.6
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.0e-27 127.9 221 34.4
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 1.3e-27 127.5 213 37.1
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 8.5e-27 124.8 164 42.1
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.1e-26 124.4 146 43.8
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 7.2e-26 121.7 138 47.1
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 6.1e-25 118.6 193 36.3
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 3.6e-17 92.8 68 58.8
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 5.7e-15 85.5 160 34.4
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 6.3e-14 82.0 200 29.0
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 3.5e-12 76.3 221 30.3
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 3.5e-12 76.3 47 74.5
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.8e-11 72.8 45 73.3
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 8.0e-09 65.1 33 84.8
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.0e-08 64.7 32 87.5
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 5.2e-08 62.4 31 87.1
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 2.0e-07 60.5 32 84.4
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 2.6e-07 60.1 33 78.8
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 3.3e-07 59.7 36 69.4
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 7.5e-07 58.5 33 75.8


User provided reference genes

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