Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.5e-56 222.6 111 100.0
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 8.1e-31 137.1 80 85.0
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 3.4e-29 131.7 80 82.5
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.2e-27 124.8 72 88.9
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 6.0e-26 120.9 80 76.2
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 3.3e-24 115.2 80 73.8
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.6e-24 113.6 80 72.5
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.3e-23 113.2 80 71.2
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.4e-22 109.0 80 70.0
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 7.6e-21 104.0 92 60.9
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.0e-20 103.6 80 66.2
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.7e-20 102.8 80 65.0
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.9e-20 101.3 80 63.8
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 8.4e-20 100.5 80 63.8
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.1e-19 100.1 80 65.0
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 4.2e-19 98.2 80 60.0
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 2.1e-18 95.9 80 60.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.7e-18 95.5 80 58.8
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.7e-18 95.5 81 56.8
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 7.9e-18 94.0 80 62.5
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 7.9e-18 94.0 80 58.8
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.0e-17 93.6 80 57.5
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.0e-17 93.6 80 57.5
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.0e-17 93.6 80 57.5
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.3e-17 93.2 80 60.0
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 1.3e-17 93.2 80 60.0
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.3e-17 93.2 85 55.3
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 2.3e-17 92.4 80 60.0
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.0e-17 92.0 80 61.2
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 3.0e-17 92.0 80 52.5
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 3.9e-17 91.7 81 55.6
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.1e-17 91.3 80 55.0
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 5.1e-17 91.3 81 55.6
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 5.1e-17 91.3 80 56.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 5.1e-17 91.3 80 56.2
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 6.7e-17 90.9 82 54.9
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.7e-17 90.9 81 54.3
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.7e-17 90.9 81 54.3
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 6.7e-17 90.9 80 55.0
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 8.7e-17 90.5 80 60.0
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.1e-16 90.1 86 58.1
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.1e-16 90.1 78 57.7
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.1e-16 90.1 81 53.1
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.5e-16 89.0 81 53.1
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.5e-16 89.0 81 53.1
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.5e-16 89.0 81 53.1
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.5e-16 89.0 80 53.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 3.3e-16 88.6 80 53.8
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 4.3e-16 88.2 80 56.2
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 4.3e-16 88.2 80 53.8
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 5.7e-16 87.8 80 55.0
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 9.7e-16 87.0 80 52.5
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.2e-15 85.9 86 54.7
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.2e-15 85.9 86 54.7
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.8e-15 85.5 80 56.2
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 4.8e-15 84.7 92 52.2
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 4.8e-15 84.7 83 53.0
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 4.8e-15 84.7 81 50.6
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.8e-15 84.7 80 52.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 6.3e-15 84.3 83 53.0
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 6.3e-15 84.3 80 53.8
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 3.1e-14 82.0 82 52.4
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.1e-14 81.6 79 49.4
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 4.1e-14 81.6 62 59.7
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 5.3e-14 81.3 80 53.8
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 6.9e-14 80.9 80 52.5
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 9.0e-14 80.5 80 52.5
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-13 80.1 80 51.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.2e-13 80.1 80 53.8
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 3.4e-13 78.6 80 52.5
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 3.4e-13 78.6 80 51.2
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 5.9e-13 77.8 80 50.0
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.7e-12 76.3 81 53.1
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.2e-12 75.9 79 53.2
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.2e-12 75.9 66 51.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 2.2e-12 75.9 66 51.5
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.2e-12 75.9 80 48.8
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-12 75.5 80 53.8
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 5.0e-12 74.7 80 46.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.1e-11 73.6 80 51.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.1e-11 73.6 80 47.5
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.9e-11 72.8 55 69.1
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.9e-11 72.8 72 56.9
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.9e-11 72.8 85 45.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.5e-11 72.4 78 48.7
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 5.5e-11 71.2 83 48.2
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 7.2e-11 70.9 79 48.1
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 7.2e-11 70.9 85 44.7
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 9.4e-11 70.5 81 44.4
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 2.7e-10 68.9 81 43.2
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 6.1e-10 67.8 74 50.0
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.0e-09 67.0 42 73.8
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 4.3e-08 61.6 85 43.5
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 5.7e-08 61.2 89 33.7
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.8e-07 58.2 90 38.9
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 4.8e-07 58.2 76 44.7
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 8.2e-07 57.4 90 33.3
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.8e-06 56.2 97 33.0
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 2.4e-06 55.8 85 28.2
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.4e-06 55.8 93 32.3
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 4.1e-06 55.1 94 31.9
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 9.1e-06 53.9 90 33.3


User provided reference genes

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