Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 9.2e-62 240.0 115 100.0
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 1.3e-52 209.5 112 88.4
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 5.3e-33 144.4 109 67.9
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 4.9e-31 137.9 112 67.0
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 3.2e-30 135.2 109 67.0
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 9.3e-30 133.7 114 64.9
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 2.1e-29 132.5 109 64.2
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.7e-29 132.1 115 65.2
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.7e-29 132.1 115 65.2
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 4.6e-29 131.3 114 63.2
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 1.8e-28 129.4 109 63.3
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.3e-28 129.0 115 62.6
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 2.3e-28 129.0 113 63.7
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 3.9e-28 128.3 112 63.4
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 3.9e-28 128.3 112 63.4
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 6.7e-28 127.5 109 61.5
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 1.1e-27 126.7 112 60.7
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.5e-27 126.3 110 64.5
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 3.3e-27 125.2 113 60.2
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 4.3e-27 124.8 114 60.5
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 7.4e-27 124.0 117 59.8
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 9.6e-27 123.6 112 59.8
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 9.6e-27 123.6 114 58.8
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 1.3e-26 123.2 112 59.8
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 1.6e-26 122.9 117 57.3
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.1e-26 122.5 118 55.9
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 2.1e-26 122.5 111 61.3
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 2.1e-26 122.5 112 59.8
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 2.1e-26 122.5 113 60.2
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 4.8e-26 121.3 111 56.8
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 6.3e-26 120.9 117 60.7
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.4e-25 119.8 116 59.5
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 2.4e-25 119.0 117 55.6
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 3.1e-25 118.6 118 56.8
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 4.1e-25 118.2 112 58.9
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 4.1e-25 118.2 113 59.3
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 5.3e-25 117.9 113 59.3
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 5.3e-25 117.9 114 57.0
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 6.9e-25 117.5 114 55.3
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 6.9e-25 117.5 122 58.2
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 9.0e-25 117.1 114 56.1
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 9.0e-25 117.1 115 56.5
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 9.0e-25 117.1 114 57.9
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.2e-24 116.7 107 59.8
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.2e-24 116.7 122 60.7
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 2.6e-24 115.5 116 56.0
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 4.5e-24 114.8 116 55.2
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 5.9e-24 114.4 115 56.5
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 5.9e-24 114.4 116 54.3
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 1.0e-23 113.6 115 58.3
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.2e-23 112.5 116 55.2
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 2.9e-23 112.1 112 58.0
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.9e-23 112.1 116 56.0
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 3.8e-23 111.7 109 55.0
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 5.0e-23 111.3 113 56.6
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 5.0e-23 111.3 112 57.1
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 8.4e-23 110.5 116 56.0
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 8.4e-23 110.5 116 57.8
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 1.1e-22 110.2 107 57.0
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 1.4e-22 109.8 115 55.7
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 1.9e-22 109.4 117 55.6
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.9e-22 109.4 109 54.1
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 1.9e-22 109.4 102 61.8
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 1.9e-22 109.4 114 55.3
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 2.5e-22 109.0 116 55.2
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 2.5e-22 109.0 115 55.7
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 2.5e-22 109.0 116 55.2
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 2.5e-22 109.0 116 55.2
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 2.5e-22 109.0 115 55.7
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 3.2e-22 108.6 113 53.1
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 3.2e-22 108.6 112 56.2
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 3.2e-22 108.6 112 56.2
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 7.2e-22 107.5 116 54.3
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 7.2e-22 107.5 116 54.3
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 7.2e-22 107.5 116 54.3
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 7.2e-22 107.5 116 54.3
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 7.2e-22 107.5 116 54.3
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 7.2e-22 107.5 112 53.6
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 9.3e-22 107.1 104 59.6
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 9.3e-22 107.1 111 53.2
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 9.3e-22 107.1 111 53.2
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 9.3e-22 107.1 103 63.1
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.6e-21 106.3 102 61.8
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.6e-21 106.3 116 52.6
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.1e-21 105.9 115 54.8
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 2.1e-21 105.9 115 53.0
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 2.1e-21 105.9 119 48.7
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.7e-21 105.5 102 58.8
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 2.7e-21 105.5 113 53.1
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 2.7e-21 105.5 116 51.7
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.7e-21 105.5 102 61.8
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 2.7e-21 105.5 119 48.7
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 3.5e-21 105.1 109 52.3
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 3.5e-21 105.1 111 51.4
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 4.6e-21 104.8 116 54.3
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 4.6e-21 104.8 112 51.8
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 6.1e-21 104.4 112 52.7
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 6.1e-21 104.4 115 56.5
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 6.1e-21 104.4 111 55.9
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 7.9e-21 104.0 113 53.1
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 7.9e-21 104.0 118 54.2
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 1.0e-20 103.6 103 57.3
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 1.0e-20 103.6 114 52.6
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 1.3e-20 103.2 113 51.3
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 1.3e-20 103.2 112 52.7
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 1.8e-20 102.8 108 51.9
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 3.0e-20 102.1 103 57.3
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 5.1e-20 101.3 100 56.0
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 6.7e-20 100.9 117 53.0
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 6.7e-20 100.9 117 53.0
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 6.7e-20 100.9 108 53.7
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 6.7e-20 100.9 103 58.3
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 1.1e-19 100.1 113 47.8
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 1.9e-19 99.4 73 69.9
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 2.5e-19 99.0 112 50.9
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 2.5e-19 99.0 104 54.8
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.3e-19 98.6 112 49.1
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.3e-19 98.6 112 49.1
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 4.3e-19 98.2 112 50.0
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 4.3e-19 98.2 112 50.0
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 4.3e-19 98.2 112 50.0
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 4.3e-19 98.2 116 52.6
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 5.7e-19 97.8 118 49.2
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 5.7e-19 97.8 102 54.9
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 7.4e-19 97.4 118 49.2
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 7.4e-19 97.4 118 49.2
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 7.4e-19 97.4 112 50.0
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 1.6e-18 96.3 114 51.8
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.6e-18 96.3 109 51.4
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 2.2e-18 95.9 112 48.2
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 3.7e-18 95.1 104 54.8
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 3.7e-18 95.1 105 57.1
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 3.7e-18 95.1 118 48.3
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 6.3e-18 94.4 102 56.9
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 6.3e-18 94.4 118 48.3
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 8.2e-18 94.0 111 46.8
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 8.2e-18 94.0 116 50.0
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.1e-17 93.6 113 46.9
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 1.1e-17 93.6 128 47.7
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 1.4e-17 93.2 116 52.6
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 1.4e-17 93.2 91 54.9
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 2.4e-17 92.4 103 57.3
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 4.1e-17 91.7 114 49.1
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 5.3e-17 91.3 113 46.0
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 9.0e-17 90.5 104 52.9
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 9.0e-17 90.5 104 52.9
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 9.0e-17 90.5 115 46.1
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.2e-16 90.1 106 52.8
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.5e-16 89.7 115 49.6
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.5e-16 89.7 114 47.4
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 1.5e-16 89.7 107 53.3
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 2.0e-16 89.4 114 47.4
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 2.6e-16 89.0 106 53.8
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 3.4e-16 88.6 105 50.5
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.4e-16 88.6 115 49.6
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 3.4e-16 88.6 101 50.5
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 4.5e-16 88.2 100 48.0
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 7.7e-16 87.4 116 50.0
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 6.5e-15 84.3 112 43.8
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 6.5e-15 84.3 103 53.4
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.1e-14 83.6 103 49.5
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 1.4e-14 83.2 115 48.7
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 1.4e-14 83.2 115 48.7
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 1.4e-14 83.2 115 48.7
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 3.2e-14 82.0 101 48.5
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 5.5e-14 81.3 115 44.3
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 9.4e-14 80.5 107 47.7
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 9.4e-14 80.5 85 51.8
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 9.4e-14 80.5 100 53.0
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 2.7e-13 79.0 73 53.4
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 2.8e-10 68.9 93 50.5
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 8.2e-10 67.4 94 47.9
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 1.4e-09 66.6 99 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.4e-09 65.9 58 50.0
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 2.4e-09 65.9 41 70.7
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 4.5e-08 61.6 148 32.4
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 1.0e-07 60.5 109 38.5
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.9e-07 58.9 141 33.3
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 9.4e-06 53.9 132 32.6


User provided reference genes

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