Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 3.6e-52 208.0 106 100.0
Rhsim02G0116800 Rhododendron simsii HOM05D007156 ORTHO05D003871 4.4e-26 121.3 70 88.6
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.7e-25 118.2 101 63.4
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.0e-22 110.2 99 64.6
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 8.3e-17 90.5 113 47.8
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 1.1e-16 90.1 101 54.5
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.3e-13 78.6 68 66.2
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 3.1e-11 72.0 67 61.2
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 6.8e-11 70.9 69 62.3
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.9e-11 70.5 86 45.3
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.9e-11 70.5 86 45.3
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.6e-10 68.9 68 54.4
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 3.4e-10 68.6 61 59.0
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 4.4e-10 68.2 69 60.9
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 7.6e-10 67.4 73 56.2
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 1.3e-09 66.6 100 45.0
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.8e-09 65.1 92 39.1
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.8e-09 65.1 92 39.1
Actinidia24046 Actinidia chinensis HOM05D001601 ORTHO05D006936 8.4e-09 63.9 53 64.2
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.4e-08 62.4 89 41.6
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.4e-08 62.4 84 41.7
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 4.1e-08 61.6 74 51.4
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 4.1e-08 61.6 46 58.7
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 4.1e-08 61.6 72 48.6
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 5.4e-08 61.2 42 69.0
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 7.1e-08 60.8 40 67.5
Manes.17G030800 Manihot esculenta HOM05D012748 ORTHO05D014783 9.2e-08 60.5 76 48.7
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 9.2e-08 60.5 40 67.5
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.2e-07 60.1 40 67.5
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.2e-07 60.1 69 49.3
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.6e-07 59.7 93 44.1
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.6e-07 59.7 77 46.8
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.6e-07 59.7 41 65.9
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 1.6e-07 59.7 42 61.9
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.6e-07 59.7 40 67.5
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 1.6e-07 59.7 37 70.3
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.6e-07 59.7 40 67.5
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 2.1e-07 59.3 74 45.9
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 2.7e-07 58.9 68 50.0
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 2.7e-07 58.9 79 43.0
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 3.5e-07 58.5 94 39.4
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 4.6e-07 58.2 43 58.1
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 6.0e-07 57.8 50 54.0
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 7.8e-07 57.4 83 44.6
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 7.8e-07 57.4 46 58.7
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.8e-07 57.4 89 38.2
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 7.8e-07 57.4 66 47.0
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.0e-06 57.0 69 52.2
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.0e-06 57.0 79 40.5
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.3e-06 56.6 64 50.0
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 1.3e-06 56.6 96 38.5
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.3e-06 56.6 41 61.0
EL10As6g23655 Beta vulgaris HOM05D012748 ORTHO05D014783 1.7e-06 56.2 60 56.7
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.7e-06 56.2 42 61.9
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.7e-06 56.2 41 63.4
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.7e-06 56.2 50 52.0
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 1.7e-06 56.2 57 50.9
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 2.3e-06 55.8 37 64.9
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 2.3e-06 55.8 74 43.2
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 2.3e-06 55.8 50 64.0
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 2.3e-06 55.8 59 54.2
Ah.14g088550 Amaranthus hybridus HOM05D012748 ORTHO05D014783 3.0e-06 55.5 46 60.9
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 3.0e-06 55.5 70 44.3
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.0e-06 55.5 61 45.9
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 3.9e-06 55.1 48 58.3
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 3.9e-06 55.1 69 53.6
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 3.9e-06 55.1 66 43.9
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 3.9e-06 55.1 67 46.3
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 3.9e-06 55.1 57 49.1
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.9e-06 55.1 57 49.1
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.9e-06 55.1 57 49.1
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.9e-06 55.1 57 49.1
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.9e-06 55.1 57 49.1
Lsat_1_v5_gn_8_130461 Lactuca sativa HOM05D025642 ORTHO05D003871 3.9e-06 55.1 75 40.0
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 3.9e-06 55.1 59 50.8
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 3.9e-06 55.1 42 57.1
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 3.9e-06 55.1 41 65.9
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 5.1e-06 54.7 83 45.8
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.1e-06 54.7 62 45.2
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.1e-06 54.7 62 45.2
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 5.1e-06 54.7 62 45.2
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 5.1e-06 54.7 60 53.3
Sc17g0006870 Simmondsia chinensis HOM05D012748 ORTHO05D014783 5.1e-06 54.7 66 51.5
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.6e-06 54.3 56 57.1
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 8.6e-06 53.9 40 62.5
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 8.6e-06 53.9 67 44.8


User provided reference genes

Program Settings