Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0116100 Rhododendron simsii HOM05D045875 ORTHO05D339709 1.8e-131 472.6 240 100.0
Rhsim02G0154700 Rhododendron simsii HOM05D002096 ORTHO05D002203 1.2e-42 177.6 125 72.0
Rhsim02G0115900 Rhododendron simsii HOM05D045875 ORTHO05D339715 5.0e-25 119.0 70 84.3
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 1.7e-20 104.0 60 81.7
Rhsim08G0232100 Rhododendron simsii HOM05D001205 ORTHO05D001087 1.4e-11 74.3 63 74.6
Rhsim03G0007100 Rhododendron simsii HOM05D002860 ORTHO05D003123 7.2e-08 62.0 39 71.8
ECA232G3761 Erigeron canadensis HOM05D001205 ORTHO05D001087 2.1e-07 60.5 55 69.1
Lsat_1_v5_gn_4_95580 Lactuca sativa HOM05D001205 ORTHO05D001087 2.1e-07 60.5 55 69.1
Rhsim03G0132500 Rhododendron simsii HOM05D000739 ORTHO05D003022 2.1e-07 60.5 44 65.9
Lj3g0022427 Lotus japonicus HOM05D001205 ORTHO05D001087 2.7e-07 60.1 63 60.3
HanXRQChr09g0276371 Helianthus annuus HOM05D001205 ORTHO05D001087 3.6e-07 59.7 55 67.3
CSS0009950 Camellia sinensis var. sinensis HOM05D001205 ORTHO05D001087 4.7e-07 59.3 55 67.3
CSS0026852 Camellia sinensis var. sinensis HOM05D001205 ORTHO05D001087 6.1e-07 58.9 55 67.3
CSS0044826 Camellia sinensis var. sinensis HOM05D001205 ORTHO05D001087 6.1e-07 58.9 55 67.3
HPP92_005550 Vanilla planifolia HOM05D001205 ORTHO05D001087 6.1e-07 58.9 53 62.3
Hma1.2p1_0388F.1_g142210 Hydrangea macrophylla HOM05D001205 ORTHO05D001087 8.0e-07 58.5 55 65.5
Lj5A47T39 Lonicera japonica HOM05D001205 ORTHO05D001087 8.0e-07 58.5 63 57.1
PSO832G2046 Papaver somniferum HOM05D001205 ORTHO05D001087 8.0e-07 58.5 55 65.5
FAN28G0616 Fragaria x ananassa HOM05D001205 ORTHO05D001087 1.0e-06 58.2 55 65.5
Glyma.16G027700 Glycine max HOM05D001205 ORTHO05D001087 1.0e-06 58.2 63 58.7
PSO063G5440 Papaver somniferum HOM05D001205 ORTHO05D001087 1.0e-06 58.2 55 63.6
PSO832G4406 Papaver somniferum HOM05D001205 ORTHO05D001087 1.0e-06 58.2 55 65.5
Phvul.001G170600 Phaseolus vulgaris HOM05D001205 ORTHO05D001087 1.0e-06 58.2 63 58.7
Phvul.010G110600 Phaseolus vulgaris HOM05D001205 ORTHO05D001087 1.0e-06 58.2 63 58.7
Ca_23588_v3 Cicer arietinum L. HOM05D001205 ORTHO05D001087 1.4e-06 57.8 63 57.1
Medtr8g028040 Medicago truncatula HOM05D001205 ORTHO05D001087 1.4e-06 57.8 63 57.1
QL02p063027 Quercus lobata HOM05D001205 ORTHO05D001087 1.4e-06 57.8 63 58.7
THA.LOC104811741 Tarenaya hassleriana HOM05D001205 ORTHO05D001087 1.4e-06 57.8 63 58.7
TPR.G1097 Trifolium pratense HOM05D001205 ORTHO05D001087 1.4e-06 57.8 63 57.1
VMungo0331G1032 Vigna mungo HOM05D001205 ORTHO05D001087 1.4e-06 57.8 63 58.7
FvH4_1g07140 Fragaria vesca HOM05D001205 ORTHO05D001087 1.8e-06 57.4 63 57.1
FAN19G0124 Fragaria x ananassa HOM05D001205 ORTHO05D001087 1.8e-06 57.4 63 57.1
FAN26G1224 Fragaria x ananassa HOM05D001205 ORTHO05D001087 1.8e-06 57.4 63 57.1
FAN26G2695 Fragaria x ananassa HOM05D001205 ORTHO05D001705 1.8e-06 57.4 63 57.1
TWI34G0677 Tripterygium wilfordii HOM05D001205 ORTHO05D001087 1.8e-06 57.4 81 48.1
AUR62033777 Chenopodium quinoa HOM05D001205 ORTHO05D001087 2.3e-06 57.0 63 57.1
PSO063G2203 Papaver somniferum HOM05D001205 ORTHO05D001087 2.3e-06 57.0 55 63.6
PSO170G5797 Papaver somniferum HOM05D001205 ORTHO05D001087 2.3e-06 57.0 55 63.6
RcHm_v2.0_Chr2g0093021 Rosa chinensis HOM05D001205 ORTHO05D001087 2.3e-06 57.0 63 57.1
vmacro18815 Vaccinium macrocarpon HOM05D001205 ORTHO05D001087 2.3e-06 57.0 56 66.1
Actinidia21748 Actinidia chinensis HOM05D001205 ORTHO05D001087 3.0e-06 56.6 63 60.3
arahy.Tifrunner.gnm1.ann1.98EFWE Arachis hypogaea HOM05D001205 ORTHO05D001087 3.0e-06 56.6 63 57.1
arahy.Tifrunner.gnm1.ann1.PN33QT Arachis hypogaea HOM05D001205 ORTHO05D001087 3.0e-06 56.6 63 57.1
ClCG02G000850 Citrullus lanatus HOM05D000067 ORTHO05D000280 3.0e-06 56.6 63 55.6
Cc04_g02110 Coffea canephora HOM05D001205 ORTHO05D001087 3.0e-06 56.6 55 61.8
Prupe.7G212700 Prunus persica HOM05D001205 ORTHO05D001087 3.0e-06 56.6 63 57.1
Ah.04g163990 Amaranthus hybridus HOM05D001205 ORTHO05D001087 3.9e-06 56.2 63 55.6
CANSAT56G1842 Cannabis sativa HOM05D001205 ORTHO05D001087 3.9e-06 56.2 54 61.1
CANSAT56G4457 Cannabis sativa HOM05D001205 ORTHO05D001087 3.9e-06 56.2 54 61.1
COL.COLO4_18223 Corchorus olitorius HOM05D001205 ORTHO05D001087 3.9e-06 56.2 63 57.1
Duzib168G0024 Durio zibethinus HOM05D001205 ORTHO05D001087 3.9e-06 56.2 63 57.1
Sed0002951 Sechium edule HOM05D001205 ORTHO05D001087 3.9e-06 56.2 63 55.6
Thecc.09G092300 Theobroma cacao HOM05D001205 ORTHO05D001087 3.9e-06 56.2 63 57.1
unitig_699.g19416 Utricularia gibba HOM05D001205 ORTHO05D001087 3.9e-06 56.2 63 55.6
GSVIVG01015228001 Vitis vinifera HOM05D001205 ORTHO05D001087 3.9e-06 56.2 55 63.6
Glyma.07G058800 Glycine max HOM05D001205 ORTHO05D001087 5.2e-06 55.8 63 57.1
Lalb_Chr10g0100221 Lupinus albus HOM05D001205 ORTHO05D001087 5.2e-06 55.8 63 55.6
THA.LOC104817749 Tarenaya hassleriana HOM05D001205 ORTHO05D001087 5.2e-06 55.8 63 57.1
AL8G32600 Arabidopsis lyrata HOM05D001205 ORTHO05D001087 6.7e-06 55.5 63 55.6
AT5G56760 Arabidopsis thaliana HOM05D001205 ORTHO05D001087 6.7e-06 55.5 63 55.6
CARHR270510 Cardamine hirsuta HOM05D001205 ORTHO05D001087 6.7e-06 55.5 63 55.6
MELO3C003551.2 Cucumis melo HOM05D001205 ORTHO05D001087 6.7e-06 55.5 63 57.1
CsaV3_2G017890 Cucumis sativus L. HOM05D001205 ORTHO05D001087 6.7e-06 55.5 63 57.1
Oeu037597.1 Olea europaea HOM05D001205 ORTHO05D001087 6.7e-06 55.5 55 61.8
SalBow6G3897 Salvia bowleyana HOM05D001205 ORTHO05D001087 6.7e-06 55.5 55 63.6
Hund10417 Selenicereus undatus HOM05D001205 ORTHO05D001087 6.7e-06 55.5 63 55.6
BraA10t43501Z Brassica rapa HOM05D001205 ORTHO05D001087 8.8e-06 55.1 80 47.5
Cfa003100 Carpinus fangiana HOM05D001205 ORTHO05D001087 8.8e-06 55.1 63 57.1
Haze_25900 Corylus avellana HOM05D001205 ORTHO05D001087 8.8e-06 55.1 63 57.1
Gohir.A13G193700 Gossypium hirsutum HOM05D001205 ORTHO05D001087 8.8e-06 55.1 63 55.6
Gohir.D13G199500 Gossypium hirsutum HOM05D001205 ORTHO05D001087 8.8e-06 55.1 63 55.6
Gorai.013G228200 Gossypium raimondii HOM05D001205 ORTHO05D001087 8.8e-06 55.1 63 55.6
Manes.03G031800 Manihot esculenta HOM05D001205 ORTHO05D001087 8.8e-06 55.1 63 57.1
SHI24909 Sapria himalayana HOM05D001205 ORTHO05D001087 8.8e-06 55.1 63 55.6
Sed0005975 Sechium edule HOM05D001205 ORTHO05D001087 8.8e-06 55.1 63 55.6


User provided reference genes

Program Settings