Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 9.6e-259 896.3 464 100.0
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 3.0e-103 379.8 213 88.3
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 3.6e-96 356.3 215 86.5
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 5.9e-91 339.0 226 77.9
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 5.0e-74 282.7 213 67.6
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 3.1e-68 263.5 212 65.6
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.7e-67 260.4 185 68.1
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 1.3e-66 258.1 194 66.5
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 1.7e-66 257.7 195 67.7
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 6.6e-66 255.8 211 64.9
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 8.6e-66 255.4 209 63.6
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 1.9e-65 254.2 186 69.9
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 2.5e-65 253.8 203 66.5
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 2.5e-65 253.8 193 69.9
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 4.3e-65 253.1 192 68.2
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 7.3e-65 252.3 187 67.9
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 7.3e-65 252.3 209 64.6
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 9.5e-65 251.9 201 66.2
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.2e-64 251.5 209 67.5
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 1.2e-64 251.5 209 67.5
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 1.2e-64 251.5 215 65.6
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 2.1e-64 250.8 192 68.8
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 2.8e-64 250.4 213 60.6
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 3.6e-64 250.0 217 62.7
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 3.6e-64 250.0 197 69.5
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.7e-64 249.6 172 71.5
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 4.7e-64 249.6 208 64.4
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 4.7e-64 249.6 202 69.3
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 6.1e-64 249.2 209 66.5
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 1.8e-63 247.7 187 70.1
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 2.3e-63 247.3 176 70.5
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 6.8e-63 245.7 209 62.7
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 6.8e-63 245.7 209 62.7
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 6.8e-63 245.7 233 60.1
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 6.8e-63 245.7 196 64.8
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 1.2e-62 245.0 142 81.7
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 1.5e-62 244.6 214 62.1
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 1.5e-62 244.6 215 61.9
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 4.4e-62 243.0 202 61.9
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 7.5e-62 242.3 156 78.8
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 9.8e-62 241.9 185 68.1
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 1.3e-61 241.5 189 65.6
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 1.3e-61 241.5 186 70.4
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 2.2e-61 240.7 209 63.2
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 2.9e-61 240.4 197 61.9
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 2.9e-61 240.4 195 62.1
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 4.9e-61 239.6 215 60.0
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 6.4e-61 239.2 183 69.4
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 8.3e-61 238.8 182 68.7
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 8.3e-61 238.8 212 60.8
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 8.3e-61 238.8 213 63.8
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 1.1e-60 238.4 211 60.7
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 1.1e-60 238.4 201 61.2
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.4e-60 238.0 212 60.8
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 1.4e-60 238.0 188 69.7
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 1.8e-60 237.7 206 63.6
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 1.8e-60 237.7 185 69.2
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 2.4e-60 237.3 188 64.9
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 4.1e-60 236.5 212 60.4
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 5.4e-60 236.1 187 69.0
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 7.0e-60 235.7 195 64.6
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 1.2e-59 235.0 198 64.1
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 2.0e-59 234.2 189 64.0
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 2.0e-59 234.2 212 62.7
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 2.0e-59 234.2 184 67.9
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 2.7e-59 233.8 183 64.5
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 2.7e-59 233.8 210 59.0
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 3.5e-59 233.4 195 64.1
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 4.6e-59 233.0 177 66.7
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 5.9e-59 232.6 177 66.7
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 1.3e-58 231.5 181 65.7
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 3.9e-58 229.9 210 57.6
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 5.0e-58 229.6 211 58.3
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 5.0e-58 229.6 188 62.2
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 6.6e-58 229.2 214 56.5
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 6.6e-58 229.2 181 64.1
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 1.5e-57 228.0 170 68.2
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 2.5e-57 227.3 162 70.4
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 3.3e-57 226.9 169 68.6
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 4.3e-57 226.5 168 67.3
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 5.6e-57 226.1 198 64.1
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 1.6e-56 224.6 171 67.8
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 2.1e-56 224.2 148 73.0
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 4.7e-56 223.0 148 72.3
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 6.2e-56 222.6 148 72.3
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 6.2e-56 222.6 148 72.3
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 6.2e-56 222.6 148 72.3
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 1.0e-55 221.9 169 67.5
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 1.4e-55 221.5 170 65.3
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 1.8e-55 221.1 132 78.0
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 1.5e-54 218.0 122 79.5
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 1.9e-52 211.1 169 62.7
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 3.5e-51 206.8 143 69.9
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.6e-49 199.5 236 50.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.2e-48 198.4 174 60.3
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 2.8e-48 197.2 129 71.3
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 4.9e-45 186.4 172 62.8
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 1.4e-44 184.9 173 63.6
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 5.4e-44 183.0 132 65.9
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 8.6e-42 175.6 143 69.2
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 2.5e-41 174.1 127 63.0
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 1.2e-40 171.8 127 63.0
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 2.6e-38 164.1 103 78.6
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 1.3e-37 161.8 139 56.1
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 4.1e-36 156.8 134 66.4
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 7.1e-36 156.0 95 75.8
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 2.7e-35 154.1 142 53.5
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 6.4e-29 132.9 106 60.4
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 3.0e-26 124.0 184 44.0
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 9.9e-22 109.0 77 68.8
Rhsim07G0065600 Rhododendron simsii HOM05D000009 ORTHO05D000008 4.2e-20 103.6 54 94.4
RhsimUnG0192100 Rhododendron simsii HOM05D008549 ORTHO05D000001 2.1e-16 91.3 52 86.5
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.2e-11 75.5 113 44.2


User provided reference genes

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