Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0111700 Rhododendron simsii HOM05D006758 ORTHO05D008326 1.7e-53 212.2 97 100.0
TPR.G5478 Trifolium pratense HOM05D006758 ORTHO05D008326 1.9e-52 208.8 97 97.9
Ca_10997_v3 Cicer arietinum L. HOM05D006758 ORTHO05D008326 7.3e-52 206.8 97 96.9
Lalb_Chr06g0164881 Lupinus albus HOM05D006758 ORTHO05D008326 9.5e-52 206.5 97 96.9
arahy.Tifrunner.gnm1.ann1.ND4ZK6 Arachis hypogaea HOM05D006758 ORTHO05D008326 1.6e-51 205.7 97 96.9
CiPaw.09G087600 Carya illinoinensis HOM05D006758 ORTHO05D008326 1.6e-51 205.7 97 96.9
Lj5g0020351 Lotus japonicus HOM05D006758 ORTHO05D008326 1.6e-51 205.7 97 95.9
Psat0s2691g0120 Pisum sativum HOM05D006758 ORTHO05D008326 2.1e-51 205.3 97 95.9
Phvul.007G052700 Phaseolus vulgaris HOM05D006758 ORTHO05D008326 2.8e-51 204.9 97 96.9
TAR626G1807 Trochodendron aralioides HOM05D006758 ORTHO05D008326 2.8e-51 204.9 95 96.8
SGA_v2.0_scaffold7G03879 Striga asiatica HOM05D006758 ORTHO05D008326 3.6e-51 204.5 97 95.9
TAR624G0544 Trochodendron aralioides HOM05D006758 ORTHO05D008326 3.6e-51 204.5 97 96.9
DCAR_008127 Daucus carota HOM05D006758 ORTHO05D008326 4.7e-51 204.1 97 94.8
MD05G1341600 Malus domestica HOM05D006758 ORTHO05D008326 4.7e-51 204.1 97 95.9
Prupe.4G025700 Prunus persica HOM05D006758 ORTHO05D008326 4.7e-51 204.1 97 95.9
CDE05G3555 Ceratophyllum demersum HOM05D006758 ORTHO05D008326 6.2e-51 203.8 97 94.8
Dinv20021 Davidia involucrata HOM05D006758 ORTHO05D008326 8.1e-51 203.4 97 93.8
Hma1.2p1_2726F.1_g327620 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 8.1e-51 203.4 97 94.8
Hma1.2p1_2714F.1_g327410 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 1.1e-50 203.0 97 94.8
GSVIVG01012634001 Vitis vinifera HOM05D006758 ORTHO05D008326 1.1e-50 203.0 97 94.8
EL10Ac8g19995 Beta vulgaris HOM05D006758 ORTHO05D008326 1.4e-50 202.6 97 94.8
Nitab4.5_0002347g0160 Nicotiana tabacum HOM05D006758 ORTHO05D008326 1.8e-50 202.2 97 94.8
Nitab4.5_0008530g0010 Nicotiana tabacum HOM05D006758 ORTHO05D008326 1.8e-50 202.2 97 94.8
Glyma.10G251800 Glycine max HOM05D006758 ORTHO05D008326 2.4e-50 201.8 97 94.8
Glyma.20G141700 Glycine max HOM05D006758 ORTHO05D008326 2.4e-50 201.8 97 94.8
MD10G1315000 Malus domestica HOM05D006758 ORTHO05D008326 2.4e-50 201.8 97 93.8
Oeu037351.1 Olea europaea HOM05D006758 ORTHO05D008326 2.4e-50 201.8 97 94.8
MELO3C007373.2 Cucumis melo HOM05D006758 ORTHO05D008326 4.0e-50 201.1 97 94.8
CsaV3_6G049220 Cucumis sativus L. HOM05D006758 ORTHO05D008326 4.0e-50 201.1 97 94.8
Ciclev10017296m.g Citrus clementina HOM05D006758 ORTHO05D008326 5.2e-50 200.7 97 93.8
Migut.M01286 Erythranthe guttata HOM05D006758 ORTHO05D008326 5.2e-50 200.7 97 93.8
PGR004G2441 Punica granatum HOM05D006758 ORTHO05D008326 5.2e-50 200.7 97 94.8
Sed0024295 Sechium edule HOM05D006758 ORTHO05D008326 5.2e-50 200.7 97 94.8
Nn1g03624 Nelumbo nucifera HOM05D006758 ORTHO05D008326 6.8e-50 200.3 97 93.8
Sabra04G0011700 Salix brachista HOM05D006758 ORTHO05D008326 6.8e-50 200.3 97 93.8
THA.LOC104809516 Tarenaya hassleriana HOM05D006758 ORTHO05D008326 1.2e-49 199.5 97 93.8
ATR0661G232 Amborella trichopoda HOM05D006758 ORTHO05D008326 1.5e-49 199.1 97 90.7
CANSAT56G2354 Cannabis sativa HOM05D006758 ORTHO05D008326 1.5e-49 199.1 97 92.8
COL.COLO4_31733 Corchorus olitorius HOM05D006758 ORTHO05D008326 1.5e-49 199.1 97 92.8
Eucgr.D01293 Eucalyptus grandis HOM05D006758 ORTHO05D008326 1.5e-49 199.1 97 93.8
Lsat_1_v5_gn_4_59120 Lactuca sativa HOM05D006758 ORTHO05D008326 1.5e-49 199.1 96 93.8
Potri.004G021200 Populus trichocarpa HOM05D006758 ORTHO05D008326 1.5e-49 199.1 97 92.8
Zm00001eb413280 Zea mays HOM05D006758 ORTHO05D008326 1.5e-49 199.1 97 93.8
CAN.G569.41 Capsicum annuum HOM05D006758 ORTHO05D008326 2.0e-49 198.7 97 92.8
ECA234G0861 Erigeron canadensis HOM05D006758 ORTHO05D008326 2.0e-49 198.7 97 92.8
Os08g0190800 Oryza sativa ssp. japonica HOM05D006758 ORTHO05D008326 2.0e-49 198.7 97 92.8
Solyc02g080140.4 Solanum lycopersicum HOM05D006758 ORTHO05D008326 2.0e-49 198.7 97 92.8
Sopen02g024850 Solanum pennellii HOM05D006758 ORTHO05D008326 2.0e-49 198.7 97 92.8
TWI38G0518 Tripterygium wilfordii HOM05D006758 ORTHO05D008326 2.0e-49 198.7 97 93.8
Cc02_g11670 Coffea canephora HOM05D006758 ORTHO05D008326 3.4e-49 198.0 101 92.1
Gohir.A09G069700 Gossypium hirsutum HOM05D006758 ORTHO05D008326 3.4e-49 198.0 97 92.8
Gohir.D09G069600 Gossypium hirsutum HOM05D006758 ORTHO05D008326 3.4e-49 198.0 97 92.8
HanXRQChr16g0515881 Helianthus annuus HOM05D006758 ORTHO05D008326 3.4e-49 198.0 97 92.8
Actinidia11840 Actinidia chinensis HOM05D006758 ORTHO05D008326 4.4e-49 197.6 97 93.8
Gohir.A06G207900 Gossypium hirsutum HOM05D006758 ORTHO05D008326 4.4e-49 197.6 97 91.8
Gorai.010G252900 Gossypium raimondii HOM05D006758 ORTHO05D008326 4.4e-49 197.6 97 91.8
PSO210G7269 Papaver somniferum HOM05D006758 ORTHO05D008326 4.4e-49 197.6 97 91.8
PSO832G0089 Papaver somniferum HOM05D006758 ORTHO05D008326 4.4e-49 197.6 97 91.8
arahy.Tifrunner.gnm1.ann1.GJ8XD1 Arachis hypogaea HOM05D006758 ORTHO05D008326 5.8e-49 197.2 108 87.0
Duzib235G1228 Durio zibethinus HOM05D006758 ORTHO05D008326 5.8e-49 197.2 97 91.8
RcHm_v2.0_Chr5g0003931 Rosa chinensis HOM05D006758 ORTHO05D008326 7.6e-49 196.8 100 92.0
Thecc.06G214600 Theobroma cacao HOM05D006758 ORTHO05D008326 7.6e-49 196.8 97 90.7
DCAR_004197 Daucus carota HOM05D006758 ORTHO05D008326 9.9e-49 196.4 99 91.9
Manes.17G035700 Manihot esculenta HOM05D006758 ORTHO05D008326 9.9e-49 196.4 97 91.8
Duzib192G0534 Durio zibethinus HOM05D006758 ORTHO05D008326 1.7e-48 195.7 97 90.7
Thhalv10023778m.g Eutrema salsugineum HOM05D006758 ORTHO05D008326 1.7e-48 195.7 99 90.9
BcaC04g22349 Brassica carinata HOM05D006758 ORTHO05D008326 2.2e-48 195.3 99 90.9
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 2.2e-48 195.3 99 90.9
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 2.2e-48 195.3 99 90.9
Carub.0002s0329 Capsella rubella HOM05D006758 ORTHO05D008326 2.2e-48 195.3 99 90.9
BcaB07g31284 Brassica carinata HOM05D006758 ORTHO05D008326 3.8e-48 194.5 99 90.9
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 3.8e-48 194.5 99 90.9
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 3.8e-48 194.5 99 90.9
CARHR050560 Cardamine hirsuta HOM05D006758 ORTHO05D008326 3.8e-48 194.5 99 90.9
AUR62022003 Chenopodium quinoa HOM05D006758 ORTHO05D008326 3.8e-48 194.5 97 91.8
FvH4_3g02640 Fragaria vesca HOM05D006758 ORTHO05D008326 3.8e-48 194.5 100 91.0
Sp2g02770 Schrenkiella parvula HOM05D006758 ORTHO05D008326 4.9e-48 194.1 99 89.9
Aa31LG1G3210 Aethionema arabicum HOM05D006758 ORTHO05D008326 6.4e-48 193.7 99 89.9
BcaB04g20373 Brassica carinata HOM05D006758 ORTHO05D008326 1.4e-47 192.6 99 88.9
Pp3c2_14210 Physcomitrium patens HOM05D006758 ORTHO05D008326 1.9e-47 192.2 97 90.7
AL2G14330 Arabidopsis lyrata HOM05D006758 ORTHO05D008326 3.2e-47 191.4 99 88.9
AT1G61780 Arabidopsis thaliana HOM05D006758 ORTHO05D008326 3.2e-47 191.4 99 88.9
unitig_61.g26114 Utricularia gibba HOM05D006758 ORTHO05D008326 9.2e-47 189.9 123 75.6
ClCG01G022160 Citrullus lanatus HOM05D006758 ORTHO05D008326 2.1e-46 188.7 101 89.1
Sabra11G0016800 Salix brachista HOM05D006758 ORTHO05D008326 2.7e-46 188.3 97 88.7
AagrBONN_evm.TU.Sc2ySwM_344.4905 Anthoceros agrestis HOM05D006758 ORTHO05D008326 7.8e-46 186.8 97 85.6
Mapoly0102s0010 Marchantia polymorpha HOM05D006758 ORTHO05D008326 1.7e-45 185.7 97 85.6
Dinv17829 Davidia involucrata HOM05D006758 ORTHO05D008326 2.3e-45 185.3 91 93.4
Gorai.006G083800 Gossypium raimondii HOM05D006758 ORTHO05D008326 6.6e-45 183.7 91 92.3
Oeu051222.1 Olea europaea HOM05D006758 ORTHO05D008326 8.6e-45 183.3 91 91.2
SHI02162 Sapria himalayana HOM05D006758 ORTHO05D008326 5.6e-44 180.6 95 86.3
SMO351G0293 Selaginella moellendorffii HOM05D006758 ORTHO05D008326 1.3e-40 169.5 90 81.1
CSS0030244 Camellia sinensis var. sinensis HOM05D006758 ORTHO05D008326 4.9e-40 167.5 81 92.6
Peaxi162Scf00082g10217 Petunia axillaris HOM05D006758 ORTHO05D008326 1.4e-39 166.0 99 82.8
Ah.09g235270 Amaranthus hybridus HOM05D006758 ORTHO05D008326 4.6e-38 161.0 81 88.9
CBR_g45280 Chara braunii HOM05D006758 ORTHO05D008326 3.0e-37 158.3 93 77.4
Sc17g0007080 Simmondsia chinensis HOM05D006758 ORTHO05D008326 4.3e-36 154.5 75 92.0
MCO09G771 Micromonas commoda HOM05D006758 ORTHO05D008326 2.8e-27 125.2 95 58.9
Hund23506 Selenicereus undatus HOM05D006758 ORTHO05D008326 8.1e-27 123.6 62 90.3
Cre16.g670200 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 5.3e-26 120.9 95 57.9
A01p30660 Brassica napus HOM05D006758 ORTHO05D008326 9.0e-18 93.6 43 93.0
vmacro15829 Vaccinium macrocarpon HOM05D006758 ORTHO05D008326 9.0e-18 93.6 44 100.0
Haze_06744 Corylus avellana HOM05D006758 ORTHO05D008326 1.2e-17 93.2 46 95.7
A01p30680 Brassica napus HOM05D006758 ORTHO05D008326 3.4e-17 91.7 43 90.7
BraA01t03197Z Brassica rapa HOM05D006758 ORTHO05D008326 3.4e-17 91.7 43 90.7
MBI02_g21861_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 4.5e-17 91.3 44 97.7
SalBow1G3298 Salvia bowleyana HOM05D006758 ORTHO05D008326 4.5e-17 91.3 45 95.6
FAN25G0357 Fragaria x ananassa HOM05D006758 ORTHO05D008326 7.6e-17 90.5 45 95.6
Cre16.g689376 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 1.7e-16 89.4 77 53.2
HPP92_000849 Vanilla planifolia HOM05D006758 ORTHO05D008326 2.2e-16 89.0 43 97.7
QL05p074940 Quercus lobata HOM05D006758 ORTHO05D008326 2.9e-16 88.6 46 91.3
QL93p0073_0472 Quercus lobata HOM05D006758 ORTHO05D008326 2.9e-16 88.6 46 91.3
FAN21G3907 Fragaria x ananassa HOM05D006758 ORTHO05D008326 6.5e-16 87.4 48 89.6
Ah.14g088140 Amaranthus hybridus HOM05D000097 ORTHO05D000041 8.4e-16 87.0 45 91.1
MBI16_g27830_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D008326 9.3e-15 83.6 51 74.5
Gohir.D06G213300 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.0e-13 80.1 40 90.0
MBI15_g03894_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 1.3e-13 79.7 51 70.6
Atru.BG.309.p Acer truncatum HOM05D006758 ORTHO05D008326 1.1e-12 76.6 39 94.9
PGSC0003DMG400002083 Solanum tuberosum HOM05D006758 ORTHO05D008326 5.3e-10 67.8 32 93.8


User provided reference genes

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