Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.8e-86 322.0 176 100.0
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.7e-44 182.6 98 100.0
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-39 166.4 99 91.9
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.7e-36 156.0 85 97.6
Rhsim11G0112500 Rhododendron simsii HOM05D000002 ORTHO05D001134 1.7e-30 136.7 77 96.1
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.4e-24 117.1 109 64.2
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 5.8e-23 111.7 104 59.6
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 5.8e-23 111.7 98 63.3
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.2e-21 105.5 98 60.2
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 7.1e-21 104.8 100 59.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.6e-20 103.6 93 60.2
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.6e-20 103.6 89 61.8
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.1e-20 103.2 105 58.1
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 3.5e-20 102.4 101 57.4
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 6.0e-20 101.7 90 62.2
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.0e-20 101.7 100 57.0
Rhsim10G0206900 Rhododendron simsii HOM05D009663 ORTHO05D007789 6.0e-20 101.7 61 90.2
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.0e-19 100.9 105 54.3
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.0e-19 100.9 104 51.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.3e-19 100.5 100 56.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.9e-19 99.0 95 58.9
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 5.1e-19 98.6 102 56.9
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 6.6e-19 98.2 91 62.6
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 6.6e-19 98.2 94 58.5
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.1e-18 97.4 86 59.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.9e-18 96.7 102 55.9
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 2.5e-18 96.3 86 60.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 2.5e-18 96.3 86 60.5
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.3e-18 95.9 102 55.9
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.3e-18 95.9 103 57.3
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 4.3e-18 95.5 86 58.1
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.3e-18 95.5 87 56.3
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 4.3e-18 95.5 86 55.8
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 4.3e-18 95.5 98 55.1
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 4.3e-18 95.5 98 55.1
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 5.6e-18 95.1 86 57.0
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.6e-18 95.1 87 56.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 5.6e-18 95.1 86 55.8
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 7.3e-18 94.7 86 57.0
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.1e-17 93.2 86 54.7
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 2.8e-17 92.8 86 53.5
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.6e-17 92.4 87 55.2
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 3.6e-17 92.4 90 56.7
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 3.6e-17 92.4 90 56.7
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.1e-16 90.9 85 55.3
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.4e-16 90.5 74 60.8
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-16 90.5 87 57.5
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-16 90.5 96 50.0
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.4e-16 89.7 92 59.8
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.1e-16 89.4 101 54.5
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.1e-16 89.4 90 53.3
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 4.0e-16 89.0 99 50.5
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.3e-16 88.6 100 49.0
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 5.3e-16 88.6 86 53.5
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 5.3e-16 88.6 93 53.8
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.9e-16 88.2 87 57.5
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.9e-16 88.2 86 50.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.9e-16 88.2 86 50.0
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.9e-16 88.2 102 53.9
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 6.9e-16 88.2 79 62.0
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.0e-16 87.8 87 56.3
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.0e-16 87.8 88 52.3
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 9.0e-16 87.8 85 52.9
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.5e-15 87.0 93 52.7
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-15 87.0 88 52.3
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.5e-15 87.0 87 56.3
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.0e-15 86.7 102 54.9
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.0e-15 86.7 93 52.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.0e-15 86.7 86 52.3
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.4e-15 85.9 101 50.5
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 4.5e-15 85.5 100 53.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 4.5e-15 85.5 85 51.8
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 5.8e-15 85.1 84 58.3
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 9.9e-15 84.3 87 55.2
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.3e-14 84.0 94 50.0
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.7e-14 83.6 88 51.1
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.2e-14 83.2 85 51.8
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.2e-14 83.2 86 47.7
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 3.8e-14 82.4 88 52.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 4.9e-14 82.0 99 47.5
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 8.4e-14 81.3 83 49.4
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.1e-13 80.9 86 52.3
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.4e-13 80.5 87 48.3
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.9e-13 80.1 92 51.1
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.9e-13 80.1 81 49.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 3.2e-13 79.3 81 50.6
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.2e-13 79.0 86 50.0
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 7.1e-13 78.2 89 51.7
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 4.6e-12 75.5 81 54.3
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 6.0e-12 75.1 91 49.5
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 7.9e-12 74.7 81 50.6
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.9e-12 74.7 91 50.5
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 7.9e-12 74.7 107 43.0
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 7.9e-12 74.7 82 51.2
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.0e-11 74.3 102 42.2
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.0e-11 74.3 98 48.0
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.0e-11 74.3 89 49.4
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 3.0e-11 72.8 71 53.5
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 3.0e-11 72.8 85 44.7
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 5.1e-11 72.0 100 42.0
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 5.1e-11 72.0 64 56.2
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.1e-10 70.9 86 48.8
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.9e-10 70.1 95 45.3
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 2.5e-10 69.7 110 40.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.3e-10 69.3 86 47.7
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 4.3e-10 68.9 66 57.6
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 4.3e-10 68.9 66 57.6
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.3e-10 68.9 86 48.8
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 9.6e-10 67.8 93 44.1
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.1e-08 64.3 94 46.8
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.4e-08 63.2 102 41.2
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 6.9e-08 61.6 117 37.6
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 6.9e-08 61.6 76 48.7
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.2e-07 60.8 94 43.6
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.2e-07 60.8 81 45.7
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.6e-07 59.7 117 36.8
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.6e-07 59.7 100 39.0
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.6e-07 59.7 77 45.5
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 3.4e-07 59.3 100 41.0
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.5e-07 58.9 101 39.6
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.5e-07 58.9 101 39.6
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 4.5e-07 58.9 100 39.0
Actinidia37590 Actinidia chinensis HOM05D000836 ORTHO05D000709 5.8e-07 58.5 67 50.7
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 5.8e-07 58.5 102 41.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.8e-07 58.5 103 40.8
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 7.6e-07 58.2 101 38.6
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 7.6e-07 58.2 101 38.6
Prupe.8G203500 Prunus persica HOM05D000836 ORTHO05D000709 7.6e-07 58.2 67 49.3
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 9.9e-07 57.8 114 38.6
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 9.9e-07 57.8 100 39.0
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 9.9e-07 57.8 100 39.0
SGA_v2.0_scaffold1G00745 Striga asiatica HOM05D000836 ORTHO05D000709 9.9e-07 57.8 94 40.4
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 1.3e-06 57.4 106 37.7
Oeu023090.1 Olea europaea HOM05D000836 ORTHO05D000709 1.3e-06 57.4 39 74.4
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.7e-06 57.0 109 35.8
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.7e-06 57.0 115 37.4
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.7e-06 57.0 112 35.7
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-06 56.6 93 38.7
Oeu009725.1 Olea europaea HOM05D000836 ORTHO05D000709 2.2e-06 56.6 67 47.8
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 2.9e-06 56.2 78 42.3
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 2.9e-06 56.2 78 42.3
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 2.9e-06 56.2 103 38.8
Manes.13G045500 Manihot esculenta HOM05D000836 ORTHO05D000709 2.9e-06 56.2 84 39.3
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 3.8e-06 55.8 100 39.0
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 3.8e-06 55.8 112 34.8
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 3.8e-06 55.8 63 49.2
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 4.9e-06 55.5 77 42.9
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 4.9e-06 55.5 77 41.6
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 4.9e-06 55.5 77 41.6
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 4.9e-06 55.5 77 41.6
vmacro14755 Vaccinium macrocarpon HOM05D000836 ORTHO05D000709 4.9e-06 55.5 84 42.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 6.4e-06 55.1 77 42.9
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 8.4e-06 54.7 112 34.8
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 8.4e-06 54.7 100 35.0
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 8.4e-06 54.7 112 34.8
FAN27G2627 Fragaria x ananassa HOM05D000836 ORTHO05D000709 8.4e-06 54.7 67 44.8


User provided reference genes

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