Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 0.0e+00 1312.7 639 100.0
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 4.4e-312 1074.7 639 85.3
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 4.6e-296 1020.8 639 81.1
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 6.5e-282 973.8 643 77.3
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 6.1e-280 967.2 649 76.0
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 2.1e-272 942.2 649 75.3
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 2.7e-264 915.2 642 72.6
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 4.1e-260 901.4 650 71.4
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 9.1e-260 900.2 651 71.6
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 2.0e-259 899.0 643 72.6
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 4.5e-259 897.9 640 70.9
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 4.5e-259 897.9 640 70.9
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 5.9e-259 897.5 640 71.1
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 1.7e-258 896.0 642 72.4
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.7e-258 896.0 643 72.5
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 2.9e-258 895.2 644 71.6
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 8.5e-258 893.6 648 71.9
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 1.1e-257 893.3 648 71.1
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 1.5e-257 892.9 644 71.3
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 1.9e-257 892.5 648 72.1
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 1.9e-257 892.5 647 71.7
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 2.5e-257 892.1 645 71.5
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 3.2e-257 891.7 645 71.6
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 5.5e-257 891.0 651 70.8
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 7.2e-257 890.6 644 72.0
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 9.4e-257 890.2 642 71.3
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 9.4e-257 890.2 645 70.7
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 1.2e-256 889.8 645 70.7
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 1.2e-256 889.8 648 71.6
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 2.7e-256 888.6 646 71.2
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 4.7e-256 887.9 643 71.1
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 8.0e-256 887.1 642 71.3
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.0e-255 886.7 644 71.0
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 1.4e-255 886.3 651 70.7
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 1.8e-255 885.9 642 71.3
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 2.3e-255 885.6 646 70.7
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 3.0e-255 885.2 648 71.5
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 4.0e-255 884.8 645 71.3
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 4.0e-255 884.8 645 70.7
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 8.8e-255 883.6 648 71.5
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 1.5e-254 882.9 646 70.6
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 2.6e-254 882.1 645 70.1
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 5.7e-254 880.9 644 70.5
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.7e-254 880.9 644 70.8
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 5.7e-254 880.9 651 71.0
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 7.5e-254 880.6 655 69.6
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 7.5e-254 880.6 647 70.6
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 9.8e-254 880.2 644 71.0
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 1.3e-253 879.8 652 69.9
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 1.4e-252 876.3 641 71.0
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 9.2e-252 873.6 655 69.0
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 1.6e-251 872.8 654 69.7
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 2.7e-251 872.1 658 69.3
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 4.5e-251 871.3 642 71.0
CSS0041721 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 5.9e-251 870.9 479 89.1
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 5.9e-251 870.9 658 69.9
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 1.7e-250 869.4 643 70.6
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 2.3e-250 869.0 646 69.0
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 3.8e-250 868.2 655 68.7
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 3.8e-250 868.2 649 69.5
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 1.5e-249 866.3 645 69.9
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 1.5e-249 866.3 658 68.1
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.9e-249 865.9 648 69.0
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 4.3e-249 864.8 655 69.6
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 9.5e-249 863.6 646 69.8
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 1.2e-248 863.2 650 69.1
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 2.1e-248 862.4 655 69.5
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 1.0e-247 860.1 647 68.9
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 3.0e-247 858.6 649 69.0
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 3.0e-247 858.6 645 69.5
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 4.0e-247 858.2 662 68.3
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 8.9e-247 857.1 653 69.5
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 8.9e-247 857.1 649 69.0
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 3.4e-246 855.1 642 68.5
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 4.4e-246 854.7 655 67.8
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 5.7e-246 854.4 648 68.8
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 5.7e-246 854.4 648 68.8
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 9.8e-246 853.6 643 68.9
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 1.7e-245 852.8 649 68.0
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 1.7e-245 852.8 648 68.4
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 2.2e-245 852.4 648 68.4
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 3.7e-245 851.7 649 69.2
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 1.2e-243 846.7 652 68.3
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 2.7e-243 845.5 645 69.0
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 3.5e-243 845.1 648 67.9
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 5.9e-243 844.3 652 68.1
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 7.8e-243 844.0 647 68.3
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 1.0e-242 843.6 643 68.9
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 8.6e-242 840.5 648 68.1
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 1.1e-241 840.1 648 67.9
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 2.5e-241 839.0 646 66.6
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 2.5e-241 839.0 646 66.6
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 2.8e-240 835.5 646 68.4
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 4.7e-240 834.7 646 67.2
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 4.7e-240 834.7 643 68.6
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 1.4e-239 833.2 642 68.1
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 9.8e-238 827.0 649 67.5
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 1.4e-236 823.2 643 67.2
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 1.2e-235 820.1 645 67.4
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 2.0e-235 819.3 648 65.9
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 8.6e-234 813.9 641 65.1
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 1.1e-233 813.5 641 64.9
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 8.1e-232 807.4 523 78.4
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 1.1e-231 807.0 644 65.5
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 3.1e-231 805.4 547 76.6
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 5.2e-231 804.7 611 66.4
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 5.2e-231 804.7 643 65.8
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.3e-229 800.0 611 66.0
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 2.1e-227 792.7 637 65.9
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.9e-225 786.2 645 63.6
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 3.6e-224 781.9 647 63.2
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 4.0e-223 778.5 523 75.5
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 6.4e-221 771.2 572 68.2
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 2.1e-219 766.1 572 67.8
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 3.9e-218 761.9 581 66.8
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 1.6e-216 756.5 606 63.0
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.7e-216 755.0 581 66.3
FAN21G0289 Fragaria x ananassa HOM05D004107 ORTHO05D004738 5.2e-215 751.5 491 77.2
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 4.4e-214 748.4 594 65.3
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.7e-213 746.5 643 62.7
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 1.4e-207 726.9 642 59.0
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 1.7e-205 719.9 643 60.0
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 1.6e-203 713.4 586 61.8
HPP92_023742 Vanilla planifolia HOM05D004107 ORTHO05D004738 2.5e-201 706.1 574 62.9
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 2.9e-197 692.6 618 59.2
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 2.3e-194 682.9 566 61.5
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 5.6e-193 678.3 544 66.2
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 1.2e-190 670.6 620 58.5
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 1.9e-188 663.3 567 59.1
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 1.4e-180 637.1 523 63.1
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 9.7e-169 597.8 653 52.5
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 3.9e-162 575.9 508 63.6
CSS0016174 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 2.0e-158 563.5 341 81.2
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 2.0e-158 563.5 583 51.5
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 2.5e-156 556.6 563 51.0
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 5.5e-156 555.4 561 53.8
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 3.0e-154 549.7 645 49.1
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.2e-139 501.1 438 59.8
CSS0046928 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 6.1e-139 498.8 308 79.5
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 3.1e-135 486.5 574 47.6
unitig_748.g7576 Utricularia gibba HOM05D004107 ORTHO05D004738 6.4e-128 462.2 313 73.5
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 5.0e-125 452.6 343 69.7
MD10G1319900 Malus domestica HOM05D004107 ORTHO05D004738 1.9e-124 450.7 309 73.5
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 9.8e-121 438.3 370 63.2
Pp3c25_3020 Physcomitrium patens HOM05D004107 ORTHO05D004738 5.6e-100 369.4 545 38.3
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.8e-91 339.7 387 46.3
vmacro09068 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 8.1e-91 339.0 322 57.8
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 1.2e-86 325.1 370 51.1
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 7.4e-84 315.8 370 50.5
BcaC03g16235 Brassica carinata HOM05D004107 ORTHO05D004738 1.9e-60 238.0 161 75.2
BraA02t07513Z Brassica rapa HOM05D004107 ORTHO05D004738 2.2e-59 234.6 160 74.4
Pp3c4_7780 Physcomitrium patens HOM05D004107 ORTHO05D004738 3.8e-56 223.8 131 77.1
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 1.2e-54 218.8 227 55.9
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 2.4e-50 204.5 227 52.4
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 3.2e-39 167.5 200 50.0
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 2.2e-32 144.8 91 79.1
CSS0008972 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 3.6e-30 137.5 72 91.7
RcHm_v2.0_Chr5g0003481 Rosa chinensis HOM05D004107 ORTHO05D004738 6.1e-30 136.7 93 73.1
vmacro09067 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 3.3e-23 114.4 72 75.0
BcaB05g23711 Brassica carinata HOM05D004107 ORTHO05D004738 2.1e-22 111.7 491 26.3
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 3.6e-22 110.9 202 37.6
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 8.0e-22 109.8 370 26.5
Atru.chr8.686 Acer truncatum HOM05D004107 ORTHO05D004738 8.9e-21 106.3 75 69.3
Psat0s2739g0040 Pisum sativum HOM05D004107 ORTHO05D004738 2.6e-20 104.8 65 70.8
BraA02t07514Z Brassica rapa HOM05D004107 ORTHO05D004738 7.5e-20 103.2 75 64.0
TAR624G0013 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.7e-19 102.1 174 37.4
RcHm_v2.0_Chr1g0332851 Rosa chinensis HOM05D004107 ORTHO05D004738 4.9e-19 100.5 56 82.1
RcHm_v2.0_Chr6g0297111 Rosa chinensis HOM05D004107 ORTHO05D004738 4.9e-19 100.5 56 82.1
SGA_v2.0_scaffold24G10311 Striga asiatica HOM05D004107 ORTHO05D004738 8.3e-19 99.8 100 55.0
Actinidia04354 Actinidia chinensis HOM05D004107 ORTHO05D004738 1.1e-18 99.4 76 64.5
CSS0026740 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 4.1e-18 97.4 72 70.8
Nitab4.5_0000960g0170 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.4e-18 97.1 145 41.4
VMungo1383G0329 Vigna mungo HOM05D004107 ORTHO05D033630 4.1e-10 70.9 87 50.6
RcHm_v2.0_Chr5g0003411 Rosa chinensis HOM05D004107 ORTHO05D004738 3.5e-09 67.8 36 86.1
Nitab4.5_0001990g0020 Nicotiana tabacum HOM05D002374 ORTHO05D004738 3.9e-08 64.3 89 41.6
Nitab4.5_0000952g0040 Nicotiana tabacum HOM05D006373 ORTHO05D008145 1.5e-07 62.4 146 31.5


User provided reference genes

Program Settings