Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0095600 Rhododendron simsii HOM05D000003 ORTHO05D338912 1.2e-291 1005.7 491 100.0
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.2e-11 74.7 69 47.8
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.7e-11 73.9 69 47.8
CSS0014386 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.4e-10 72.0 81 49.4
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.2e-10 70.9 69 46.4
Atru.chr12.2483 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-10 70.5 77 46.8
CSS0037140 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.1e-10 69.7 77 48.1
Atru.chr13.1154 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-09 68.9 89 42.7
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-09 68.2 85 37.6
TPR.G18100 Trifolium pratense HOM05D000003 ORTHO05D000004 2.1e-09 68.2 79 45.6
CSS0006955 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.7e-09 67.8 81 42.0
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.7e-09 67.8 76 43.4
Atru.chr9.1444 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-09 67.4 89 41.6
Atru.chr7.258 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-09 67.0 89 46.1
RcHm_v2.0_Chr1g0342611 Rosa chinensis HOM05D000003 ORTHO05D000004 1.0e-08 65.9 76 43.4
COL.COLO4_00878 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.3e-08 65.5 82 42.7
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 65.1 59 52.5
Atru.chr13.2218 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 65.1 71 46.5
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 1.7e-08 65.1 59 50.8
FvH4_2g04886 Fragaria vesca HOM05D000003 ORTHO05D000004 1.7e-08 65.1 110 36.4
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-08 64.3 76 44.7
Thecc.05G154500 Theobroma cacao HOM05D000003 ORTHO05D000004 3.0e-08 64.3 67 44.8
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 3.9e-08 63.9 75 45.3
Atru.chr4.30 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-08 63.5 89 42.7
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 5.1e-08 63.5 83 39.8
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 6.6e-08 63.2 59 49.2
Atru.chr2.285 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-08 63.2 59 50.8
CSS0001115 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.6e-08 62.8 61 49.2
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 62.4 89 41.6
Atru.chr2.1278 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 62.4 77 44.2
Atru.chr2.2396 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 62.4 60 46.7
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 1.1e-07 62.4 100 34.0
RcHm_v2.0_Chr3g0492921 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-07 62.4 59 52.5
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-07 62.4 59 52.5
Atru.chr9.657 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-07 62.0 78 41.0
Atru.chr5.2549 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-07 61.2 71 43.7
Atru.chr6.1554 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-07 61.2 60 46.7
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 2.5e-07 61.2 72 40.3
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-07 60.8 77 44.2
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-07 60.1 72 40.3
CSS0004389 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.6e-07 60.1 81 42.0
Atru.chr12.1754 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-07 59.7 89 40.4
Atru.chr2.1641 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-07 59.7 61 50.8
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-07 59.7 76 42.1
Cpa.g.sc36.209 Carica papaya HOM05D000003 ORTHO05D000004 9.5e-07 59.3 59 49.2
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 58.9 76 43.4
Atru.chr13.1100 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 58.9 72 44.4
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 58.9 59 44.1
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-06 58.9 59 45.8
Atru.chr7.171 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 58.9 76 40.8
CSS0032111 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.2e-06 58.9 61 47.5
Psat5g134200 Pisum sativum HOM05D000003 ORTHO05D000004 1.2e-06 58.9 187 28.3
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 58.5 59 47.5
Atru.chr12.1990 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 58.5 59 49.2
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 58.5 77 42.9
Atru.chr7.952 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 58.5 59 47.5
Atru.ctg664.6 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-06 58.5 101 35.6
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-06 58.2 59 49.2
COL.COLO4_17415 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.1e-06 58.2 69 37.7
Atru.chr7.950 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-06 57.8 76 42.1
Atru.chr1.2517 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 57.4 58 48.3
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 57.4 85 35.3
Atru.chr10.897 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 57.4 65 47.7
COL.COLO4_36959 Corchorus olitorius HOM05D000003 ORTHO05D000004 3.6e-06 57.4 58 50.0
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-06 56.6 65 46.2
Atru.chr2.451 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-06 56.6 78 39.7
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-06 56.6 66 42.4
Cpa.g.sc791.1 Carica papaya HOM05D000003 ORTHO05D000004 6.2e-06 56.6 56 46.4
Atru.chr4.661 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-06 56.2 57 47.4
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-06 56.2 59 44.1
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 8.1e-06 56.2 71 38.0


User provided reference genes

Program Settings