Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.6e-132 475.3 233 100.0
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.3e-99 365.9 222 84.7
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 6.6e-91 337.8 237 74.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.2e-81 304.7 219 71.2
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 5.2e-80 301.6 228 69.7
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.5e-74 282.7 231 63.2
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 2.1e-73 279.6 234 62.0
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 8.9e-72 274.2 239 60.7
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 3.4e-71 272.3 234 60.7
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 2.9e-70 269.2 186 70.4
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 4.9e-70 268.5 233 61.4
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 8.4e-70 267.7 194 66.5
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.1e-69 267.3 233 60.9
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.4e-69 266.9 230 62.6
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.9e-69 266.5 230 63.0
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.4e-69 266.2 233 59.7
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.2e-68 263.8 233 60.1
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 1.2e-68 263.8 234 60.7
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.7e-68 262.7 231 61.0
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 3.5e-68 262.3 237 58.6
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 3.5e-68 262.3 233 59.7
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 3.5e-68 262.3 233 59.7
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 3.5e-68 262.3 234 59.0
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 4.6e-68 261.9 230 63.0
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 6.0e-68 261.5 231 62.8
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 7.8e-68 261.2 230 63.0
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.3e-67 260.4 231 60.2
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.3e-67 260.4 188 69.1
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 3.9e-67 258.8 235 58.7
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 5.1e-67 258.5 233 57.5
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 6.6e-67 258.1 231 58.9
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 8.7e-67 257.7 193 65.3
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.5e-66 256.9 212 59.9
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 1.3e-65 253.8 230 60.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.3e-65 253.8 212 62.3
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.8e-65 251.9 179 68.7
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 4.8e-65 251.9 211 60.7
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.1e-64 250.8 202 62.4
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.4e-64 250.4 240 59.2
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 4.0e-64 248.8 167 72.5
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 5.3e-64 248.4 232 56.0
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 6.9e-64 248.1 223 59.2
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 6.9e-64 248.1 186 65.1
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 9.0e-64 247.7 186 68.3
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 2.6e-63 246.1 234 57.7
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.5e-63 245.4 204 62.3
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 5.8e-63 245.0 246 55.3
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.3e-62 243.8 202 60.9
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.3e-62 243.8 204 62.7
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 1.7e-62 243.4 230 57.8
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.7e-62 243.4 241 53.9
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 3.8e-62 242.3 182 64.8
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 3.8e-62 242.3 179 68.7
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 1.1e-61 240.7 167 71.3
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.4e-61 240.4 234 56.0
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 2.4e-61 239.6 205 60.5
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 3.2e-61 239.2 195 62.6
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 3.2e-61 239.2 204 61.3
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.2e-61 238.8 230 54.8
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 4.2e-61 238.8 210 60.0
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 4.2e-61 238.8 235 57.0
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 5.4e-61 238.4 187 64.2
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 7.1e-61 238.0 203 60.6
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 9.3e-61 237.7 211 57.3
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.1e-60 236.5 224 57.6
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.7e-60 236.1 236 55.1
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 7.9e-60 234.6 218 56.4
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 7.9e-60 234.6 218 56.4
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 7.9e-60 234.6 202 58.9
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 7.9e-60 234.6 236 55.9
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 1.3e-59 233.8 195 62.6
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.3e-59 233.0 170 67.6
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.9e-59 232.3 234 55.1
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 3.9e-59 232.3 226 53.5
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 5.1e-59 231.9 230 53.9
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 5.1e-59 231.9 187 63.6
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.1e-58 230.7 200 57.0
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.1e-58 230.7 234 55.1
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.3e-58 229.2 202 59.4
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 5.6e-58 228.4 192 61.5
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 5.6e-58 228.4 170 67.1
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 6.2e-57 224.9 198 61.1
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 8.1e-57 224.6 165 65.5
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.8e-56 223.4 201 57.2
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.6e-55 219.5 203 59.1
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 1.7e-54 216.9 193 58.5
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 2.9e-54 216.1 171 59.1
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 8.4e-54 214.5 234 50.4
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 8.4e-54 214.5 234 50.4
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.2e-52 210.7 145 71.7
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 1.3e-51 207.2 180 59.4
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 5.1e-51 205.3 146 71.2
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.5e-50 203.8 170 60.6
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 2.5e-50 203.0 226 52.2
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 7.4e-50 201.4 167 61.1
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 8.2e-49 198.0 145 67.6
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 2.6e-47 193.0 169 58.6
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.7e-46 190.3 145 64.8
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 2.2e-46 189.9 234 48.7
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 4.9e-46 188.7 222 49.1
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 9.3e-45 184.5 168 56.5
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 1.6e-44 183.7 163 52.1
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 6.7e-43 178.3 169 55.0
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 2.5e-42 176.4 129 68.2
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.5e-42 176.4 160 53.1
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 6.3e-41 171.8 160 53.8
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 8.2e-41 171.4 218 46.8
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.2e-39 167.5 165 52.1
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.5e-39 167.2 185 49.2
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.5e-39 167.2 178 50.0
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 3.4e-39 166.0 127 65.4
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 3.8e-38 162.5 154 51.9
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 6.5e-38 161.8 122 67.2
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 8.5e-38 161.4 131 57.3
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 7.2e-37 158.3 123 66.7
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 9.3e-37 157.9 116 66.4
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 4.6e-36 155.6 129 58.1
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 4.6e-36 155.6 120 65.0
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 3.0e-35 152.9 201 42.3
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 8.7e-35 151.4 145 55.2
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.7e-35 151.4 145 55.2
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 4.8e-33 145.6 127 52.8
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 3.2e-29 132.9 107 58.9
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 9.4e-29 131.3 107 57.9
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 2.1e-28 130.2 107 57.9
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 3.0e-27 126.3 120 50.0
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 4.1e-24 115.9 138 44.9
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.5e-23 114.0 83 65.1
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 4.5e-23 112.5 131 40.5
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 8.5e-22 108.2 96 58.3
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 2.5e-21 106.7 83 65.1
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.1e-20 103.6 90 54.4
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 5.2e-19 99.0 100 52.0
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.7e-17 94.0 69 63.8
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 1.8e-16 90.5 70 60.0
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 5.3e-16 89.0 74 56.8
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 4.5e-15 85.9 97 46.4
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 5.9e-15 85.5 79 57.0
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.7e-14 84.0 64 62.5
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 2.2e-14 83.6 100 48.0
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 1.2e-10 71.2 53 58.5
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 1.5e-10 70.9 87 44.8
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 2.0e-07 60.5 97 38.1


User provided reference genes

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