Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 5.4e-202 707.6 400 100.0
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 9.8e-143 510.8 383 81.2
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-108 395.6 402 61.7
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.4e-103 379.0 405 59.0
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 9.9e-103 377.9 401 58.6
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.8e-95 352.1 394 58.4
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 3.6e-89 332.8 408 56.6
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 8.1e-89 331.6 412 52.4
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 2.4e-85 320.1 332 57.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.2e-85 319.3 412 51.5
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 7.1e-85 318.5 347 59.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.9e-82 310.5 399 50.4
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.5e-82 310.1 401 50.4
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 4.0e-80 302.8 340 55.9
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.5e-79 300.8 408 52.7
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.6e-79 300.1 405 51.4
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 3.4e-79 299.7 404 51.2
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 7.6e-79 298.5 404 49.8
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 7.6e-79 298.5 402 51.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 9.9e-79 298.1 403 51.1
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.1e-77 294.7 412 50.2
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.9e-77 293.9 378 50.5
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 5.5e-77 292.4 406 48.0
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.1e-76 290.4 363 52.3
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.6e-76 289.3 416 47.4
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.0e-75 288.1 396 54.0
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.8e-75 287.3 411 50.1
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 3.0e-75 286.6 409 48.2
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.1e-74 284.6 397 48.1
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 7.4e-74 282.0 413 48.4
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 9.6e-74 281.6 405 50.1
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.3e-73 281.2 410 48.0
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.1e-73 280.4 402 49.5
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 4.8e-73 279.3 410 48.8
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.8e-72 277.3 409 47.9
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 5.3e-72 275.8 408 50.0
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 6.9e-72 275.4 402 49.8
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.5e-71 274.2 397 47.6
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 2.6e-71 273.5 398 50.0
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 4.5e-71 272.7 408 50.0
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.0e-70 271.6 411 47.2
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.3e-70 271.2 420 49.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.7e-70 270.8 408 45.3
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.7e-70 270.8 400 48.0
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.7e-70 270.8 334 52.1
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.7e-70 270.8 407 49.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 6.5e-70 268.9 408 47.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.9e-69 267.3 345 53.0
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 5.5e-69 265.8 400 49.8
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.6e-68 264.2 406 50.5
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 4.6e-68 262.7 430 46.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 6.0e-68 262.3 314 53.5
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.8e-67 260.8 406 50.0
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.3e-67 260.4 397 47.9
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.9e-67 259.6 357 49.6
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.1e-67 259.2 323 55.7
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 6.7e-67 258.8 406 48.5
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 6.7e-67 258.8 333 48.6
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.9e-66 257.3 430 46.0
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.8e-65 253.4 331 53.2
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 5.3e-64 249.2 378 45.5
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 9.0e-64 248.4 405 44.2
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.4e-63 246.5 401 47.6
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.3e-62 244.6 411 46.0
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 3.8e-62 243.0 422 46.2
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.1e-61 241.5 379 48.8
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.9e-61 240.7 386 46.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 5.5e-61 239.2 326 51.2
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.7e-60 236.9 349 45.6
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.6e-60 236.1 375 45.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.6e-60 236.1 346 46.2
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.0e-59 235.0 389 45.5
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.3e-59 234.6 375 45.6
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.3e-59 234.6 413 44.1
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.3e-59 233.8 411 44.5
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.3e-59 233.8 346 46.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 3.9e-59 233.0 411 44.5
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.1e-59 232.6 372 45.7
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.3e-57 228.0 407 42.3
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.1e-56 224.9 392 44.1
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.8e-56 224.2 401 43.9
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.2e-55 221.5 392 43.1
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.6e-55 220.3 402 43.8
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.0e-54 218.4 404 41.3
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.2e-54 217.2 333 45.6
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.2e-54 217.2 392 42.1
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.8e-54 216.5 407 45.2
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.9e-51 206.5 411 43.1
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 6.7e-51 205.7 342 45.0
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 3.7e-49 199.9 395 44.3
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.4e-48 197.2 411 41.1
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.5e-47 194.5 406 43.3
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 7.7e-47 192.2 167 60.5
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.9e-46 190.3 339 43.7
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 9.4e-45 185.3 426 38.5
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.4e-43 181.4 300 45.0
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.4e-43 181.4 401 42.6
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 3.0e-43 180.3 342 43.9
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 8.8e-43 178.7 327 39.4
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.1e-42 178.3 399 40.4
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.5e-42 177.9 276 49.3
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.5e-42 177.9 276 49.3
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.0e-42 177.6 398 36.9
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.4e-42 176.4 125 72.8
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 9.7e-42 175.3 391 40.2
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 9.7e-42 175.3 395 40.3
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.3e-41 174.9 393 40.2
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.8e-41 173.7 398 36.4
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.7e-41 173.3 344 43.0
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.1e-40 171.8 338 44.1
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.4e-40 170.6 410 35.1
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-40 170.2 205 58.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-40 170.2 205 58.0
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 5.3e-40 169.5 282 47.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 5.3e-40 169.5 396 39.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 5.3e-40 169.5 396 39.4
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 9.1e-40 168.7 306 47.1
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.6e-39 167.2 391 39.9
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 3.5e-39 166.8 393 39.2
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 7.7e-39 165.6 338 42.3
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.3e-38 164.9 421 34.4
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.9e-38 163.7 396 35.6
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.5e-38 162.2 194 56.7
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.6e-36 157.9 267 47.2
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 4.0e-35 153.3 316 39.6
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 2.8e-33 147.1 215 46.0
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 3.7e-33 146.7 427 34.0
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 4.8e-33 146.4 267 46.4
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 3.5e-31 140.2 168 52.4
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 4.5e-31 139.8 404 33.2
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 8.5e-30 135.6 402 34.3
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-27 127.9 197 49.2
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-27 127.5 208 49.0
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-27 126.3 208 48.6
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-26 124.4 208 48.1
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.7e-26 122.9 208 47.6
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-25 121.7 208 47.6
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.8e-25 120.6 99 69.7
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 7.2e-21 105.9 191 45.5
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.0e-19 100.5 208 44.2
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.2e-17 94.4 249 39.0
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 2.8e-17 94.0 106 50.9
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 2.0e-15 87.8 214 36.0
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.7e-15 87.4 391 30.2
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 4.7e-12 76.6 103 52.4
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.5e-10 71.6 256 32.4
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 5.7e-10 69.7 57 68.4
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 2.4e-08 64.3 87 43.7


User provided reference genes

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