Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 2263.4 1158 100.0
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1701.4 1150 76.5
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1414.8 1158 64.2
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1345.5 1150 61.7
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1336.6 1151 61.7
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1335.5 1153 59.3
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1325.8 1153 59.2
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1309.3 1178 57.9
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1304.7 1153 58.2
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1303.9 1153 58.3
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1303.5 1153 59.2
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1274.6 1252 54.8
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1274.2 1153 57.4
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1271.1 1153 57.4
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1259.2 1183 57.2
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 0.0e+00 1258.4 1152 57.7
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1236.9 1133 57.6
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1231.9 1146 56.5
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1228.8 1154 55.8
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1223.4 1156 55.4
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1223.0 1156 56.6
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1219.9 1162 57.1
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1218.0 1163 56.6
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1208.4 1148 55.7
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1204.9 1153 55.4
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1203.7 1154 55.7
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1199.1 1158 55.4
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1198.0 1143 55.1
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1197.2 1155 55.2
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1195.6 1155 54.8
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1194.5 1117 56.0
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1192.6 1113 56.6
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 0.0e+00 1189.9 1119 55.2
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1189.5 1153 56.5
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1186.8 1057 58.8
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1165.6 1022 58.5
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1159.8 1148 53.5
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1154.0 1159 53.1
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 0.0e+00 1153.3 1038 58.8
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1145.2 1157 53.6
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1144.4 1146 54.3
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1139.4 1162 52.9
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1135.2 1190 52.9
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1135.2 1182 53.6
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1134.8 1159 52.8
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1134.4 1146 53.9
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1132.9 1157 52.0
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1129.4 1153 54.6
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1127.9 1151 52.5
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1120.9 1159 52.1
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1120.9 1146 53.8
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1120.9 1156 52.2
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1117.4 1153 52.5
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1116.7 1157 52.5
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1116.3 1156 52.2
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1114.0 1156 52.2
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 0.0e+00 1110.1 1125 52.9
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1108.2 1154 52.2
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1104.0 1152 51.1
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1095.9 1153 50.6
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1085.5 1150 50.2
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 5.5e-311 1071.2 1147 50.1
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 5.2e-306 1054.7 756 72.1
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 5.8e-305 1051.2 1152 51.0
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 9.9e-305 1050.4 1148 48.7
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 5.4e-303 1044.6 1152 49.0
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 6.0e-302 1041.2 1149 48.8
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 2.5e-300 1035.8 1164 48.6
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 4.3e-300 1035.0 1151 48.5
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 9.6e-300 1033.9 1150 47.7
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 4.9e-296 1021.5 1151 49.7
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 4.9e-296 1021.5 1176 48.8
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 7.1e-295 1017.7 1154 49.2
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 6.7e-293 1011.1 1149 49.1
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 6.9e-290 1001.1 1150 47.3
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 6.9e-290 1001.1 1153 47.4
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 6.9e-290 1001.1 1153 47.3
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 6.9e-290 1001.1 1153 47.4
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 1.6e-286 989.9 1154 47.1
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 7.9e-286 987.6 988 53.2
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 2.2e-280 969.5 1152 46.3
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 7.1e-279 964.5 714 73.8
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.3e-277 959.5 1092 47.7
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.2e-275 953.0 868 59.9
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 1.2e-273 947.2 1110 47.4
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.7e-267 926.8 859 56.3
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 3.4e-265 919.1 1150 44.4
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 4.2e-263 912.1 767 61.1
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 5.7e-260 901.7 1126 45.2
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 4.2e-255 885.6 1051 47.4
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 3.5e-241 839.3 773 58.5
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 7.7e-241 838.2 1153 42.5
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 5.9e-225 785.4 838 49.9
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 3.6e-214 749.6 795 50.2
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 1.3e-208 731.1 1006 41.3
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.7e-187 661.0 1131 37.2
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 1.5e-180 637.9 898 41.5
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 3.2e-162 577.0 584 52.1
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 7.2e-146 522.7 332 79.2
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 4.1e-141 506.9 523 52.0
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 3.6e-137 493.8 543 50.5
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.8e-134 484.2 649 42.7
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 6.3e-126 456.4 344 66.3
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 2.1e-97 361.7 605 40.5
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 2.3e-96 358.2 358 52.5
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.5e-90 339.0 1123 27.6
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 6.2e-89 333.6 268 63.1
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 7.3e-82 310.1 339 51.3
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 6.2e-81 307.0 1147 25.2
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 1.5e-79 302.4 395 43.8
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.7e-78 298.9 380 42.9
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.9e-77 295.4 390 43.1
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.4e-72 278.5 339 45.7
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 3.3e-66 258.1 185 74.1
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 5.1e-59 234.2 281 47.7
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 8.7e-51 206.8 138 77.5
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 6.1e-36 157.5 189 46.6
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.2e-28 133.3 116 61.2
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 4.4e-26 124.8 129 52.7
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 1.1e-24 120.2 215 34.9
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 6.1e-20 104.4 435 22.8
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 1.0e-19 103.6 117 51.3
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 1.1e-18 100.1 92 54.3
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 1.3e-17 96.7 120 46.7
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 3.1e-16 92.0 148 38.5
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 2.7e-12 79.0 65 56.9
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 1.8e-11 76.3 70 64.3


User provided reference genes

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