Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0080900 Rhododendron simsii HOM05D001995 ORTHO05D001952 3.4e-71 271.6 137 100.0
Rhsim04G0229000 Rhododendron simsii HOM05D001995 ORTHO05D001952 3.4e-47 191.8 115 90.4
Rhsim12G0204400 Rhododendron simsii HOM05D001995 ORTHO05D001952 1.1e-42 176.8 105 87.6
vmacro17005 Vaccinium macrocarpon HOM05D001995 ORTHO05D001952 3.3e-34 148.7 102 74.5
Actinidia39127 Actinidia chinensis HOM05D001995 ORTHO05D001952 1.8e-19 99.8 103 58.3
CSS0007012 Camellia sinensis var. sinensis HOM05D001995 ORTHO05D001952 5.7e-18 94.7 112 51.8
Actinidia09014 Actinidia chinensis HOM05D001995 ORTHO05D001952 3.7e-17 92.0 109 53.2
QL02p001764 Quercus lobata HOM05D001995 ORTHO05D001952 8.3e-17 90.9 121 49.6
TAR383G0578 Trochodendron aralioides HOM05D001995 ORTHO05D001952 6.5e-14 81.3 94 50.0
CiPaw.01G228300 Carya illinoinensis HOM05D001995 ORTHO05D001952 8.5e-14 80.9 103 49.5
Nn8g38970 Nelumbo nucifera HOM05D001995 ORTHO05D001952 8.5e-14 80.9 93 51.6
MD08G1074100 Malus domestica HOM05D001995 ORTHO05D001952 5.5e-13 78.2 93 50.5
Thecc.09G050200 Theobroma cacao HOM05D001995 ORTHO05D001952 5.5e-13 78.2 95 45.3
Atru.chr7.2031 Acer truncatum HOM05D001995 ORTHO05D001952 9.4e-13 77.4 98 44.9
Haze_18227 Corylus avellana HOM05D001995 ORTHO05D001952 1.2e-12 77.0 106 47.2
Prupe.3G054300 Prunus persica HOM05D001995 ORTHO05D001952 1.2e-12 77.0 104 49.0
GSVIVG01035337001 Vitis vinifera HOM05D001995 ORTHO05D001952 1.2e-12 77.0 94 45.7
Sed0020859 Sechium edule HOM05D001995 ORTHO05D001952 3.6e-12 75.5 89 50.6
MELO3C010769.2 Cucumis melo HOM05D001995 ORTHO05D001952 4.7e-12 75.1 89 50.6
CsaV3_2G025750 Cucumis sativus L. HOM05D001995 ORTHO05D001952 4.7e-12 75.1 89 50.6
Thecc.06G104900 Theobroma cacao HOM05D001995 ORTHO05D001952 4.7e-12 75.1 88 51.1
Dinv30408 Davidia involucrata HOM05D001995 ORTHO05D001952 6.1e-12 74.7 97 50.5
Aqoxy7G03945 Aquilegia oxysepala HOM05D001995 ORTHO05D001952 1.0e-11 73.9 82 51.2
Dinv38742 Davidia involucrata HOM05D001995 ORTHO05D001952 1.0e-11 73.9 96 50.0
Duzib187G1876 Durio zibethinus HOM05D001995 ORTHO05D001952 1.4e-11 73.6 81 50.6
COL.COLO4_21018 Corchorus olitorius HOM05D001995 ORTHO05D001952 1.8e-11 73.2 102 44.1
COL.COLO4_30566 Corchorus olitorius HOM05D001995 ORTHO05D001952 1.8e-11 73.2 104 44.2
Potri.006G233800 Populus trichocarpa HOM05D001995 ORTHO05D001952 1.8e-11 73.2 83 51.8
Atru.chr1.3602 Acer truncatum HOM05D001995 ORTHO05D001952 2.3e-11 72.8 104 44.2
Prupe.1G416000 Prunus persica HOM05D001995 ORTHO05D001952 3.0e-11 72.4 96 45.8
BraA09t40944Z Brassica rapa HOM05D001995 ORTHO05D001952 4.0e-11 72.0 89 49.4
TAR626G1173 Trochodendron aralioides HOM05D001995 ORTHO05D001952 5.2e-11 71.6 94 47.9
A09p55420 Brassica napus HOM05D001995 ORTHO05D001952 6.8e-11 71.2 89 48.3
Cc08_g10110 Coffea canephora HOM05D001995 ORTHO05D001952 6.8e-11 71.2 98 45.9
Duzib235G0132 Durio zibethinus HOM05D001995 ORTHO05D001952 6.8e-11 71.2 101 43.6
Gohir.A07G022156 Gossypium hirsutum HOM05D001995 ORTHO05D001952 6.8e-11 71.2 95 44.2
Manes.04G136600 Manihot esculenta HOM05D001995 ORTHO05D001952 6.8e-11 71.2 105 40.0
Gohir.D07G023200 Gossypium hirsutum HOM05D001995 ORTHO05D001952 8.8e-11 70.9 95 45.3
Gohir.D07G023300 Gossypium hirsutum HOM05D001995 ORTHO05D001952 8.8e-11 70.9 95 44.2
Gorai.001G024000 Gossypium raimondii HOM05D001995 ORTHO05D001952 8.8e-11 70.9 95 45.3
Lalb_Chr23g0267721 Lupinus albus HOM05D001995 ORTHO05D001952 8.8e-11 70.9 96 46.9
PSO210G0260 Papaver somniferum HOM05D001995 ORTHO05D001952 8.8e-11 70.9 97 45.4
Gohir.D05G134900 Gossypium hirsutum HOM05D001995 ORTHO05D001952 1.2e-10 70.5 95 45.3
Gorai.009G138600 Gossypium raimondii HOM05D001995 ORTHO05D001952 1.2e-10 70.5 95 45.3
PSO210G6919 Papaver somniferum HOM05D001995 ORTHO05D001952 1.2e-10 70.5 97 45.4
Sabra06G0182100 Salix brachista HOM05D001995 ORTHO05D001952 1.2e-10 70.5 83 50.6
BcaC07g40843 Brassica carinata HOM05D001995 ORTHO05D001952 1.5e-10 70.1 89 48.3
Duzib235G1352 Durio zibethinus HOM05D001995 ORTHO05D001952 1.5e-10 70.1 96 44.8
Gohir.A07G022152 Gossypium hirsutum HOM05D001995 ORTHO05D001952 1.5e-10 70.1 95 44.2
Manes.16G077200 Manihot esculenta HOM05D001995 ORTHO05D001952 1.5e-10 70.1 83 53.0
Sp4g05820 Schrenkiella parvula HOM05D001995 ORTHO05D001952 1.5e-10 70.1 100 47.0
SpUn0059_0010 Schrenkiella parvula HOM05D001995 ORTHO05D001952 1.5e-10 70.1 100 47.0
MSTRG.25934 Avicennia marina HOM05D001995 ORTHO05D001952 2.0e-10 69.7 83 51.8
Lj8A559T41 Lonicera japonica HOM05D001995 ORTHO05D001952 2.0e-10 69.7 96 42.7
MD15G1062000 Malus domestica HOM05D001995 ORTHO05D001952 2.0e-10 69.7 82 47.6
C08p38400 Brassica napus HOM05D001995 ORTHO05D001952 3.4e-10 68.9 89 47.2
BolC8t51413H Brassica oleracea HOM05D001995 ORTHO05D001952 3.4e-10 68.9 89 47.2
CARHR286480 Cardamine hirsuta HOM05D001995 ORTHO05D001952 3.4e-10 68.9 89 49.4
Cfa017922 Carpinus fangiana HOM05D001995 ORTHO05D001952 3.4e-10 68.9 82 51.2
CiPaw.16G030600 Carya illinoinensis HOM05D001995 ORTHO05D001952 3.4e-10 68.9 97 46.4
Ciclev10007592m.g Citrus clementina HOM05D001995 ORTHO05D001952 3.4e-10 68.9 100 44.0
Gorai.001G024100 Gossypium raimondii HOM05D001995 ORTHO05D001952 3.4e-10 68.9 95 44.2
Cpa.g.sc78.11 Carica papaya HOM05D001995 ORTHO05D001952 4.4e-10 68.6 96 44.8
Migut.A00160 Erythranthe guttata HOM05D001995 ORTHO05D001952 4.4e-10 68.6 110 42.7
Eucgr.C02997 Eucalyptus grandis HOM05D001995 ORTHO05D001952 4.4e-10 68.6 82 50.0
AT2G25930 Arabidopsis thaliana HOM05D001995 ORTHO05D001952 5.7e-10 68.2 87 52.9
AL4G18010 Arabidopsis lyrata HOM05D001995 ORTHO05D001952 7.5e-10 67.8 87 52.9
arahy.Tifrunner.gnm1.ann1.14SSB6 Arachis hypogaea HOM05D001995 ORTHO05D001952 7.5e-10 67.8 82 47.6
arahy.Tifrunner.gnm1.ann1.MX5F6R Arachis hypogaea HOM05D001995 ORTHO05D001952 7.5e-10 67.8 82 47.6
TWI63G1309 Tripterygium wilfordii HOM05D001995 ORTHO05D001952 7.5e-10 67.8 84 47.6
CiPaw.15G042600 Carya illinoinensis HOM05D001995 ORTHO05D001952 9.8e-10 67.4 83 51.8
MBI04_g12187_MAGBIO Magnolia biondii HOM05D001995 ORTHO05D001952 9.8e-10 67.4 95 50.5
QL05p017252 Quercus lobata HOM05D001995 ORTHO05D001952 9.8e-10 67.4 105 43.8
arahy.Tifrunner.gnm1.ann1.K5TY51 Arachis hypogaea HOM05D001995 ORTHO05D001952 1.3e-09 67.0 96 44.8
arahy.Tifrunner.gnm1.ann1.RZ10DS Arachis hypogaea HOM05D001995 ORTHO05D001952 1.3e-09 67.0 96 44.8
Oeu011788.1 Olea europaea HOM05D001995 ORTHO05D001952 1.3e-09 67.0 89 50.6
Thhalv10001926m.g Eutrema salsugineum HOM05D001995 ORTHO05D001952 1.7e-09 66.6 87 50.6
Nitab4.5_0000300g0090 Nicotiana tabacum HOM05D001995 ORTHO05D001952 1.7e-09 66.6 98 43.9
Dinv23417 Davidia involucrata HOM05D001995 ORTHO05D001952 2.2e-09 66.2 82 48.8
RcHm_v2.0_Chr6g0310391 Rosa chinensis HOM05D001995 ORTHO05D001952 2.2e-09 66.2 95 45.3
QL05p017552 Quercus lobata HOM05D001995 ORTHO05D001952 2.8e-09 65.9 105 42.9
VMungo1309G2835 Vigna mungo HOM05D001995 ORTHO05D001952 2.8e-09 65.9 97 44.3
Carub.0004s0579 Capsella rubella HOM05D001995 ORTHO05D001952 3.7e-09 65.5 87 50.6
THA.LOC104803738 Tarenaya hassleriana HOM05D001995 ORTHO05D001952 3.7e-09 65.5 83 53.0
Aa31LG5G9760 Aethionema arabicum HOM05D001995 ORTHO05D001952 4.8e-09 65.1 101 43.6
Ca_15878_v3 Cicer arietinum L. HOM05D001995 ORTHO05D001952 4.8e-09 65.1 82 48.8
FvH4_2g32300 Fragaria vesca HOM05D001995 ORTHO05D001952 4.8e-09 65.1 95 44.2
FAN15G1306 Fragaria x ananassa HOM05D001995 ORTHO05D001952 4.8e-09 65.1 89 48.3
Phvul.001G032900 Phaseolus vulgaris HOM05D001995 ORTHO05D001952 4.8e-09 65.1 86 48.8
Gohir.A09G080800 Gossypium hirsutum HOM05D001995 ORTHO05D001952 6.3e-09 64.7 89 46.1
Duzib192G1016 Durio zibethinus HOM05D001995 ORTHO05D001952 8.3e-09 64.3 81 48.1
MBI01_g16594_MAGBIO Magnolia biondii HOM05D001995 ORTHO05D001952 8.3e-09 64.3 106 42.5
TPR.G25357 Trifolium pratense HOM05D001995 ORTHO05D001952 8.3e-09 64.3 82 50.0
Glyma.04G050200 Glycine max HOM05D001995 ORTHO05D001952 1.1e-08 63.9 82 47.6
Medtr3g103970 Medicago truncatula HOM05D001995 ORTHO05D001952 1.1e-08 63.9 102 41.2
PGR044G1907 Punica granatum HOM05D001995 ORTHO05D001952 1.4e-08 63.5 96 42.7
Lj1g0009532 Lotus japonicus HOM05D001995 ORTHO05D001952 1.8e-08 63.2 101 39.6
Psat5g037560 Pisum sativum HOM05D001995 ORTHO05D001952 1.8e-08 63.2 98 42.9
Rhsim07G0144300 Rhododendron simsii HOM05D001995 ORTHO05D001952 1.8e-08 63.2 85 45.9
CSS0012774 Camellia sinensis var. sinensis HOM05D001995 ORTHO05D001952 2.4e-08 62.8 82 46.3
Haze_15898 Corylus avellana HOM05D001995 ORTHO05D001952 2.4e-08 62.8 108 39.8
FAN27G1765 Fragaria x ananassa HOM05D001995 ORTHO05D001952 2.4e-08 62.8 88 47.7
Sabra03G0021700 Salix brachista HOM05D001995 ORTHO05D001952 2.4e-08 62.8 61 52.5
vmacro05274 Vaccinium macrocarpon HOM05D001995 ORTHO05D001952 2.4e-08 62.8 83 47.0
Actinidia18201 Actinidia chinensis HOM05D001995 ORTHO05D001952 3.1e-08 62.4 83 44.6
BcaB06g29615 Brassica carinata HOM05D001995 ORTHO05D001952 3.1e-08 62.4 86 45.3
CSS0015533 Camellia sinensis var. sinensis HOM05D001995 ORTHO05D001952 3.1e-08 62.4 82 46.3
Medtr8g015480 Medicago truncatula HOM05D001995 ORTHO05D001952 3.1e-08 62.4 99 40.4
Oeu029400.1 Olea europaea HOM05D001995 ORTHO05D001952 3.1e-08 62.4 82 42.7
Oeu057702.1 Olea europaea HOM05D001995 ORTHO05D001952 3.1e-08 62.4 84 45.2
TWI34G0767 Tripterygium wilfordii HOM05D001995 ORTHO05D001952 4.1e-08 62.0 81 46.9
MSTRG.1673 Avicennia marina HOM05D001995 ORTHO05D001952 5.4e-08 61.6 86 45.3
Aqoxy408s003 Aquilegia oxysepala HOM05D001995 ORTHO05D001952 7.0e-08 61.2 70 50.0
HanXRQChr02g0047961 Helianthus annuus HOM05D001995 ORTHO05D001952 7.0e-08 61.2 95 43.2
VMungo0647G1425 Vigna mungo HOM05D001995 ORTHO05D001952 7.0e-08 61.2 86 47.7
FAN20G2425 Fragaria x ananassa HOM05D001995 ORTHO05D001952 1.2e-07 60.5 89 48.3
TWI32G0713 Tripterygium wilfordii HOM05D001995 ORTHO05D001952 1.2e-07 60.5 80 46.2
vmacro00174 Vaccinium macrocarpon HOM05D001995 ORTHO05D001952 1.2e-07 60.5 80 47.5
AUR62040202 Chenopodium quinoa HOM05D001995 ORTHO05D001952 1.6e-07 60.1 91 45.1
AUR62043053 Chenopodium quinoa HOM05D001995 ORTHO05D001952 1.6e-07 60.1 91 45.1
Nitab4.5_0002656g0030 Nicotiana tabacum HOM05D001995 ORTHO05D001952 1.6e-07 60.1 98 42.9
Nitab4.5_0010821g0010 Nicotiana tabacum HOM05D001995 ORTHO05D001952 2.0e-07 59.7 96 42.7
AUR62009205 Chenopodium quinoa HOM05D001995 ORTHO05D001952 2.7e-07 59.3 91 45.1
Migut.E01551 Erythranthe guttata HOM05D001995 ORTHO05D001952 2.7e-07 59.3 85 44.7
EL10Ac2g03948 Beta vulgaris HOM05D001995 ORTHO05D001952 3.5e-07 58.9 93 45.2
Dinv27956 Davidia involucrata HOM05D001995 ORTHO05D001952 3.5e-07 58.9 51 62.7
Glyma.14G091900 Glycine max HOM05D001995 ORTHO05D001952 3.5e-07 58.9 84 47.6
Peaxi162Scf00207g01153 Petunia axillaris HOM05D001995 ORTHO05D001952 3.5e-07 58.9 106 35.8
THA.LOC104803800 Tarenaya hassleriana HOM05D001995 ORTHO05D001952 3.5e-07 58.9 86 45.3
DCAR_000777 Daucus carota HOM05D001995 ORTHO05D001952 4.5e-07 58.5 97 42.3
FAN05G1975 Fragaria x ananassa HOM05D001995 ORTHO05D001952 4.5e-07 58.5 96 37.5
Nitab4.5_0000359g0210 Nicotiana tabacum HOM05D001995 ORTHO05D001952 4.5e-07 58.5 98 40.8
Potri.003G045000 Populus trichocarpa HOM05D001995 ORTHO05D001952 4.5e-07 58.5 52 57.7
Dinv10639 Davidia involucrata HOM05D001995 ORTHO05D001952 5.9e-07 58.2 85 44.7
FvH4_6g32780 Fragaria vesca HOM05D001995 ORTHO05D001952 5.9e-07 58.2 96 37.5
FAN14G3209 Fragaria x ananassa HOM05D001995 ORTHO05D001952 5.9e-07 58.2 96 37.5
Actinidia14697 Actinidia chinensis HOM05D001995 ORTHO05D001952 7.7e-07 57.8 83 42.2
BraA04t17595Z Brassica rapa HOM05D001995 ORTHO05D001952 7.7e-07 57.8 88 44.3
Glyma.17G231600 Glycine max HOM05D001995 ORTHO05D001952 7.7e-07 57.8 83 45.8
Lalb_Chr25g0280491 Lupinus albus HOM05D001995 ORTHO05D001952 7.7e-07 57.8 117 41.9
RcHm_v2.0_Chr2g0141891 Rosa chinensis HOM05D001995 ORTHO05D001952 7.7e-07 57.8 96 37.5
Sc09g0009610 Simmondsia chinensis HOM05D001995 ORTHO05D001952 7.7e-07 57.8 93 43.0
Gohir.D09G080800 Gossypium hirsutum HOM05D001995 ORTHO05D001952 1.0e-06 57.4 87 41.4
Gorai.006G096400 Gossypium raimondii HOM05D001995 ORTHO05D001952 1.0e-06 57.4 87 41.4
Hund03366 Selenicereus undatus HOM05D001995 ORTHO05D001952 1.0e-06 57.4 104 44.2
Os06g0142600 Oryza sativa ssp. japonica HOM05D001995 ORTHO05D001952 1.3e-06 57.0 91 41.8
Peaxi162Scf00247g00514 Petunia axillaris HOM05D001995 ORTHO05D001952 1.3e-06 57.0 83 48.2
PGSC0003DMG400004837 Solanum tuberosum HOM05D001995 ORTHO05D001952 1.3e-06 57.0 104 38.5
Os01g0566100 Oryza sativa ssp. japonica HOM05D001995 ORTHO05D001952 1.7e-06 56.6 89 39.3
CANSAT25G2557 Cannabis sativa HOM05D001995 ORTHO05D001952 2.3e-06 56.2 84 45.2
Hma1.2p1_2150F.1_g315190 Hydrangea macrophylla HOM05D001995 ORTHO05D001952 2.3e-06 56.2 59 54.2
A04p20140 Brassica napus HOM05D001995 ORTHO05D001952 2.9e-06 55.8 88 42.0
CAN.G635.31 Capsicum annuum HOM05D001995 ORTHO05D001952 3.8e-06 55.5 58 46.6
Nitab4.5_0005029g0030 Nicotiana tabacum HOM05D001995 ORTHO05D001952 3.8e-06 55.5 98 39.8
Lsat_1_v5_gn_6_7561 Lactuca sativa HOM05D001995 ORTHO05D001952 5.0e-06 55.1 83 44.6
ECA233G1253 Erigeron canadensis HOM05D001995 ORTHO05D001952 6.6e-06 54.7 98 39.8
SalBow1G4435 Salvia bowleyana HOM05D001995 ORTHO05D001952 6.6e-06 54.7 83 41.0
Ciclev10024969m.g Citrus clementina HOM05D001995 ORTHO05D001952 8.6e-06 54.3 94 38.3
Nitab4.5_0000664g0010 Nicotiana tabacum HOM05D001995 ORTHO05D001952 8.6e-06 54.3 88 44.3
Rhsim11G0048100 Rhododendron simsii HOM05D001995 ORTHO05D001952 8.6e-06 54.3 83 45.8
Sed0022434 Sechium edule HOM05D001995 ORTHO05D001952 8.6e-06 54.3 108 33.3


User provided reference genes

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