Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.0e-111 406.8 201 100.0
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.3e-76 289.3 223 68.6
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.8e-65 253.1 197 67.5
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 1.1e-62 243.8 223 58.3
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 4.2e-62 241.9 226 52.2
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 9.5e-62 240.7 227 52.4
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 2.3e-60 236.1 224 53.6
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 3.0e-60 235.7 223 52.5
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 5.2e-60 235.0 223 53.4
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.2e-59 233.8 223 54.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 4.4e-59 231.9 223 53.8
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 5.7e-59 231.5 223 52.9
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.3e-58 230.3 199 58.8
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.2e-58 229.6 197 58.4
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.2e-58 229.6 223 52.5
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.3e-58 228.0 223 54.3
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 1.4e-57 226.9 232 52.6
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.4e-57 226.9 222 53.6
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 4.1e-57 225.3 224 51.8
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.4e-57 224.9 224 52.7
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 5.4e-57 224.9 234 49.6
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 7.0e-57 224.6 223 49.3
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 9.2e-57 224.2 221 49.8
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 1.2e-56 223.8 197 55.3
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 2.0e-56 223.0 227 52.9
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 2.7e-56 222.6 195 54.9
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 2.3e-55 219.5 197 56.3
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 2.9e-55 219.2 197 54.8
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 2.9e-55 219.2 200 53.5
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 5.0e-55 218.4 197 56.9
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.1e-54 217.2 197 55.3
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.5e-54 216.9 197 54.8
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.5e-54 216.9 211 53.1
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.9e-54 216.5 197 54.8
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 2.5e-54 216.1 224 52.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.5e-54 216.1 197 52.3
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 2.5e-54 216.1 197 53.3
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.3e-54 215.7 197 52.3
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 3.3e-54 215.7 197 53.8
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 3.3e-54 215.7 197 51.3
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 5.6e-54 214.9 197 51.3
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 7.3e-54 214.5 197 54.8
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 9.5e-54 214.2 197 54.3
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.8e-53 212.6 197 54.8
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 2.8e-53 212.6 243 46.5
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.1e-53 211.5 196 53.6
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 6.1e-53 211.5 199 55.8
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 6.1e-53 211.5 197 55.3
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 6.1e-53 211.5 197 53.3
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 8.0e-53 211.1 197 54.3
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 8.0e-53 211.1 196 53.1
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.4e-52 210.3 197 53.8
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.4e-52 210.3 197 53.3
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.4e-52 210.3 197 51.3
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 2.3e-52 209.5 189 55.6
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 4.0e-52 208.8 177 57.6
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 4.0e-52 208.8 197 53.3
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 5.2e-52 208.4 197 51.8
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 5.2e-52 208.4 197 52.3
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.5e-51 206.8 197 53.8
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.5e-51 206.8 198 53.5
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.6e-51 206.1 223 50.7
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.6e-51 206.1 200 53.0
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 2.6e-51 206.1 195 53.3
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.6e-51 206.1 197 51.3
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 5.8e-51 204.9 200 52.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.3e-50 203.8 197 52.8
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.3e-50 203.8 224 49.6
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 1.3e-50 203.8 197 50.8
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.7e-50 203.4 197 52.8
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 3.7e-50 202.2 194 52.6
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 4.9e-50 201.8 194 53.1
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 4.9e-50 201.8 197 48.7
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 6.4e-50 201.4 223 49.3
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 6.4e-50 201.4 184 54.3
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 8.3e-50 201.1 182 54.4
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.1e-49 200.7 197 51.3
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 1.4e-49 200.3 184 54.9
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.9e-49 199.9 196 52.6
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.4e-49 199.5 182 53.8
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.4e-49 199.5 182 53.8
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.2e-49 199.1 196 51.5
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.2e-49 199.1 215 48.8
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 3.2e-49 199.1 195 51.3
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 4.1e-49 198.7 197 49.7
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.4e-49 198.4 183 54.1
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 5.4e-49 198.4 197 50.3
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 7.0e-49 198.0 223 48.4
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.2e-48 197.2 187 54.0
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.0e-48 196.4 158 59.5
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.0e-48 196.4 229 48.5
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.0e-48 196.4 191 55.0
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 2.7e-48 196.1 197 51.3
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 4.6e-48 195.3 184 51.6
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 7.8e-48 194.5 195 49.7
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.0e-47 194.1 183 55.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.3e-47 193.7 197 51.3
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.7e-47 193.4 197 51.3
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 2.3e-47 193.0 193 51.8
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 8.6e-47 191.0 198 51.0
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 8.6e-47 191.0 196 50.0
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.1e-46 190.7 197 48.2
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.9e-46 189.9 197 47.2
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.5e-46 189.5 224 47.3
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 4.3e-46 188.7 197 51.3
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 7.3e-46 188.0 197 50.8
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 7.3e-46 188.0 183 51.9
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 9.5e-46 187.6 195 50.8
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 9.5e-46 187.6 196 48.0
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 2.1e-45 186.4 197 50.3
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 2.1e-45 186.4 197 50.3
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 2.8e-45 186.0 199 49.7
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 3.6e-45 185.7 197 49.7
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 3.6e-45 185.7 196 51.0
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 6.2e-45 184.9 197 49.2
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 5.8e-43 178.3 197 46.2
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.7e-42 176.8 110 67.3
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 8.3e-42 174.5 109 70.6
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 4.1e-41 172.2 183 48.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 7.0e-41 171.4 195 46.2
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 1.2e-40 170.6 177 50.3
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 4.6e-40 168.7 97 75.3
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 7.8e-40 167.9 126 61.1
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 2.3e-39 166.4 189 43.9
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 7.3e-38 161.4 154 53.9
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 1.1e-36 157.5 110 61.8
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 2.0e-35 153.3 167 51.5
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.7e-34 150.2 187 42.8
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 3.7e-34 149.1 192 41.1
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.9e-33 146.7 164 48.8
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.1e-32 143.3 178 43.3
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 2.3e-31 139.8 165 49.1
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.1e-30 137.5 179 39.7
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 3.8e-26 122.5 156 39.7
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 3.5e-24 115.9 111 52.3
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 4.3e-22 109.0 69 68.1
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 7.3e-22 108.2 110 46.4
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 2.8e-21 106.3 154 35.1
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.1e-20 104.4 198 35.4
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.4e-20 103.2 58 89.7
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 2.4e-20 103.2 73 60.3
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 3.2e-17 92.8 108 38.9
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.6e-16 90.5 123 40.7
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 2.3e-15 86.7 85 56.5
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.9e-14 83.6 124 38.7
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 4.8e-13 79.0 103 42.7
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 6.9e-12 75.1 51 76.5
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.3e-10 70.9 161 32.9
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.4e-09 65.5 44 61.4
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 7.4e-06 55.1 36 61.1


User provided reference genes

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