Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0071700 Rhododendron simsii HOM05D006606 ORTHO05D008429 3.1e-212 741.5 369 100.0
Dinv22706 Davidia involucrata HOM05D006606 ORTHO05D008429 9.0e-159 563.9 374 75.4
CSS0008381 Camellia sinensis var. sinensis HOM05D006606 ORTHO05D008429 5.8e-158 561.2 375 76.3
CSS0041194 Camellia sinensis var. sinensis HOM05D006606 ORTHO05D008429 7.6e-158 560.8 375 76.3
Hma1.2p1_1286F.1_g273130 Hydrangea macrophylla HOM05D006606 ORTHO05D008429 1.6e-155 553.1 375 74.4
Actinidia28936 Actinidia chinensis HOM05D006606 ORTHO05D008429 1.1e-153 547.0 319 84.6
PGSC0003DMG401004586 Solanum tuberosum HOM05D006606 ORTHO05D008429 5.3e-151 538.1 372 71.8
Nitab4.5_0006519g0030 Nicotiana tabacum HOM05D006606 ORTHO05D008429 9.0e-151 537.3 383 70.8
Solyc12g098710.2 Solanum lycopersicum HOM05D006606 ORTHO05D008429 1.2e-150 537.0 381 70.6
Nitab4.5_0000978g0190 Nicotiana tabacum HOM05D006606 ORTHO05D008429 1.3e-149 533.5 380 69.7
CAN.G484.128 Capsicum annuum HOM05D006606 ORTHO05D008429 1.7e-149 533.1 379 70.4
SalBow6G4530 Salvia bowleyana HOM05D006606 ORTHO05D008429 2.2e-149 532.7 379 72.6
Cc03_g10820 Coffea canephora HOM05D006606 ORTHO05D008429 1.9e-148 529.6 381 71.1
HanXRQChr10g0293961 Helianthus annuus HOM05D006606 ORTHO05D008429 3.2e-148 528.9 373 71.8
Cpa.g.sc8.304 Carica papaya HOM05D006606 ORTHO05D008429 4.2e-148 528.5 380 70.5
CiPaw.03G116300 Carya illinoinensis HOM05D006606 ORTHO05D008429 5.4e-148 528.1 384 71.4
Cfa008709 Carpinus fangiana HOM05D006606 ORTHO05D008429 1.0e-146 523.9 376 71.8
MSTRG.21987 Avicennia marina HOM05D006606 ORTHO05D008429 3.9e-146 521.9 370 71.6
Potri.014G146900 Populus trichocarpa HOM05D006606 ORTHO05D008429 3.9e-146 521.9 375 71.5
TAR362G1133 Trochodendron aralioides HOM05D006606 ORTHO05D008429 8.7e-146 520.8 372 70.4
GSVIVG01031662001 Vitis vinifera HOM05D006606 ORTHO05D008429 1.5e-145 520.0 308 81.8
Glyma.18G004400 Glycine max HOM05D006606 ORTHO05D008429 3.3e-145 518.8 330 76.1
PSO017G6954 Papaver somniferum HOM05D006606 ORTHO05D008429 1.3e-144 516.9 316 79.4
Migut.N00458 Erythranthe guttata HOM05D006606 ORTHO05D008429 2.8e-144 515.8 379 69.9
Glyma.11G252500 Glycine max HOM05D006606 ORTHO05D008429 2.8e-144 515.8 317 78.5
Gohir.D02G071700 Gossypium hirsutum HOM05D006606 ORTHO05D008429 3.7e-144 515.4 371 69.3
Gorai.005G080900 Gossypium raimondii HOM05D006606 ORTHO05D008429 4.8e-144 515.0 371 69.3
QL10p044478 Quercus lobata HOM05D006606 ORTHO05D008429 6.2e-144 514.6 374 72.2
Lsat_1_v5_gn_2_48240 Lactuca sativa HOM05D006606 ORTHO05D008429 1.1e-143 513.8 373 71.8
Ah.04g149880 Amaranthus hybridus HOM05D006606 ORTHO05D008429 1.4e-143 513.5 374 68.4
Duzib041G0430 Durio zibethinus HOM05D006606 ORTHO05D008429 1.4e-143 513.5 308 78.6
SGA_v2.0_scaffold178G39486 Striga asiatica HOM05D006606 ORTHO05D008429 3.1e-143 512.3 371 70.4
Gohir.A02G065800 Gossypium hirsutum HOM05D006606 ORTHO05D008429 4.0e-143 511.9 371 69.5
Thecc.08G146500 Theobroma cacao HOM05D006606 ORTHO05D008429 1.2e-142 510.4 360 71.4
CANSAT78G0692 Cannabis sativa HOM05D006606 ORTHO05D008429 1.5e-142 510.0 364 70.1
PSO675G4216 Papaver somniferum HOM05D006606 ORTHO05D008429 1.5e-142 510.0 377 70.6
RcHm_v2.0_Chr4g0410061 Rosa chinensis HOM05D006606 ORTHO05D008429 1.5e-142 510.0 366 71.3
Aqoxy2G04062 Aquilegia oxysepala HOM05D006606 ORTHO05D008429 7.6e-142 507.7 378 69.0
MELO3C017709.2 Cucumis melo HOM05D006606 ORTHO05D008429 7.6e-142 507.7 366 70.8
Lj4g0003716 Lotus japonicus HOM05D006606 ORTHO05D008429 7.6e-142 507.7 375 69.3
Phvul.001G263600 Phaseolus vulgaris HOM05D006606 ORTHO05D008429 7.6e-142 507.7 359 70.5
arahy.Tifrunner.gnm1.ann1.B1TKD1 Arachis hypogaea HOM05D006606 ORTHO05D008429 9.9e-142 507.3 296 80.4
FAN12G1058 Fragaria x ananassa HOM05D006606 ORTHO05D008429 1.7e-141 506.5 374 70.1
FAN12G2609 Fragaria x ananassa HOM05D006606 ORTHO05D008429 1.7e-141 506.5 374 70.1
FAN22G0658 Fragaria x ananassa HOM05D006606 ORTHO05D008429 2.2e-141 506.1 376 68.4
Oeu013395.1 Olea europaea HOM05D006606 ORTHO05D008429 2.9e-141 505.8 307 78.5
CsaV3_4G003370 Cucumis sativus L. HOM05D006606 ORTHO05D008429 3.8e-141 505.4 368 70.7
FAN17G1362 Fragaria x ananassa HOM05D006606 ORTHO05D008429 4.9e-141 505.0 376 68.6
FvH4_4g12260 Fragaria vesca HOM05D006606 ORTHO05D008429 6.4e-141 504.6 303 79.5
TPR.G18107 Trifolium pratense HOM05D006606 ORTHO05D008429 6.4e-141 504.6 373 67.8
Carub.0001s1037 Capsella rubella HOM05D006606 ORTHO05D008429 8.4e-141 504.2 296 80.1
VMungo1383G1705 Vigna mungo HOM05D006606 ORTHO05D008429 8.4e-141 504.2 300 79.3
C05p09200 Brassica napus HOM05D006606 ORTHO05D008429 1.4e-140 503.4 296 79.1
ClCG07G015730 Citrullus lanatus HOM05D006606 ORTHO05D008429 1.4e-140 503.4 366 70.5
Medtr3g084950 Medicago truncatula HOM05D006606 ORTHO05D008429 1.9e-140 503.1 370 68.4
DCAR_023800 Daucus carota HOM05D006606 ORTHO05D008429 2.5e-140 502.7 373 69.2
Lalb_Chr23g0278211 Lupinus albus HOM05D006606 ORTHO05D008429 3.2e-140 502.3 373 67.8
unitig_22.g6833 Utricularia gibba HOM05D006606 ORTHO05D008429 3.2e-140 502.3 317 76.3
AL1G21760 Arabidopsis lyrata HOM05D006606 ORTHO05D008429 5.5e-140 501.5 365 69.0
AUR62020943 Chenopodium quinoa HOM05D006606 ORTHO05D008429 5.5e-140 501.5 370 67.3
Prupe.1G177500 Prunus persica HOM05D006606 ORTHO05D008429 5.5e-140 501.5 368 70.1
Sabra14G0110300 Salix brachista HOM05D006606 ORTHO05D008429 5.5e-140 501.5 421 63.7
Sp1g09530 Schrenkiella parvula HOM05D006606 ORTHO05D008429 5.5e-140 501.5 308 77.6
Lalb_Chr11g0075821 Lupinus albus HOM05D006606 ORTHO05D008429 7.1e-140 501.1 325 74.5
Aa31LG1G4020 Aethionema arabicum HOM05D006606 ORTHO05D008429 9.3e-140 500.7 296 80.1
TWI09G1191 Tripterygium wilfordii HOM05D006606 ORTHO05D008429 9.3e-140 500.7 372 69.1
A06p07610 Brassica napus HOM05D006606 ORTHO05D008429 1.2e-139 500.4 351 69.2
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.2e-139 500.4 358 68.4
BraA06t23963Z Brassica rapa HOM05D006606 ORTHO05D008429 1.2e-139 500.4 351 69.2
AT1G10830 Arabidopsis thaliana HOM05D006606 ORTHO05D008429 2.1e-139 499.6 358 69.3
arahy.Tifrunner.gnm1.ann1.V8KL47 Arachis hypogaea HOM05D006606 ORTHO05D008429 2.7e-139 499.2 383 66.8
Thhalv10007996m.g Eutrema salsugineum HOM05D006606 ORTHO05D008429 3.5e-139 498.8 356 69.1
CARHR011050 Cardamine hirsuta HOM05D006606 ORTHO05D008429 7.9e-139 497.7 366 68.9
PGR119G1918 Punica granatum HOM05D006606 ORTHO05D008429 7.9e-139 497.7 302 79.5
Nn1g09788 Nelumbo nucifera HOM05D006606 ORTHO05D008429 1.0e-138 497.3 379 68.9
Ciclev10020648m.g Citrus clementina HOM05D006606 ORTHO05D008429 1.8e-138 496.5 290 80.0
MD04G1028100 Malus domestica HOM05D006606 ORTHO05D008429 2.3e-138 496.1 374 67.6
Sed0006939 Sechium edule HOM05D006606 ORTHO05D008429 3.0e-138 495.7 367 69.8
Oeu007220.2 Olea europaea HOM05D006606 ORTHO05D008429 5.1e-138 495.0 374 68.2
Psat7g076840 Pisum sativum HOM05D006606 ORTHO05D008429 5.1e-138 495.0 372 66.4
Ca_18015_v3 Cicer arietinum L. HOM05D006606 ORTHO05D008429 1.1e-137 493.8 303 76.9
Sc19g0007700 Simmondsia chinensis HOM05D006606 ORTHO05D008429 1.5e-137 493.4 358 70.4
THA.LOC104823658 Tarenaya hassleriana HOM05D006606 ORTHO05D008429 1.9e-137 493.0 370 67.8
Atru.chr3.1730 Acer truncatum HOM05D006606 ORTHO05D008429 9.6e-137 490.7 335 71.3
Medtr8g097190 Medicago truncatula HOM05D006606 ORTHO05D008429 2.1e-136 489.6 374 66.8
Os12g0405200 Oryza sativa ssp. japonica HOM05D006606 ORTHO05D008429 3.7e-136 488.8 374 64.4
Ca_16442_v3 Cicer arietinum L. HOM05D006606 ORTHO05D008429 6.2e-136 488.0 302 75.5
Eucgr.C03850 Eucalyptus grandis HOM05D006606 ORTHO05D008429 1.1e-135 487.3 384 65.9
ATR0561G173 Amborella trichopoda HOM05D006606 ORTHO05D008429 2.6e-134 482.6 381 65.4
Haze_11718 Corylus avellana HOM05D006606 ORTHO05D008429 1.0e-133 480.7 429 60.6
Peaxi162Scf00378g00631 Petunia axillaris HOM05D006606 ORTHO05D008429 1.9e-132 476.5 391 63.7
FAN07G1739 Fragaria x ananassa HOM05D006606 ORTHO05D008429 2.7e-131 472.6 424 59.7
ECA238G2565 Erigeron canadensis HOM05D001656 ORTHO05D003489 6.7e-130 468.0 283 79.2
Zm00001eb408760 Zea mays HOM05D006606 ORTHO05D008429 1.5e-129 466.8 332 68.1
EL10Ac3g07392 Beta vulgaris HOM05D006606 ORTHO05D008429 1.8e-127 459.9 373 63.8
BcaC05g24964 Brassica carinata HOM05D006606 ORTHO05D008429 5.3e-127 458.4 365 64.7
Pp3c1_22590 Physcomitrium patens HOM05D006606 ORTHO05D008429 1.0e-122 444.1 299 68.2
AUR62018480 Chenopodium quinoa HOM05D006606 ORTHO05D008429 4.1e-119 432.2 331 66.2
Lj3A376T54 Lonicera japonica HOM05D006606 ORTHO05D008429 1.5e-118 430.3 229 89.1
SMO270G0095 Selaginella moellendorffii HOM05D006606 ORTHO05D008429 2.6e-118 429.5 289 68.9
CBR_g17600 Chara braunii HOM05D006606 ORTHO05D008429 1.3e-117 427.2 312 64.7
Mapoly0040s0091 Marchantia polymorpha HOM05D006606 ORTHO05D008429 1.4e-116 423.7 315 63.8
AagrBONN_evm.TU.Sc2ySwM_228.2148 Anthoceros agrestis HOM05D006606 ORTHO05D008429 3.2e-116 422.5 311 65.3
Pp3c17_7640 Physcomitrium patens HOM05D006606 ORTHO05D008429 3.2e-116 422.5 289 67.1
Mapoly0040s0092 Marchantia polymorpha HOM05D006606 ORTHO05D008429 7.2e-116 421.4 315 63.5
COL.COLO4_38511 Corchorus olitorius HOM05D006606 ORTHO05D008429 3.9e-106 389.0 383 56.9
Lj3A357T51 Lonicera japonica HOM05D006606 ORTHO05D008429 4.1e-95 352.4 182 89.0
Cre19.g750247 Chlamydomonas reinhardtii HOM05D006606 ORTHO05D008429 2.2e-93 346.7 290 59.7
HPP92_024552 Vanilla planifolia HOM05D006606 ORTHO05D008429 2.7e-91 339.7 242 69.8
Sopen12g033460 Solanum pennellii HOM05D006606 ORTHO05D008429 1.1e-87 327.8 267 63.7
SEGI_35229 Sequoiadendron giganteum HOM05D006606 ORTHO05D008429 4.2e-84 315.8 215 68.4
Psat5g098600 Pisum sativum HOM05D006606 ORTHO05D008429 1.8e-82 310.5 260 64.6
Hund24463 Selenicereus undatus HOM05D006606 ORTHO05D008429 4.1e-79 299.3 275 58.5
Manes.01G001200 Manihot esculenta HOM05D006606 ORTHO05D008429 1.5e-76 290.8 267 59.9
CDE09G0731 Ceratophyllum demersum HOM05D006606 ORTHO05D008429 4.7e-75 285.8 263 58.6
TPR.G26571 Trifolium pratense HOM05D006606 ORTHO05D008429 2.2e-72 276.9 371 46.9
Thhalv10000634m.g Eutrema salsugineum HOM05D006606 ORTHO05D008429 2.7e-46 190.3 242 48.8
VMungo1383G0479 Vigna mungo HOM05D000517 ORTHO05D000751 4.6e-22 109.8 94 57.4
Lj3C357T11 Lonicera japonica HOM05D006606 ORTHO05D008429 1.3e-21 108.2 152 51.3
Lj3C376T8 Lonicera japonica HOM05D006606 ORTHO05D008429 2.3e-21 107.5 153 50.3
Thhalv10029367m.g Eutrema salsugineum HOM05D006606 ORTHO05D008429 1.1e-15 88.6 63 66.7
PSO017G3682 Papaver somniferum HOM05D006606 ORTHO05D008429 9.0e-10 68.9 36 80.6


User provided reference genes

Program Settings