Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 2370.9 1169 100.0
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1726.1 1169 74.9
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1681.4 1170 72.3
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1625.1 1280 67.9
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1513.4 1176 65.9
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1481.1 1179 65.2
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1445.3 1178 62.1
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1444.5 1158 63.0
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1440.6 1158 63.1
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1439.9 1160 62.4
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1436.8 1164 62.5
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1422.9 1179 62.5
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1418.3 1170 61.9
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1417.1 1170 62.2
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1412.5 1165 61.8
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1410.6 1168 61.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1401.0 1157 60.8
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1400.2 1139 62.0
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1393.3 1165 60.3
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1390.2 1166 59.3
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1389.4 1167 59.6
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1384.8 1159 59.4
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1384.4 1159 60.3
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1377.8 1158 60.5
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1374.8 1173 59.7
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1357.4 1170 58.5
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1355.9 1157 59.6
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1354.3 1167 59.9
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1352.0 1159 59.2
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1351.3 1197 58.0
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1345.1 1172 59.9
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1343.6 1168 57.7
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1340.5 1171 59.7
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1339.7 1169 58.3
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1338.2 1168 59.3
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1337.4 1161 58.5
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1336.6 1169 58.5
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1335.9 1250 56.1
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1333.9 1161 58.9
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1330.5 1156 58.1
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1328.5 1178 59.2
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1327.4 1125 59.6
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1158 59.4
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1326.6 1173 57.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1321.2 1168 58.6
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1320.8 1172 57.8
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1317.4 1159 57.8
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1317.0 1164 57.6
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1316.2 1160 57.8
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1313.5 1173 57.6
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1309.7 1173 57.3
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1307.7 1191 57.1
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1306.6 1169 57.3
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1304.7 1169 57.3
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1303.5 1166 56.9
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1302.7 1169 57.1
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1299.3 1174 57.3
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1298.9 1162 57.3
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1298.1 1166 56.8
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1295.8 1173 56.9
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1295.8 1157 57.7
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1293.9 1158 56.8
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1291.9 1160 56.7
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1288.5 1166 56.9
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1286.6 1159 56.3
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1286.6 1167 56.9
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1283.1 1167 56.9
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1278.5 1170 56.0
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1278.1 1161 55.8
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1278.1 1171 56.4
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1277.7 1166 56.1
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1277.3 1169 56.7
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1275.0 1167 56.7
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1274.2 1167 56.6
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1268.4 1184 55.9
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1264.2 1197 55.6
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1263.8 1169 55.9
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1248.4 1241 53.3
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1246.9 1165 55.7
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1242.6 1169 55.8
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1229.5 1147 56.9
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1226.1 1160 54.7
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1223.4 1162 55.2
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1218.4 1149 54.3
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1179.5 1166 53.4
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1176.0 1165 53.1
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1167.9 1158 51.6
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1150.6 1141 51.9
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1139.0 1151 52.3
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1097.4 963 57.9
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 0.0e+00 1088.9 945 58.3
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 0.0e+00 1078.2 1171 50.6
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.0e-285 985.7 1134 46.1
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 6.1e-270 934.9 976 51.8
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.0e-264 917.5 1159 44.2
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 8.0e-254 881.3 747 59.7
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 3.5e-249 865.9 998 48.9
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 3.6e-230 802.7 835 51.1
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 8.1e-230 801.6 742 55.7
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.4e-226 790.8 1173 38.8
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 7.8e-225 785.0 550 69.1
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.4e-205 720.3 746 50.1
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-201 708.0 800 49.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.5e-201 706.4 898 45.0
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.3e-200 704.5 775 47.0
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 3.0e-192 676.8 607 59.1
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.1e-183 648.3 915 40.1
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 3.1e-181 640.2 560 58.0
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 8.5e-179 632.1 614 54.6
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 4.2e-178 629.8 1102 36.2
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.0e-176 625.2 1162 35.8
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.0e-164 584.3 524 58.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.5e-162 578.2 970 35.5
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 7.2e-154 549.3 559 51.3
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.2e-151 542.0 511 56.0
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 8.6e-147 525.8 414 64.3
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.2e-121 442.2 489 46.6
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.3e-120 438.0 387 57.9
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.4e-117 428.7 400 55.0
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 9.3e-109 399.4 388 51.8
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.9e-106 391.7 933 30.1
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 4.6e-92 344.0 220 76.8
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.5e-87 328.9 1217 26.0
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.2e-85 320.9 293 57.0
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.4e-69 269.2 289 48.8
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 4.6e-68 264.2 255 54.5
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.7e-65 255.8 249 53.8
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.7e-65 255.8 177 71.8
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-60 239.2 422 38.4
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 3.0e-59 235.0 303 44.9
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.7e-58 230.7 1050 24.4
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 9.7e-58 229.9 154 68.2
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 4.1e-56 224.6 308 43.8
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.9e-53 215.7 241 45.6
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 4.4e-50 204.5 1070 25.2
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 2.8e-49 201.8 346 39.3
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-43 182.6 124 69.4
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 4.8e-41 174.5 246 42.7
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.0e-35 155.2 187 46.5
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 4.9e-33 147.9 106 67.0
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-29 136.7 135 53.3
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.9e-29 136.0 364 28.8
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.4e-27 129.8 102 64.7
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 2.3e-27 129.0 106 61.3
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 5.7e-26 124.4 161 44.1
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.2e-25 122.5 147 49.0
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 5.9e-23 114.4 154 44.2
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 3.3e-21 108.6 72 63.9
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 6.8e-19 100.9 163 35.6
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 4.1e-16 91.7 120 39.2
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 7.8e-15 87.4 70 60.0
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 3.0e-14 85.5 124 41.1
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 3.9e-14 85.1 70 58.6
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 8.9e-11 73.9 81 48.1
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.2e-10 73.6 158 30.4
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.7e-06 59.7 45 64.4


User provided reference genes

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