Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0059300 Rhododendron simsii HOM05D000290 ORTHO05D002418 6.1e-64 247.3 121 100.0
Rhsim06G0177200 Rhododendron simsii HOM05D000290 ORTHO05D002418 2.9e-34 148.7 145 55.9
vmacro12076 Vaccinium macrocarpon HOM05D000290 ORTHO05D002418 1.1e-33 146.7 145 55.2
CSS0027298 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D002418 5.6e-33 144.4 145 53.8
CSS0029025 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D002418 5.6e-33 144.4 145 53.8
Lj1C797T9 Lonicera japonica HOM05D000290 ORTHO05D002418 1.4e-31 139.8 88 72.7
Haze_12608 Corylus avellana HOM05D000290 ORTHO05D002418 6.8e-31 137.5 128 53.9
Haze_12619 Corylus avellana HOM05D000290 ORTHO05D002418 6.8e-31 137.5 128 53.9
Actinidia09796 Actinidia chinensis HOM05D000290 ORTHO05D002418 7.5e-30 134.0 145 52.4
RcHm_v2.0_Chr2g0155831 Rosa chinensis HOM05D000290 ORTHO05D002418 1.1e-28 130.2 145 50.3
Cpa.g.sc211.33 Carica papaya HOM05D000290 ORTHO05D002418 1.4e-28 129.8 145 49.7
Nitab4.5_0005425g0040 Nicotiana tabacum HOM05D000290 ORTHO05D002418 1.8e-28 129.4 137 51.8
Peaxi162Scf00802g00035 Petunia axillaris HOM05D000290 ORTHO05D002418 1.8e-28 129.4 141 49.6
Glyma.13G007200 Glycine max HOM05D000290 ORTHO05D002418 2.4e-28 129.0 144 47.9
Nitab4.5_0006992g0060 Nicotiana tabacum HOM05D000290 ORTHO05D002418 3.2e-28 128.6 137 49.6
arahy.Tifrunner.gnm1.ann1.DAY8FD Arachis hypogaea HOM05D000290 ORTHO05D002418 4.1e-28 128.3 147 46.3
Phvul.007G121568 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 4.1e-28 128.3 144 47.2
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 7.0e-28 127.5 142 48.6
QL04p067868 Quercus lobata HOM05D000290 ORTHO05D002418 7.0e-28 127.5 145 47.6
Cfa014217 Carpinus fangiana HOM05D000290 ORTHO05D002418 9.2e-28 127.1 146 47.9
Eucgr.H00850 Eucalyptus grandis HOM05D000290 ORTHO05D002418 9.2e-28 127.1 148 46.6
Eucgr.H00851 Eucalyptus grandis HOM05D000290 ORTHO05D002418 1.2e-27 126.7 148 45.9
FAN02G3426 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.2e-27 126.7 145 48.3
FAN05G3879 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.2e-27 126.7 145 48.3
FAN09G0368 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.2e-27 126.7 145 48.3
FvH4_6g40570 Fragaria vesca HOM05D000290 ORTHO05D002418 1.6e-27 126.3 145 48.3
HanXRQChr04g0126421 Helianthus annuus HOM05D000290 ORTHO05D002418 1.6e-27 126.3 145 49.7
PGR083G1030 Punica granatum HOM05D000290 ORTHO05D002418 1.6e-27 126.3 144 46.5
Eucgr.L01058 Eucalyptus grandis HOM05D000290 ORTHO05D002418 2.7e-27 125.6 148 45.9
MD09G1128300 Malus domestica HOM05D000290 ORTHO05D002418 2.7e-27 125.6 145 46.2
THA.LOC104822435 Tarenaya hassleriana HOM05D000290 ORTHO05D002418 2.7e-27 125.6 145 46.9
TPR.G22475 Trifolium pratense HOM05D000290 ORTHO05D002418 3.5e-27 125.2 143 47.6
CiPaw.03G282400 Carya illinoinensis HOM05D000290 ORTHO05D002418 4.6e-27 124.8 145 45.5
Ciclev10014451m.g Citrus clementina HOM05D000290 ORTHO05D002418 4.6e-27 124.8 137 47.4
Duzib138G1726 Durio zibethinus HOM05D000290 ORTHO05D002418 1.0e-26 123.6 145 44.8
Psat5g104600 Pisum sativum HOM05D000290 ORTHO05D002418 1.0e-26 123.6 137 48.2
Ca_16344_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 1.3e-26 123.2 145 48.3
Oeu033691.1 Olea europaea HOM05D000290 ORTHO05D002418 1.3e-26 123.2 134 49.3
Oeu033692.1 Olea europaea HOM05D000290 ORTHO05D002418 1.3e-26 123.2 134 49.3
Prupe.3G196900 Prunus persica HOM05D000290 ORTHO05D002418 1.7e-26 122.9 145 46.9
Gohir.A07G169878 Gossypium hirsutum HOM05D000290 ORTHO05D002418 2.3e-26 122.5 137 46.7
Sopen07g023960 Solanum pennellii HOM05D000290 ORTHO05D002418 2.3e-26 122.5 137 48.9
Nn1g07516 Nelumbo nucifera HOM05D000290 ORTHO05D002418 3.0e-26 122.1 148 45.3
Sed0007306 Sechium edule HOM05D000290 ORTHO05D002418 3.0e-26 122.1 146 43.8
Solyc07g045420.4 Solanum lycopersicum HOM05D000290 ORTHO05D002418 3.0e-26 122.1 137 48.9
Aa31LG5G18280 Aethionema arabicum HOM05D000290 ORTHO05D002418 3.9e-26 121.7 144 45.1
CARHR082410 Cardamine hirsuta HOM05D000290 ORTHO05D002418 6.6e-26 120.9 142 47.2
TAR629G1956 Trochodendron aralioides HOM05D000290 ORTHO05D002418 6.6e-26 120.9 144 47.2
Carub.0003s0728 Capsella rubella HOM05D000290 ORTHO05D002418 8.6e-26 120.6 142 47.2
CAN.G177.13 Capsicum annuum HOM05D000290 ORTHO05D002418 8.6e-26 120.6 137 48.2
ECA236G3612 Erigeron canadensis HOM05D000290 ORTHO05D002418 8.6e-26 120.6 133 51.1
PSO675G0113 Papaver somniferum HOM05D000290 ORTHO05D002418 8.6e-26 120.6 142 47.2
GSVIVG01030099001 Vitis vinifera HOM05D000290 ORTHO05D002418 8.6e-26 120.6 145 44.8
ClCG02G009140 Citrullus lanatus HOM05D000290 ORTHO05D002418 1.1e-25 120.2 146 43.2
Thhalv10020179m.g Eutrema salsugineum HOM05D000290 ORTHO05D002418 1.1e-25 120.2 142 45.1
PSO541G1439 Papaver somniferum HOM05D000290 ORTHO05D002418 1.1e-25 120.2 142 47.2
AL3G19060 Arabidopsis lyrata HOM05D000290 ORTHO05D002418 1.5e-25 119.8 142 45.8
BcaC05g29564 Brassica carinata HOM05D000290 ORTHO05D002418 1.5e-25 119.8 143 45.5
Sc21g0000580 Simmondsia chinensis HOM05D000290 ORTHO05D002418 1.5e-25 119.8 138 47.1
Thecc.01G196900 Theobroma cacao HOM05D000290 ORTHO05D002418 1.5e-25 119.8 137 46.7
Gohir.D07G170800 Gossypium hirsutum HOM05D000290 ORTHO05D002418 1.9e-25 119.4 137 46.0
Gorai.001G191200 Gossypium raimondii HOM05D000290 ORTHO05D002418 1.9e-25 119.4 137 46.0
Medtr3g082750 Medicago truncatula HOM05D000290 ORTHO05D002418 2.5e-25 119.0 143 46.9
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 3.3e-25 118.6 147 45.6
CANSAT64G2620 Cannabis sativa HOM05D000290 ORTHO05D002418 3.3e-25 118.6 137 46.7
Lalb_Chr04g0247111 Lupinus albus HOM05D000290 ORTHO05D002418 3.3e-25 118.6 136 48.5
SalBow7G4299 Salvia bowleyana HOM05D000290 ORTHO05D002418 3.3e-25 118.6 145 47.6
AT3G07700 Arabidopsis thaliana HOM05D000290 ORTHO05D002418 4.3e-25 118.2 142 44.4
MSTRG.6634 Avicennia marina HOM05D000290 ORTHO05D002418 4.3e-25 118.2 135 46.7
MELO3C025944.2 Cucumis melo HOM05D000290 ORTHO05D002418 4.3e-25 118.2 146 42.5
Sp3g06640 Schrenkiella parvula HOM05D000290 ORTHO05D002418 5.6e-25 117.9 133 46.6
Cc05_g01630 Coffea canephora HOM05D000290 ORTHO05D002418 7.3e-25 117.5 133 48.1
CsaV3_6G009700 Cucumis sativus L. HOM05D000290 ORTHO05D002418 7.3e-25 117.5 146 42.5
FAN14G4964 Fragaria x ananassa HOM05D000290 ORTHO05D002418 7.3e-25 117.5 168 41.7
Actinidia35202 Actinidia chinensis HOM05D000290 ORTHO05D002418 9.5e-25 117.1 145 46.2
Migut.M00050 Erythranthe guttata HOM05D000290 ORTHO05D002418 9.5e-25 117.1 135 46.7
A05p40510 Brassica napus HOM05D000290 ORTHO05D002418 1.2e-24 116.7 133 45.9
C05p59620 Brassica napus HOM05D000290 ORTHO05D002418 1.2e-24 116.7 133 45.9
BolC5t34616H Brassica oleracea HOM05D000290 ORTHO05D002418 1.2e-24 116.7 133 45.9
BraA05t22783Z Brassica rapa HOM05D000290 ORTHO05D002418 1.2e-24 116.7 133 45.9
Sed0004350 Sechium edule HOM05D000290 ORTHO05D002418 1.2e-24 116.7 134 45.5
Sabra14G0128700 Salix brachista HOM05D000290 ORTHO05D002418 1.6e-24 116.3 135 43.7
DCAR_021089 Daucus carota HOM05D000879 ORTHO05D002418 2.1e-24 115.9 136 47.1
Ah.01g013960 Amaranthus hybridus HOM05D000290 ORTHO05D002418 2.8e-24 115.5 134 47.8
Potri.014G168600 Populus trichocarpa HOM05D000290 ORTHO05D002418 2.8e-24 115.5 135 43.7
TWI18G0719 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 2.8e-24 115.5 135 45.9
Lj8C136T8 Lonicera japonica HOM05D000290 ORTHO05D002418 4.7e-24 114.8 171 40.9
Lj6g0018577 Lotus japonicus HOM05D000290 ORTHO05D002418 4.7e-24 114.8 160 41.2
Manes.12G063300 Manihot esculenta HOM05D000290 ORTHO05D002418 4.7e-24 114.8 145 40.7
VMungo0647G1039 Vigna mungo HOM05D000290 ORTHO05D002418 4.7e-24 114.8 127 49.6
EL10Ac9g22671 Beta vulgaris HOM05D000290 ORTHO05D002418 6.2e-24 114.4 134 47.0
Lsat_1_v5_gn_7_96461 Lactuca sativa HOM05D000290 ORTHO05D002418 6.2e-24 114.4 133 49.6
Os09g0250700 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D002418 6.2e-24 114.4 145 42.1
AUR62029122 Chenopodium quinoa HOM05D000290 ORTHO05D002418 1.0e-23 113.6 134 47.8
Zm00001eb225060 Zea mays HOM05D000290 ORTHO05D002418 1.0e-23 113.6 130 46.2
VMungo0251G2830 Vigna mungo HOM05D000290 ORTHO05D002418 1.4e-23 113.2 136 44.9
Atru.chr6.3403 Acer truncatum HOM05D000290 ORTHO05D002418 1.8e-23 112.8 132 47.0
AUR62014999 Chenopodium quinoa HOM05D000290 ORTHO05D002418 2.3e-23 112.5 134 47.0
Phvul.008G288500 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 8.9e-23 110.5 137 43.1
HanXRQChr11g0328941 Helianthus annuus HOM05D000290 ORTHO05D002418 2.0e-22 109.4 133 46.6
MSTRG.12250 Avicennia marina HOM05D000290 ORTHO05D002418 2.6e-22 109.0 158 39.9
ATR0691G231 Amborella trichopoda HOM05D000290 ORTHO05D002418 3.4e-22 108.6 135 41.5
GSVIVG01030106001 Vitis vinifera HOM05D000290 ORTHO05D002418 5.8e-22 107.8 131 45.0
SGA_v2.0_scaffold181G39692 Striga asiatica HOM05D000290 ORTHO05D002418 7.5e-22 107.5 135 43.0
HPP92_027051 Vanilla planifolia HOM05D000290 ORTHO05D002418 3.7e-21 105.1 135 40.7
Atru.chr6.3402 Acer truncatum HOM05D000290 ORTHO05D002418 6.4e-21 104.4 144 41.0
unitig_85.g27400 Utricularia gibba HOM05D000290 ORTHO05D002418 1.1e-20 103.6 134 41.0
Glyma.14G004500 Glycine max HOM05D000290 ORTHO05D002418 1.4e-20 103.2 131 42.7
Glyma.02G308600 Glycine max HOM05D000290 ORTHO05D002418 4.1e-20 101.7 131 42.7
Ciclev10014453m.g Citrus clementina HOM05D000290 ORTHO05D002418 1.6e-19 99.8 144 37.5
Mapoly0186s0017 Marchantia polymorpha HOM05D000290 ORTHO05D002418 2.7e-19 99.0 136 40.4
SGA_v2.0_scaffold49G18404 Striga asiatica HOM05D000290 ORTHO05D002418 3.5e-19 98.6 119 46.2
CDE02G4109 Ceratophyllum demersum HOM05D000290 ORTHO05D002418 4.6e-19 98.2 129 40.3
Duzib133G1276 Durio zibethinus HOM05D000290 ORTHO05D002418 4.6e-19 98.2 129 41.1
Migut.O00812 Erythranthe guttata HOM05D000290 ORTHO05D002418 7.8e-19 97.4 137 41.6
unitig_46.g18338 Utricularia gibba HOM05D000290 ORTHO05D002418 1.7e-18 96.3 127 43.3
Pp3c15_9220 Physcomitrium patens HOM05D000290 ORTHO05D002418 8.6e-18 94.0 126 42.1
SMO358G0591 Selaginella moellendorffii HOM05D000290 ORTHO05D002418 1.5e-17 93.2 137 37.2
Lsat_1_v5_gn_9_103561 Lactuca sativa HOM05D000290 ORTHO05D002418 9.5e-17 90.5 135 39.3
unitig_37.g12594 Utricularia gibba HOM05D000290 ORTHO05D002418 5.2e-15 84.7 135 39.3
CBR_g20993 Chara braunii HOM05D000290 ORTHO05D002418 1.3e-13 80.1 128 36.7
Zm00001eb074040 Zea mays HOM05D000883 ORTHO05D012122 1.9e-12 76.3 76 48.7
Psat2g132840 Pisum sativum HOM05D000290 ORTHO05D002418 2.4e-12 75.9 148 35.1
Hund08301 Selenicereus undatus HOM05D008591 ORTHO05D010549 3.5e-11 72.0 86 47.7
Psat4g203080 Pisum sativum HOM05D000290 ORTHO05D002418 2.1e-08 62.8 34 79.4
Dinv26599 Davidia involucrata HOM05D000290 ORTHO05D002418 4.0e-07 58.5 98 38.8
Zm00001eb228720 Zea mays HOM05D009296 ORTHO05D010828 4.0e-07 58.5 86 40.7
Cre08.g369150 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D002418 5.2e-07 58.2 122 28.7


User provided reference genes

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