Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0054500 Rhododendron simsii HOM05D000248 ORTHO05D000146 1.0e-122 443.4 214 100.0
Rhsim02G0054800 Rhododendron simsii HOM05D000248 ORTHO05D000146 2.6e-70 269.2 214 69.2
vmacro15516 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 1.7e-16 90.5 146 43.8
CSS0005023 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 2.1e-14 83.6 104 43.3
CSS0035232 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 2.3e-13 80.1 104 40.4
Actinidia11406 Actinidia chinensis HOM05D000248 ORTHO05D000146 3.0e-13 79.7 103 49.5
Actinidia11407 Actinidia chinensis HOM05D000248 ORTHO05D000146 3.0e-13 79.7 105 48.6
Nn3g19935 Nelumbo nucifera HOM05D000248 ORTHO05D000146 2.8e-11 73.2 122 36.1
Rhsim05G0174600 Rhododendron simsii HOM05D000248 ORTHO05D000146 3.6e-11 72.8 100 43.0
GSVIVG01003897001 Vitis vinifera HOM05D000248 ORTHO05D000146 1.4e-10 70.9 105 36.2
TAR365G0663 Trochodendron aralioides HOM05D000248 ORTHO05D000146 2.4e-10 70.1 121 37.2
TAR194G0003 Trochodendron aralioides HOM05D000248 ORTHO05D000146 3.1e-10 69.7 121 37.2
Lj3A568T34 Lonicera japonica HOM05D000248 ORTHO05D000146 4.0e-10 69.3 100 39.0
Lj3C554T0 Lonicera japonica HOM05D000248 ORTHO05D000146 5.2e-10 68.9 103 41.7
Aqoxy2G02884 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 8.9e-10 68.2 106 37.7
Nn1g07798 Nelumbo nucifera HOM05D000248 ORTHO05D000146 8.9e-10 68.2 120 35.8
Dinv05673 Davidia involucrata HOM05D000248 ORTHO05D000146 1.2e-09 67.8 113 35.4
Nn1g07795 Nelumbo nucifera HOM05D000248 ORTHO05D000146 1.5e-09 67.4 113 38.1
Sabra18G0019100 Salix brachista HOM05D000248 ORTHO05D000146 1.5e-09 67.4 114 37.7
Eucgr.H01640 Eucalyptus grandis HOM05D000248 ORTHO05D000146 3.4e-09 66.2 112 33.0
Lj3C552T0 Lonicera japonica HOM05D000248 ORTHO05D000146 3.4e-09 66.2 103 40.8
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 4.4e-09 65.9 102 39.2
TAR636G3681 Trochodendron aralioides HOM05D000248 ORTHO05D000146 4.4e-09 65.9 51 58.8
Potri.018G015800 Populus trichocarpa HOM05D000248 ORTHO05D000146 5.8e-09 65.5 114 35.1
Dinv38257 Davidia involucrata HOM05D000248 ORTHO05D000146 7.6e-09 65.1 94 41.5
PGR119G2108 Punica granatum HOM05D000248 ORTHO05D000146 7.6e-09 65.1 118 34.7
vmacro19995 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 7.6e-09 65.1 107 40.2
Dinv41282 Davidia involucrata HOM05D000248 ORTHO05D000146 1.7e-08 63.9 106 36.8
Lsat_1_v5_gn_2_44460 Lactuca sativa HOM05D000248 ORTHO05D000146 1.7e-08 63.9 71 45.1
Nn3g19936 Nelumbo nucifera HOM05D000248 ORTHO05D000146 1.7e-08 63.9 127 33.1
TAR636G3635 Trochodendron aralioides HOM05D000248 ORTHO05D000146 1.7e-08 63.9 51 58.8
Hma1.2p1_0123F.1_g058070 Hydrangea macrophylla HOM05D000248 ORTHO05D000146 2.2e-08 63.5 116 33.6
Lj3C556G1 Lonicera japonica HOM05D000248 ORTHO05D000146 2.2e-08 63.5 110 36.4
Eucgr.L01379 Eucalyptus grandis HOM05D000248 ORTHO05D000146 2.9e-08 63.2 106 33.0
Lj3A556G9 Lonicera japonica HOM05D000248 ORTHO05D000146 2.9e-08 63.2 81 42.0
vmacro05703 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 2.9e-08 63.2 102 38.2
FAN05G5517 Fragaria x ananassa HOM05D000248 ORTHO05D000146 3.8e-08 62.8 114 34.2
Gohir.A05G389700 Gossypium hirsutum HOM05D000248 ORTHO05D000146 3.8e-08 62.8 105 37.1
Duzib177G0899 Durio zibethinus HOM05D000248 ORTHO05D000146 4.9e-08 62.4 116 34.5
FAN05G5522 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.9e-08 62.4 114 34.2
Oeu001457.1 Olea europaea HOM05D000248 ORTHO05D000146 4.9e-08 62.4 107 36.4
vmacro15737 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 4.9e-08 62.4 100 40.0
FAN02G1553 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.4e-08 62.0 115 33.9
Lj3A569T40 Lonicera japonica HOM05D000248 ORTHO05D000146 6.4e-08 62.0 81 44.4
SGA_v2.0_scaffold81G26078 Striga asiatica HOM05D000248 ORTHO05D000146 8.4e-08 61.6 122 32.0
TAR633G1561 Trochodendron aralioides HOM05D000248 ORTHO05D000146 8.4e-08 61.6 66 47.0
CAN.G694.11 Capsicum annuum HOM05D000248 ORTHO05D000146 1.1e-07 61.2 58 48.3
Medtr1g079130 Medicago truncatula HOM05D000248 ORTHO05D000146 1.1e-07 61.2 114 30.7
TAR636G3458 Trochodendron aralioides HOM05D000248 ORTHO05D000146 1.1e-07 61.2 101 34.7
Lsat_1_v5_gn_8_3281 Lactuca sativa HOM05D000248 ORTHO05D000146 1.4e-07 60.8 115 27.8
Lj3A557T51 Lonicera japonica HOM05D000248 ORTHO05D000146 1.4e-07 60.8 81 43.2
Nitab4.5_0005757g0020 Nicotiana tabacum HOM05D000248 ORTHO05D000146 1.4e-07 60.8 65 44.6
PGSC0003DMG400023354 Solanum tuberosum HOM05D000248 ORTHO05D000146 1.4e-07 60.8 66 45.5
TWI12G0656 Tripterygium wilfordii HOM05D000248 ORTHO05D000146 1.4e-07 60.8 50 54.0
TAR636G2068 Trochodendron aralioides HOM05D000248 ORTHO05D000146 1.4e-07 60.8 100 36.0
vmacro15738 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 1.4e-07 60.8 103 37.9
HPP92_008967 Vanilla planifolia HOM05D000248 ORTHO05D000146 1.4e-07 60.8 47 59.6
BcaC06g31238 Brassica carinata HOM05D000248 ORTHO05D000146 1.9e-07 60.5 103 35.9
Eucgr.H01672 Eucalyptus grandis HOM05D000248 ORTHO05D000146 1.9e-07 60.5 109 33.0
Hma1.2p1_0691F.1_g204080 Hydrangea macrophylla HOM05D000248 ORTHO05D000146 1.9e-07 60.5 94 39.4
Nitab4.5_0001436g0010 Nicotiana tabacum HOM05D000248 ORTHO05D000146 1.9e-07 60.5 61 49.2
Rhsim09G0053400 Rhododendron simsii HOM05D000248 ORTHO05D000146 1.9e-07 60.5 102 39.2
Cfa006293 Carpinus fangiana HOM05D000248 ORTHO05D000146 2.4e-07 60.1 116 31.9
CiPaw.08G159200 Carya illinoinensis HOM05D000248 ORTHO05D000146 2.4e-07 60.1 110 37.3
Dinv06644 Davidia involucrata HOM05D000248 ORTHO05D000146 2.4e-07 60.1 118 34.7
Nn1g07799 Nelumbo nucifera HOM05D000248 ORTHO05D000146 2.4e-07 60.1 50 54.0
TAR365G0442 Trochodendron aralioides HOM05D000248 ORTHO05D000146 2.4e-07 60.1 118 31.4
CiPaw.07G076300 Carya illinoinensis HOM05D000248 ORTHO05D000146 3.2e-07 59.7 115 31.3
HanXRQChr17g0559131 Helianthus annuus HOM05D000248 ORTHO05D000146 3.2e-07 59.7 48 56.2
Oeu027737.1 Olea europaea HOM05D000248 ORTHO05D000146 3.2e-07 59.7 117 32.5
Peaxi162Scf00156g00619 Petunia axillaris HOM05D000248 ORTHO05D000146 3.2e-07 59.7 58 48.3
Sabra06G0209400 Salix brachista HOM05D000248 ORTHO05D000146 3.2e-07 59.7 115 33.9
Sed0021501 Sechium edule HOM05D000248 ORTHO05D000146 3.2e-07 59.7 105 33.3
FvH4_6g01090 Fragaria vesca HOM05D000248 ORTHO05D000146 4.2e-07 59.3 114 31.6
Lj3C568T6 Lonicera japonica HOM05D000248 ORTHO05D000146 4.2e-07 59.3 81 40.7
GSVIVG01003907001 Vitis vinifera HOM05D000248 ORTHO05D000146 4.2e-07 59.3 100 36.0
Aqoxy2G03759 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 5.4e-07 58.9 48 54.2
Thhalv10004545m.g Eutrema salsugineum HOM05D000248 ORTHO05D000146 5.4e-07 58.9 130 31.5
Gohir.A05G389600 Gossypium hirsutum HOM05D000248 ORTHO05D000146 5.4e-07 58.9 101 33.7
Os02g0813350 Oryza sativa ssp. japonica HOM05D000248 ORTHO05D000146 5.4e-07 58.9 49 53.1
Rhsim02G0054900 Rhododendron simsii HOM05D000248 ORTHO05D000146 5.4e-07 58.9 89 41.6
SalBow3G1014 Salvia bowleyana HOM05D000248 ORTHO05D000146 5.4e-07 58.9 115 32.2
Solyc05g055870.3 Solanum lycopersicum HOM05D000248 ORTHO05D000146 5.4e-07 58.9 61 47.5
Sopen05g034270 Solanum pennellii HOM05D000248 ORTHO05D000146 5.4e-07 58.9 61 47.5
CSS0015978 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 7.1e-07 58.5 54 57.4
CSS0018779 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 7.1e-07 58.5 54 57.4
Cc09_g03230 Coffea canephora HOM05D000248 ORTHO05D000146 7.1e-07 58.5 113 32.7
Eucgr.H01358 Eucalyptus grandis HOM05D000248 ORTHO05D000146 7.1e-07 58.5 61 42.6
Eucgr.H02040 Eucalyptus grandis HOM05D000248 ORTHO05D000146 7.1e-07 58.5 109 32.1
Eucgr.L02439 Eucalyptus grandis HOM05D000248 ORTHO05D000146 7.1e-07 58.5 61 42.6
PSO017G0732 Papaver somniferum HOM05D000248 ORTHO05D000146 7.1e-07 58.5 110 33.6
FAN09G1542 Fragaria x ananassa HOM05D000248 ORTHO05D000146 9.3e-07 58.2 114 31.6
Nn3g19934 Nelumbo nucifera HOM05D000248 ORTHO05D000146 9.3e-07 58.2 48 58.3
Psat6g137880 Pisum sativum HOM05D000248 ORTHO05D000146 9.3e-07 58.2 117 31.6
PGSC0003DMG400011993 Solanum tuberosum HOM05D000248 ORTHO05D000146 9.3e-07 58.2 48 56.2
C07p33180 Brassica napus HOM05D000248 ORTHO05D000146 1.2e-06 57.8 103 35.0
BolC7t43830H Brassica oleracea HOM05D000248 ORTHO05D000146 1.2e-06 57.8 103 35.0
CiPaw.07G076200 Carya illinoinensis HOM05D000248 ORTHO05D000146 1.2e-06 57.8 115 33.9
Ca_09974_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 1.2e-06 57.8 118 30.5
Ca_09990_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 1.2e-06 57.8 118 30.5
CsaV3_1G031380 Cucumis sativus L. HOM05D000248 ORTHO05D000146 1.2e-06 57.8 103 35.9
Duzib128G1684 Durio zibethinus HOM05D000248 ORTHO05D000146 1.2e-06 57.8 105 33.3
Eucgr.L01377 Eucalyptus grandis HOM05D000248 ORTHO05D000146 1.2e-06 57.8 103 29.1
Gohir.A05G390200 Gossypium hirsutum HOM05D000248 ORTHO05D000146 1.2e-06 57.8 105 34.3
Gohir.D04G026800 Gossypium hirsutum HOM05D000248 ORTHO05D000146 1.2e-06 57.8 105 34.3
Solyc04g050990.3 Solanum lycopersicum HOM05D000248 ORTHO05D000146 1.2e-06 57.8 48 54.2
Sopen04g022290 Solanum pennellii HOM05D000248 ORTHO05D000146 1.2e-06 57.8 48 54.2
AL5G11500 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 1.6e-06 57.4 48 54.2
Gohir.D04G026900 Gossypium hirsutum HOM05D000248 ORTHO05D000146 1.6e-06 57.4 101 33.7
Lj3A568T35 Lonicera japonica HOM05D000248 ORTHO05D000146 1.6e-06 57.4 98 37.8
PSO675G2500 Papaver somniferum HOM05D000248 ORTHO05D000146 1.6e-06 57.4 109 33.0
RcHm_v2.0_Chr3g0448621 Rosa chinensis HOM05D000248 ORTHO05D000146 1.6e-06 57.4 114 31.6
MSTRG.28003 Avicennia marina HOM05D000248 ORTHO05D000146 2.1e-06 57.0 48 47.9
Cpa.g.sc48.119 Carica papaya HOM05D000248 ORTHO05D000146 2.1e-06 57.0 60 46.7
Cc09_g03240 Coffea canephora HOM05D000248 ORTHO05D000146 2.1e-06 57.0 102 37.3
Lsat_1_v5_gn_2_44281 Lactuca sativa HOM05D000248 ORTHO05D000146 2.1e-06 57.0 73 43.8
Potri.006G267000 Populus trichocarpa HOM05D000248 ORTHO05D000146 2.1e-06 57.0 114 33.3
Prupe.6G356300 Prunus persica HOM05D000248 ORTHO05D000146 2.1e-06 57.0 121 30.6
Rhsim02G0055000 Rhododendron simsii HOM05D000248 ORTHO05D000146 2.1e-06 57.0 89 41.6
TWI59G0331 Tripterygium wilfordii HOM05D000248 ORTHO05D000146 2.1e-06 57.0 114 34.2
CAN.G4.36 Capsicum annuum HOM05D000248 ORTHO05D000146 2.7e-06 56.6 48 52.1
Migut.N03087 Erythranthe guttata HOM05D000248 ORTHO05D000146 2.7e-06 56.6 49 51.0
FAN14G5904 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.7e-06 56.6 114 30.7
Hma1.2p1_0691F.1_g204090 Hydrangea macrophylla HOM05D000248 ORTHO05D000146 2.7e-06 56.6 94 37.2
Lsat_1_v5_gn_2_16121 Lactuca sativa HOM05D000248 ORTHO05D000146 2.7e-06 56.6 114 29.8
Lsat_1_v5_gn_2_44160 Lactuca sativa HOM05D000041 ORTHO05D000452 2.7e-06 56.6 73 43.8
Nitab4.5_0000344g0070 Nicotiana tabacum HOM05D000248 ORTHO05D000146 2.7e-06 56.6 53 49.1
Peaxi162Scf00037g01716 Petunia axillaris HOM05D000248 ORTHO05D000146 2.7e-06 56.6 73 46.6
unitig_0.g2374 Utricularia gibba HOM05D000248 ORTHO05D000146 2.7e-06 56.6 61 44.3
CARHR144950 Cardamine hirsuta HOM05D000248 ORTHO05D000146 3.5e-06 56.2 109 36.7
ECA236G2239 Erigeron canadensis HOM05D000248 ORTHO05D000146 3.5e-06 56.2 48 60.4
Eucgr.H01359 Eucalyptus grandis HOM05D000248 ORTHO05D000146 3.5e-06 56.2 48 50.0
Oeu024178.1 Olea europaea HOM05D000248 ORTHO05D000146 3.5e-06 56.2 50 52.0
Oeu029687.1 Olea europaea HOM05D000248 ORTHO05D000146 3.5e-06 56.2 117 29.9
THA.LOC104805126 Tarenaya hassleriana HOM05D000248 ORTHO05D000146 3.5e-06 56.2 110 36.4
Actinidia11401 Actinidia chinensis HOM05D000248 ORTHO05D000146 4.6e-06 55.8 67 46.3
CAN.G706.7 Capsicum annuum HOM05D000248 ORTHO05D000146 4.6e-06 55.8 93 37.6
Cfa006294 Carpinus fangiana HOM05D000248 ORTHO05D000146 4.6e-06 55.8 108 37.0
Dinv24402 Davidia involucrata HOM05D000248 ORTHO05D000146 4.6e-06 55.8 51 54.9
Duzib106G1323 Durio zibethinus HOM05D000248 ORTHO05D000146 4.6e-06 55.8 107 41.1
Glyma.10G169600 Glycine max HOM05D000248 ORTHO05D000146 4.6e-06 55.8 100 36.0
MBI07_g23670_MAGBIO Magnolia biondii HOM05D000248 ORTHO05D000146 4.6e-06 55.8 89 37.1
Manes.02G171600 Manihot esculenta HOM05D000248 ORTHO05D000146 4.6e-06 55.8 101 33.7
Manes.09G183100 Manihot esculenta HOM05D000248 ORTHO05D000146 4.6e-06 55.8 117 29.9
Oeu044552.1 Olea europaea HOM05D000248 ORTHO05D000146 4.6e-06 55.8 117 29.9
TAR633G1009 Trochodendron aralioides HOM05D000248 ORTHO05D000146 4.6e-06 55.8 60 45.0
Actinidia38904 Actinidia chinensis HOM05D000248 ORTHO05D000146 6.0e-06 55.5 55 47.3
Ciclev10012262m.g Citrus clementina HOM05D000248 ORTHO05D000146 6.0e-06 55.5 113 31.9
Eucgr.L03074 Eucalyptus grandis HOM05D000248 ORTHO05D000146 6.0e-06 55.5 103 30.1
Lsat_1_v5_gn_7_74040 Lactuca sativa HOM05D000248 ORTHO05D000146 6.0e-06 55.5 48 60.4
Oeu011811.1 Olea europaea HOM05D000248 ORTHO05D000146 6.0e-06 55.5 113 33.6
PSO063G6434 Papaver somniferum HOM05D000248 ORTHO05D000146 6.0e-06 55.5 124 33.1
Sp2g13640 Schrenkiella parvula HOM05D000248 ORTHO05D000146 6.0e-06 55.5 101 33.7
SGA_v2.0_scaffold80G25909 Striga asiatica HOM05D000248 ORTHO05D000146 6.0e-06 55.5 53 43.4
BcaC06g31242 Brassica carinata HOM05D000248 ORTHO05D000146 7.8e-06 55.1 117 29.1
Eucgr.H01641 Eucalyptus grandis HOM05D000248 ORTHO05D000146 7.8e-06 55.1 48 50.0
Gorai.012G029600 Gossypium raimondii HOM05D000248 ORTHO05D000146 7.8e-06 55.1 101 32.7
Lsat_1_v5_gn_2_17221 Lactuca sativa HOM05D000248 ORTHO05D000146 7.8e-06 55.1 113 28.3
Lsat_1_v5_gn_7_74080 Lactuca sativa HOM05D000248 ORTHO05D000146 7.8e-06 55.1 50 58.0
Nitab4.5_0003944g0030 Nicotiana tabacum HOM05D000248 ORTHO05D000146 7.8e-06 55.1 48 50.0
PSO017G6036 Papaver somniferum HOM05D000248 ORTHO05D000146 7.8e-06 55.1 124 32.3
Rhsim09G0130700 Rhododendron simsii HOM05D000248 ORTHO05D000146 7.8e-06 55.1 121 30.6


User provided reference genes

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