Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.7e-49 198.4 100 100.0
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.9e-48 194.5 98 98.0
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.7e-43 179.1 93 95.7
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 7.1e-42 173.7 98 86.7
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.4e-26 122.1 70 90.0
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 8.1e-22 107.1 70 74.3
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.8e-21 105.9 70 78.6
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 5.3e-21 104.4 70 70.0
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.2e-20 103.2 70 71.4
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.0e-20 102.4 70 70.0
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 2.0e-20 102.4 70 71.4
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.0e-20 102.4 70 72.9
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 2.6e-20 102.1 70 74.3
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 2.6e-20 102.1 70 75.7
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 3.4e-20 101.7 70 70.0
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 4.5e-20 101.3 70 67.1
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 5.8e-20 100.9 70 71.4
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 5.8e-20 100.9 70 72.9
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 9.9e-20 100.1 70 68.6
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 9.9e-20 100.1 70 72.9
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.3e-19 99.8 70 68.6
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 1.3e-19 99.8 70 70.0
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.7e-19 99.4 70 72.9
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.7e-19 99.4 70 71.4
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 1.7e-19 99.4 70 72.9
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.7e-19 99.4 70 68.6
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.2e-19 99.0 70 70.0
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.2e-19 99.0 89 57.3
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 2.9e-19 98.6 70 70.0
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 2.9e-19 98.6 70 68.6
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.9e-19 98.6 70 67.1
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.9e-19 98.6 70 67.1
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 3.8e-19 98.2 70 70.0
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 4.9e-19 97.8 70 65.7
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 4.9e-19 97.8 70 68.6
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 8.4e-19 97.1 70 64.3
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 8.4e-19 97.1 70 68.6
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.1e-18 96.7 70 68.6
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.1e-18 96.7 70 68.6
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.1e-18 96.7 70 68.6
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.4e-18 96.3 70 67.1
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 2.4e-18 95.5 70 65.7
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.4e-18 95.5 70 67.1
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 3.2e-18 95.1 70 65.7
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 3.2e-18 95.1 70 65.7
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 3.2e-18 95.1 70 64.3
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 4.2e-18 94.7 70 67.1
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 5.4e-18 94.4 70 65.7
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.1e-18 94.0 70 65.7
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.1e-18 94.0 70 64.3
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.1e-18 94.0 70 64.3
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 9.3e-18 93.6 70 67.1
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 9.3e-18 93.6 70 62.9
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 9.3e-18 93.6 70 64.3
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 1.2e-17 93.2 70 65.7
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 1.2e-17 93.2 70 65.7
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 1.6e-17 92.8 70 64.3
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 1.6e-17 92.8 70 64.3
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.6e-17 92.8 73 65.8
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 2.1e-17 92.4 70 62.9
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 3.5e-17 91.7 70 62.9
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 3.5e-17 91.7 70 64.3
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 3.5e-17 91.7 70 65.7
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 3.5e-17 91.7 70 62.9
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 4.6e-17 91.3 70 65.7
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 4.6e-17 91.3 70 61.4
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 6.0e-17 90.9 70 60.0
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 7.9e-17 90.5 70 65.7
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 1.0e-16 90.1 70 60.0
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 1.0e-16 90.1 70 65.7
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.0e-16 90.1 70 64.3
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 1.0e-16 90.1 70 62.9
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 1.3e-16 89.7 70 61.4
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 1.3e-16 89.7 70 62.9
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 1.8e-16 89.4 70 60.0
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 1.8e-16 89.4 70 62.9
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.8e-16 89.4 70 62.9
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 1.8e-16 89.4 70 62.9
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.8e-16 89.4 70 62.9
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.3e-16 89.0 70 62.9
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 2.3e-16 89.0 70 61.4
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.3e-16 89.0 70 64.3
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 2.3e-16 89.0 70 60.0
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 2.3e-16 89.0 70 60.0
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 3.0e-16 88.6 70 61.4
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 3.0e-16 88.6 70 60.0
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 3.0e-16 88.6 70 62.9
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 3.9e-16 88.2 70 61.4
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 3.9e-16 88.2 70 61.4
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 5.1e-16 87.8 70 60.0
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 5.1e-16 87.8 70 64.3
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 6.7e-16 87.4 70 61.4
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 6.7e-16 87.4 70 60.0
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 6.7e-16 87.4 70 65.7
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 6.7e-16 87.4 70 58.6
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 1.1e-15 86.7 70 60.0
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.5e-15 86.3 70 62.9
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 2.5e-15 85.5 70 58.6
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.5e-15 85.5 70 58.6
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 2.5e-15 85.5 70 57.1
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 3.3e-15 85.1 70 61.4
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 4.3e-15 84.7 70 60.0
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 5.6e-15 84.3 89 47.2
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 57.1
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 60.0
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.6e-14 82.8 70 58.6
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.6e-14 82.8 70 58.6
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 1.6e-14 82.8 70 60.0
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.6e-14 82.8 70 55.7
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 60.0
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 2.8e-14 82.0 70 55.7
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 2.8e-14 82.0 70 55.7
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 2.8e-14 82.0 70 55.7
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 2.8e-14 82.0 70 55.7
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 2.8e-14 82.0 70 55.7
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.7e-14 81.6 70 55.7
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 3.7e-14 81.6 70 55.7
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 57.1
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 55.7
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 8.1e-14 80.5 70 55.7
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 8.1e-14 80.5 73 53.4
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 8.1e-14 80.5 70 54.3
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.1e-13 80.1 70 52.9
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.1e-13 80.1 70 60.0
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 1.8e-13 79.3 70 54.3
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 2.4e-13 79.0 70 51.4
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 2.4e-13 79.0 70 54.3
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 4.0e-13 78.2 70 54.3
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 4.0e-13 78.2 70 54.3
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 4.0e-13 78.2 70 51.4
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 4.0e-13 78.2 73 52.1
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 1.2e-12 76.6 70 54.3
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 1.5e-12 76.3 70 55.7
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 2.0e-12 75.9 70 51.4
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 3.4e-12 75.1 70 54.3
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 4.5e-12 74.7 70 50.0
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.8e-12 74.3 73 49.3
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.7e-11 72.8 52 71.2
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.2e-11 72.4 73 47.9
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 2.9e-11 72.0 73 47.9
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 2.9e-11 72.0 70 55.7
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 8.4e-11 70.5 70 47.1
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 3.2e-10 68.6 70 45.7
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 4.2e-10 68.2 70 51.4
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.1e-09 65.9 70 45.7
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 4.6e-09 64.7 53 60.4
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 3.9e-08 61.6 71 47.9
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.7e-08 60.8 41 75.6
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 1.5e-07 59.7 55 52.7
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.3e-06 56.6 43 60.5
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 8.2e-06 53.9 70 37.1


User provided reference genes

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