Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 3.3e-147 525.0 261 100.0
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 1.3e-47 194.1 147 76.2
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 1.8e-44 183.7 121 77.7
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.0e-43 180.3 121 76.9
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 6.3e-42 175.3 121 73.6
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 3.5e-40 169.5 121 73.6
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 3.0e-36 156.4 121 63.6
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 2.7e-32 143.3 117 61.5
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 3.0e-31 139.8 121 61.2
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 4.3e-30 136.0 122 60.7
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.2e-29 134.4 126 59.5
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 2.1e-29 133.7 122 60.7
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 4.7e-29 132.5 120 58.3
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 6.2e-29 132.1 122 57.4
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.0e-28 131.3 121 58.7
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.4e-28 131.0 117 59.0
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 1.8e-28 130.6 123 57.7
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 2.3e-28 130.2 121 58.7
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 4.0e-28 129.4 121 59.5
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 4.0e-28 129.4 118 57.6
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.5e-27 127.5 119 55.5
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 1.5e-27 127.5 115 55.7
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 2.6e-27 126.7 118 59.3
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 7.5e-27 125.2 121 55.4
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 7.5e-27 125.2 118 58.5
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.3e-26 124.4 125 56.8
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 1.3e-26 124.4 120 54.2
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 1.7e-26 124.0 119 55.5
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 1.7e-26 124.0 119 53.8
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 8.3e-26 121.7 122 54.9
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.4e-25 120.9 122 54.1
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 1.9e-25 120.6 122 54.1
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 2.4e-25 120.2 123 53.7
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 2.4e-25 120.2 119 53.8
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 2.4e-25 120.2 119 52.1
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 4.1e-25 119.4 122 54.1
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 5.4e-25 119.0 124 53.2
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 5.4e-25 119.0 121 53.7
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.4e-25 119.0 122 53.3
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 5.4e-25 119.0 119 53.8
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 7.0e-25 118.6 122 53.3
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 7.0e-25 118.6 123 56.9
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 1.2e-24 117.9 123 53.7
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 1.6e-24 117.5 119 52.9
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 2.0e-24 117.1 119 55.5
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 2.7e-24 116.7 122 52.5
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 2.7e-24 116.7 122 53.3
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 4.6e-24 115.9 124 54.0
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 6.0e-24 115.5 123 54.5
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 7.8e-24 115.2 121 55.4
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 1.3e-23 114.4 123 52.0
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.7e-23 114.0 122 51.6
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 3.0e-23 113.2 121 52.9
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 3.0e-23 113.2 122 55.7
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 5.0e-23 112.5 123 50.4
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 6.6e-23 112.1 123 51.2
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 8.6e-23 111.7 122 54.1
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 1.9e-22 110.5 110 54.5
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 1.9e-22 110.5 121 52.1
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 3.3e-22 109.8 121 51.2
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 8.1e-21 105.1 144 45.1
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 1.1e-20 104.8 116 51.7
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.4e-20 104.4 117 48.7
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.8e-20 104.0 144 44.4
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 1.8e-20 104.0 126 50.8
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 1.8e-20 104.0 114 49.1
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 2.3e-20 103.6 118 48.3
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 2.3e-20 103.6 121 47.9
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 4.0e-20 102.8 126 51.6
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 4.0e-20 102.8 120 48.3
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 4.0e-20 102.8 121 47.9
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 8.9e-20 101.7 120 50.0
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 1.5e-19 100.9 120 49.2
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 1.5e-19 100.9 133 48.1
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 2.0e-19 100.5 114 50.0
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 2.0e-19 100.5 118 50.0
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 2.0e-19 100.5 123 47.2
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 3.4e-19 99.8 118 50.8
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 3.4e-19 99.8 121 47.9
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 4.4e-19 99.4 116 50.9
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 4.4e-19 99.4 116 50.0
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 1.7e-18 97.4 118 49.2
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 2.9e-18 96.7 121 43.8
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 2.4e-17 93.6 118 46.6
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 9.2e-17 91.7 128 43.8
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 2.7e-16 90.1 68 64.7
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 3.5e-16 89.7 71 60.6
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 1.0e-15 88.2 122 42.6
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 1.3e-15 87.8 116 45.7
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.3e-15 87.0 67 64.2
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 3.0e-15 86.7 76 59.2
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 8.6e-15 85.1 94 51.1
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 1.1e-14 84.7 124 45.2
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 1.5e-14 84.3 92 54.3
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 3.3e-14 83.2 112 45.5
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 4.3e-14 82.8 108 45.4
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 9.5e-14 81.6 66 60.6
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 6.2e-13 79.0 109 46.8
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 8.1e-13 78.6 120 42.5
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 8.1e-13 78.6 119 41.2
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 8.1e-13 78.6 119 41.2
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 1.1e-12 78.2 120 42.5
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 8.9e-12 75.1 138 38.4
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 8.9e-12 75.1 72 52.8
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 1.5e-11 74.3 113 41.6
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 1.5e-11 74.3 69 52.2
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 2.0e-11 73.9 119 40.3
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 7.6e-11 72.0 80 48.8
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 1.3e-10 71.2 54 64.8
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.7e-10 70.9 142 38.7
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 8.4e-10 68.6 102 44.1
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.4e-09 67.0 54 61.1
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 2.4e-09 67.0 71 50.7
QL06p021608 Quercus lobata HOM05D006603 ORTHO05D007786 3.0e-07 60.1 53 58.5
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 5.1e-07 59.3 92 41.3
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 8.6e-07 58.5 83 43.4
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 1.1e-06 58.2 60 53.3
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 4.3e-06 56.2 61 54.1
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 7.3e-06 55.5 121 31.4


User provided reference genes

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