Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0047000 Rhododendron simsii HOM05D002652 ORTHO05D002739 9.8e-55 216.5 103 100.0
Rhsim02G0044600 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.9e-18 95.9 93 54.8
RhsimUnG0058100 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.8e-16 89.4 91 44.0
RhsimUnG0058300 Rhododendron simsii HOM05D002652 ORTHO05D002739 9.9e-15 83.6 77 50.6
Rhsim02G0046900 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.2e-14 82.4 87 43.7
FAN12G4037 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.8e-14 81.6 96 41.7
Prupe.1G050100 Prunus persica HOM05D002652 ORTHO05D002739 3.8e-14 81.6 85 43.5
GSVIVG01027929001 Vitis vinifera HOM05D002652 ORTHO05D002739 8.4e-14 80.5 84 46.4
FvH4_4g04990 Fragaria vesca HOM05D002652 ORTHO05D002739 1.9e-13 79.3 100 41.0
RcHm_v2.0_Chr4g0395751 Rosa chinensis HOM05D002652 ORTHO05D002739 1.9e-13 79.3 85 44.7
Aa31LG7G1660 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.4e-13 79.0 84 45.2
Aa31LG7G1670 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.4e-13 79.0 84 45.2
Carub.0007s2911 Capsella rubella HOM05D002652 ORTHO05D002739 1.6e-12 76.3 93 45.2
Oeu059391.1 Olea europaea HOM05D002652 ORTHO05D002739 1.6e-12 76.3 94 40.4
CARHR219080 Cardamine hirsuta HOM05D002652 ORTHO05D002739 2.1e-12 75.9 94 43.6
PGR044G1935 Punica granatum HOM05D002652 ORTHO05D002739 2.7e-12 75.5 89 40.4
PGR044G0093 Punica granatum HOM05D002652 ORTHO05D002739 3.5e-12 75.1 89 41.6
COL.COLO4_15901 Corchorus olitorius HOM05D002652 ORTHO05D002739 6.0e-12 74.3 85 38.8
Nn1g00661 Nelumbo nucifera HOM05D002652 ORTHO05D002739 6.0e-12 74.3 94 40.4
Aa31LG9G4240 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.0e-11 73.6 84 46.4
Prupe.6G152600 Prunus persica HOM05D002652 ORTHO05D002739 1.0e-11 73.6 84 44.0
vmacro15483 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 1.0e-11 73.6 82 40.2
A09p20860 Brassica napus HOM05D002652 ORTHO05D002739 1.3e-11 73.2 92 43.5
BraA09t37688Z Brassica rapa HOM05D002652 ORTHO05D002739 1.3e-11 73.2 92 43.5
Cfa014794 Carpinus fangiana HOM05D002652 ORTHO05D002739 1.3e-11 73.2 91 40.7
TAR365G0384 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.3e-11 73.2 92 42.4
COL.COLO4_15898 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.0e-11 72.0 83 42.2
RcHm_v2.0_Chr5g0024661 Rosa chinensis HOM05D002652 ORTHO05D002739 3.0e-11 72.0 82 45.1
Aa31LG7G1800 Aethionema arabicum HOM05D002652 ORTHO05D002739 3.9e-11 71.6 93 43.0
RcHm_v2.0_Chr4g0395571 Rosa chinensis HOM05D002652 ORTHO05D002739 3.9e-11 71.6 85 41.2
Sabra19G0035200 Salix brachista HOM05D002652 ORTHO05D002739 3.9e-11 71.6 97 39.2
Sabra19G0035400 Salix brachista HOM05D002652 ORTHO05D002739 3.9e-11 71.6 97 39.2
FvH4_4g04980 Fragaria vesca HOM05D002652 ORTHO05D002739 5.1e-11 71.2 88 39.8
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 5.1e-11 71.2 88 39.8
TAR174G0001 Trochodendron aralioides HOM05D002652 ORTHO05D002739 5.1e-11 71.2 92 41.3
Aa31LG7G1750 Aethionema arabicum HOM05D002652 ORTHO05D002739 6.6e-11 70.9 79 49.4
FvH4_3g15020 Fragaria vesca HOM05D002652 ORTHO05D002739 6.6e-11 70.9 82 43.9
BcaC04g21865 Brassica carinata HOM05D002652 ORTHO05D002739 8.7e-11 70.5 92 43.5
C09p26400 Brassica napus HOM05D002652 ORTHO05D002739 8.7e-11 70.5 92 43.5
BolC9t55542H Brassica oleracea HOM05D002652 ORTHO05D002739 8.7e-11 70.5 92 43.5
Cpa.g.sc59.9 Carica papaya HOM05D002652 ORTHO05D002739 8.7e-11 70.5 93 38.7
Migut.N00884 Erythranthe guttata HOM05D002652 ORTHO05D002739 8.7e-11 70.5 101 39.6
FAN17G3082 Fragaria x ananassa HOM05D002652 ORTHO05D002739 8.7e-11 70.5 86 39.5
QL06p021327 Quercus lobata HOM05D002652 ORTHO05D002739 8.7e-11 70.5 98 38.8
QL08p018841 Quercus lobata HOM05D002652 ORTHO05D002739 8.7e-11 70.5 98 38.8
Sabra19G0038500 Salix brachista HOM05D002652 ORTHO05D002739 8.7e-11 70.5 101 40.6
BcaB07g30971 Brassica carinata HOM05D002652 ORTHO05D002739 1.1e-10 70.1 92 43.5
Rhsim02G0047200 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.1e-10 70.1 86 41.9
Sabra19G0038900 Salix brachista HOM05D002652 ORTHO05D002739 1.1e-10 70.1 100 35.0
FAN12G2993 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.5e-10 69.7 101 35.6
Potri.019G026820 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.5e-10 69.7 97 38.1
Aqoxy7G00431 Aquilegia oxysepala HOM05D002652 ORTHO05D002739 1.9e-10 69.3 83 39.8
MSTRG.4179 Avicennia marina HOM05D002652 ORTHO05D002739 1.9e-10 69.3 86 38.4
Cpa.g.sc8968.1 Carica papaya HOM05D002652 ORTHO05D002739 1.9e-10 69.3 91 39.6
Sabra19G0038800 Salix brachista HOM05D002652 ORTHO05D002739 1.9e-10 69.3 101 40.6
vmacro15484 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 1.9e-10 69.3 87 37.9
FvH4_4g04740 Fragaria vesca HOM05D002652 ORTHO05D002739 2.5e-10 68.9 104 35.6
Potri.019G027440 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.5e-10 68.9 97 36.1
QL06p021274 Quercus lobata HOM05D002652 ORTHO05D002739 2.5e-10 68.9 94 36.2
THA.LOC104821630 Tarenaya hassleriana HOM05D002652 ORTHO05D002739 2.5e-10 68.9 84 41.7
Potri.019G026780 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.3e-10 68.6 97 37.1
Potri.019G026900 Populus trichocarpa HOM05D002652 ORTHO05D002739 4.3e-10 68.2 93 36.6
Potri.019G027100 Populus trichocarpa HOM05D002652 ORTHO05D002739 4.3e-10 68.2 93 36.6
COL.COLO4_15900 Corchorus olitorius HOM05D002652 ORTHO05D002739 5.6e-10 67.8 82 40.2
FAN10G1323 Fragaria x ananassa HOM05D002652 ORTHO05D002739 5.6e-10 67.8 101 35.6
FAN10G2095 Fragaria x ananassa HOM05D002652 ORTHO05D002739 5.6e-10 67.8 101 35.6
Prupe.1G050000 Prunus persica HOM05D002652 ORTHO05D002739 5.6e-10 67.8 86 37.2
Rhsim02G0044400 Rhododendron simsii HOM05D002652 ORTHO05D002739 5.6e-10 67.8 75 44.0
Rhsim02G0046500 Rhododendron simsii HOM05D002652 ORTHO05D002739 5.6e-10 67.8 75 44.0
Ciclev10006564m.g Citrus clementina HOM05D002652 ORTHO05D002739 7.3e-10 67.4 85 41.2
Potri.019G026860 Populus trichocarpa HOM05D002652 ORTHO05D002739 7.3e-10 67.4 95 36.8
Sabra19G0039000 Salix brachista HOM05D002652 ORTHO05D002739 7.3e-10 67.4 97 37.1
Hma1.2p1_0042F.1_g025730 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 9.6e-10 67.0 84 40.5
DCAR_002581 Daucus carota HOM05D002652 ORTHO05D002739 1.3e-09 66.6 84 39.3
Migut.N00889 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.3e-09 66.6 81 43.2
Sabra19G0038300 Salix brachista HOM05D002652 ORTHO05D002739 1.3e-09 66.6 101 39.6
Potri.019G028800 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.6e-09 66.2 93 35.5
Aa31LG9G4330 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.1e-09 65.9 92 42.4
Ciclev10005927m.g Citrus clementina HOM05D002652 ORTHO05D002739 2.1e-09 65.9 85 37.6
Haze_11472 Corylus avellana HOM05D002652 ORTHO05D002739 2.1e-09 65.9 102 38.2
Potri.019G027200 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.1e-09 65.9 84 36.9
Potri.019G029000 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.1e-09 65.9 86 39.5
Sabra19G0038700 Salix brachista HOM05D002652 ORTHO05D002739 2.1e-09 65.9 101 38.6
Aa31LG9G4210 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.8e-09 65.5 90 37.8
Nn1g00655 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.8e-09 65.5 85 42.4
Potri.019G029100 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.8e-09 65.5 91 39.6
Nn1g00658 Nelumbo nucifera HOM05D002652 ORTHO05D002739 3.6e-09 65.1 85 42.4
Ciclev10007025m.g Citrus clementina HOM05D002652 ORTHO05D002739 4.8e-09 64.7 79 43.0
COL.COLO4_15902 Corchorus olitorius HOM05D002652 ORTHO05D002739 4.8e-09 64.7 85 32.9
COL.COLO4_15907 Corchorus olitorius HOM05D002652 ORTHO05D002739 4.8e-09 64.7 85 32.9
Oeu020135.1 Olea europaea HOM05D002652 ORTHO05D002739 4.8e-09 64.7 84 40.5
Rhsim02G0044300 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.8e-09 64.7 77 42.9
Sabra11G0121600 Salix brachista HOM05D002652 ORTHO05D002739 4.8e-09 64.7 97 38.1
Aa31LG7G1790 Aethionema arabicum HOM05D002652 ORTHO05D002739 6.2e-09 64.3 93 39.8
Hma1.2p1_0385F.1_g141620 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 6.2e-09 64.3 78 42.3
MD05G1228500 Malus domestica HOM05D002652 ORTHO05D002739 6.2e-09 64.3 83 41.0
Prupe.7G106800 Prunus persica HOM05D002652 ORTHO05D002739 6.2e-09 64.3 86 36.0
Sabra19G0035700 Salix brachista HOM05D002652 ORTHO05D002739 6.2e-09 64.3 95 37.9
Nn1g00660 Nelumbo nucifera HOM05D002652 ORTHO05D002739 8.1e-09 63.9 85 40.0
COL.COLO4_15909 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.1e-08 63.5 82 35.4
Actinidia39935 Actinidia chinensis HOM05D002652 ORTHO05D002739 1.4e-08 63.2 84 38.1
FAN25G0267 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.4e-08 63.2 82 41.5
Oeu061866.1 Olea europaea HOM05D002652 ORTHO05D002739 1.4e-08 63.2 84 39.3
Migut.N00305 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.8e-08 62.8 83 39.8
Migut.N00886 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.8e-08 62.8 80 40.0
Actinidia11376 Actinidia chinensis HOM05D002652 ORTHO05D002739 2.4e-08 62.4 92 33.7
Haze_25448 Corylus avellana HOM05D002652 ORTHO05D002739 2.4e-08 62.4 84 39.3
Rhsim02G0046300 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.4e-08 62.4 75 42.7
FvH4_4g04860 Fragaria vesca HOM05D002652 ORTHO05D002739 3.1e-08 62.0 96 34.4
CiPaw.02G106000 Carya illinoinensis HOM05D002652 ORTHO05D002739 4.0e-08 61.6 83 38.6
COL.COLO4_15908 Corchorus olitorius HOM05D002652 ORTHO05D002739 4.0e-08 61.6 79 35.4
Migut.N00315 Erythranthe guttata HOM05D002652 ORTHO05D002739 4.0e-08 61.6 92 34.8
RcHm_v2.0_Chr4g0395461 Rosa chinensis HOM05D002652 ORTHO05D002739 5.3e-08 61.2 92 32.6
Atru.chr4.1903 Acer truncatum HOM05D002652 ORTHO05D002739 6.9e-08 60.8 92 33.7
ECA247G3161 Erigeron canadensis HOM05D002652 ORTHO05D002739 6.9e-08 60.8 92 34.8
DCAR_002582 Daucus carota HOM05D002652 ORTHO05D002739 9.0e-08 60.5 95 37.9
Lsat_1_v5_gn_2_104120 Lactuca sativa HOM05D002652 ORTHO05D002739 9.0e-08 60.5 84 33.3
TAR636G1048 Trochodendron aralioides HOM05D002652 ORTHO05D002739 9.0e-08 60.5 97 35.1
Migut.N00883 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.2e-07 60.1 79 38.0
RcHm_v2.0_Chr4g0395741 Rosa chinensis HOM05D002652 ORTHO05D002739 1.2e-07 60.1 91 33.0
Aa31LG9G4200 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.5e-07 59.7 91 38.5
Potri.019G027000 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.5e-07 59.7 93 34.4
Potri.T121000 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.5e-07 59.7 84 34.5
Sabra19G0038400 Salix brachista HOM05D002652 ORTHO05D002739 1.5e-07 59.7 98 33.7
TAR636G2313 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.5e-07 59.7 82 40.2
Rhsim02G0045000 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.0e-07 59.3 75 40.0
Migut.N00887 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.6e-07 58.9 80 43.8
HanXRQChr07g0194071 Helianthus annuus HOM05D002652 ORTHO05D002739 2.6e-07 58.9 84 35.7
Nn1g08811 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.6e-07 58.9 92 38.0
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.6e-07 58.9 87 35.6
Haze_11422 Corylus avellana HOM05D001324 ORTHO05D001220 3.4e-07 58.5 82 36.6
Potri.019G026740 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.4e-07 58.5 97 34.0
Rhsim02G0044800 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.4e-07 58.5 69 42.0
Sabra19G0035300 Salix brachista HOM05D002652 ORTHO05D002739 3.4e-07 58.5 96 35.4
Actinidia39934 Actinidia chinensis HOM05D002652 ORTHO05D002739 4.5e-07 58.2 84 31.0
ECA238G3361 Erigeron canadensis HOM05D000095 ORTHO05D002739 4.5e-07 58.2 92 33.7
RhsimUnG0101000 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.5e-07 58.2 69 40.6
SalBow3G3644 Salvia bowleyana HOM05D002652 ORTHO05D002739 4.5e-07 58.2 92 33.7
Potri.T121200 Populus trichocarpa HOM05D002652 ORTHO05D002739 5.8e-07 57.8 84 33.3
Potri.T121301 Populus trichocarpa HOM05D002652 ORTHO05D002739 5.8e-07 57.8 84 33.3
CiPaw.01G177100 Carya illinoinensis HOM05D002652 ORTHO05D002739 7.6e-07 57.4 48 56.2
Rhsim02G0047400 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.6e-07 57.4 78 38.5
Actinidia11377 Actinidia chinensis HOM05D002652 ORTHO05D002739 9.9e-07 57.0 94 28.7
AL9U10120 Arabidopsis lyrata HOM05D002652 ORTHO05D002739 9.9e-07 57.0 93 35.5
MSTRG.4181 Avicennia marina HOM05D002652 ORTHO05D002739 9.9e-07 57.0 83 36.1
SalBow2G2144 Salvia bowleyana HOM05D000062 ORTHO05D000043 9.9e-07 57.0 93 30.1
Dinv29797 Davidia involucrata HOM05D002652 ORTHO05D002739 1.3e-06 56.6 85 32.9
Nn1g09048 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.3e-06 56.6 88 35.2
TAR636G3443 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.3e-06 56.6 91 34.1
DCAR_030377 Daucus carota HOM05D002652 ORTHO05D002739 1.7e-06 56.2 75 42.7
GSVIVG01027930001 Vitis vinifera HOM05D002652 ORTHO05D002739 1.7e-06 56.2 92 40.2
MSTRG.4180 Avicennia marina HOM05D002652 ORTHO05D002739 2.2e-06 55.8 83 34.9
DCAR_030375 Daucus carota HOM05D002652 ORTHO05D002739 2.2e-06 55.8 75 42.7
AT4G13440 Arabidopsis thaliana HOM05D002652 ORTHO05D002739 2.9e-06 55.5 93 34.4
RhsimUnG0195300 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.8e-06 55.1 78 38.5
TAR636G0960 Trochodendron aralioides HOM05D002652 ORTHO05D002739 3.8e-06 55.1 51 52.9
DCAR_030376 Daucus carota HOM05D002652 ORTHO05D002739 4.9e-06 54.7 77 39.0
Duzib151G0030 Durio zibethinus HOM05D002652 ORTHO05D002739 4.9e-06 54.7 84 33.3
FvH4_4g04760 Fragaria vesca HOM05D002652 ORTHO05D045822 4.9e-06 54.7 98 30.6
Nn1g00657 Nelumbo nucifera HOM05D002652 ORTHO05D002739 6.4e-06 54.3 84 38.1
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 8.4e-06 53.9 88 33.0
Rhsim02G0046000 Rhododendron simsii HOM05D002652 ORTHO05D002739 8.4e-06 53.9 78 34.6
RcHm_v2.0_Chr4g0395801 Rosa chinensis HOM05D002652 ORTHO05D002739 8.4e-06 53.9 88 33.0
Sabra19G0035100 Salix brachista HOM05D002652 ORTHO05D002739 8.4e-06 53.9 95 33.7
Sabra19G0035500 Salix brachista HOM05D002652 ORTHO05D002739 8.4e-06 53.9 95 33.7


User provided reference genes

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