Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0039000 Rhododendron simsii HOM05D006760 ORTHO05D008121 5.9e-89 330.9 172 100.0
Rhsim02G0038400 Rhododendron simsii HOM05D006760 ORTHO05D008121 2.2e-75 285.8 173 87.3
Rhsim03G0260800 Rhododendron simsii HOM05D006760 ORTHO05D008121 1.6e-49 199.9 150 72.7
Rhsim11G0034300 Rhododendron simsii HOM05D006760 ORTHO05D008121 1.6e-46 189.9 175 62.9
Actinidia32779 Actinidia chinensis HOM05D006760 ORTHO05D008121 2.4e-29 132.9 160 50.6
CSS0002453 Camellia sinensis var. sinensis HOM05D006760 ORTHO05D008121 3.1e-29 132.5 154 53.2
CSS0041869 Camellia sinensis var. sinensis HOM05D006760 ORTHO05D008121 1.5e-28 130.2 154 52.6
Actinidia01259 Actinidia chinensis HOM05D006760 ORTHO05D008121 4.6e-25 118.6 162 47.5
Dinv37413 Davidia involucrata HOM05D006760 ORTHO05D008121 1.8e-24 116.7 137 53.3
CAN.G800.11 Capsicum annuum HOM05D006760 ORTHO05D008121 9.7e-23 110.9 142 46.5
Nitab4.5_0000030g0230 Nicotiana tabacum HOM05D006760 ORTHO05D008121 9.7e-23 110.9 152 46.1
Nitab4.5_0001023g0160 Nicotiana tabacum HOM05D006760 ORTHO05D008121 9.7e-23 110.9 152 46.1
PGSC0003DMG400030849 Solanum tuberosum HOM05D006760 ORTHO05D008121 8.2e-22 107.8 152 44.7
vmacro00052 Vaccinium macrocarpon HOM05D006760 ORTHO05D008121 1.1e-21 107.5 82 68.3
Solyc08g075680.4 Solanum lycopersicum HOM05D006760 ORTHO05D008121 1.8e-21 106.7 152 44.7
Sopen08g024330 Solanum pennellii HOM05D006760 ORTHO05D008121 1.8e-21 106.7 152 44.7
Cc00_g07450 Coffea canephora HOM05D006760 ORTHO05D008121 9.1e-21 104.4 145 43.4
TAR629G0494 Trochodendron aralioides HOM05D006760 ORTHO05D008121 2.0e-20 103.2 152 45.4
Glyma.09G214700 Glycine max HOM05D006760 ORTHO05D008121 1.0e-19 100.9 121 50.4
Oeu046799.1 Olea europaea HOM05D006760 ORTHO05D008121 1.0e-19 100.9 134 48.5
MSTRG.1766 Avicennia marina HOM05D006760 ORTHO05D008121 1.7e-19 100.1 130 46.9
Atru.chr6.2107 Acer truncatum HOM05D006760 ORTHO05D008121 2.9e-19 99.4 121 51.2
Glyma.04G123100 Glycine max HOM05D006760 ORTHO05D008121 2.9e-19 99.4 138 46.4
Potri.001G130100 Populus trichocarpa HOM05D006760 ORTHO05D008121 2.9e-19 99.4 166 41.0
Hma1.2p1_1873F.1_g306180 Hydrangea macrophylla HOM05D006760 ORTHO05D008121 5.0e-19 98.6 152 46.1
Lj8C333T3 Lonicera japonica HOM05D006760 ORTHO05D008121 5.0e-19 98.6 144 46.5
MSTRG.13908 Avicennia marina HOM05D006760 ORTHO05D008121 8.5e-19 97.8 117 49.6
Sabra01G0100600 Salix brachista HOM05D006760 ORTHO05D008121 8.5e-19 97.8 115 46.1
SGA_v2.0_scaffold111G31361 Striga asiatica HOM05D006760 ORTHO05D008121 1.4e-18 97.1 147 43.5
Ciclev10001352m.g Citrus clementina HOM05D006760 ORTHO05D008121 1.9e-18 96.7 119 50.4
DCAR_006312 Daucus carota HOM05D006760 ORTHO05D008121 1.9e-18 96.7 153 41.2
Dinv41816 Davidia involucrata HOM05D006760 ORTHO05D008121 1.9e-18 96.7 75 66.7
VMungo1215G0713 Vigna mungo HOM05D006760 ORTHO05D008121 1.9e-18 96.7 102 53.9
Sc22g0002140 Simmondsia chinensis HOM05D006760 ORTHO05D008121 3.2e-18 95.9 149 44.3
Cfa012614 Carpinus fangiana HOM05D006760 ORTHO05D008121 7.2e-18 94.7 157 42.7
CiPaw.11G103800 Carya illinoinensis HOM05D006760 ORTHO05D008121 9.4e-18 94.4 131 48.9
Peaxi162Scf00193g00023 Petunia axillaris HOM05D006760 ORTHO05D008121 9.4e-18 94.4 179 39.1
Duzib205G0742 Durio zibethinus HOM05D006760 ORTHO05D008121 1.2e-17 94.0 134 46.3
Migut.E01355 Erythranthe guttata HOM05D006760 ORTHO05D008121 2.1e-17 93.2 151 43.7
arahy.Tifrunner.gnm1.ann1.WT3CQ0 Arachis hypogaea HOM05D006760 ORTHO05D008121 3.6e-17 92.4 134 48.5
arahy.Tifrunner.gnm1.ann1.Z5DNFJ Arachis hypogaea HOM05D006760 ORTHO05D008121 3.6e-17 92.4 134 48.5
Thecc.03G324900 Theobroma cacao HOM05D006760 ORTHO05D008121 4.7e-17 92.0 95 53.7
Haze_08051 Corylus avellana HOM05D006760 ORTHO05D008121 6.1e-17 91.7 157 43.3
Nn1g02052 Nelumbo nucifera HOM05D006760 ORTHO05D008121 6.1e-17 91.7 125 45.6
Haze_08041 Corylus avellana HOM05D006760 ORTHO05D008121 7.9e-17 91.3 157 43.3
Lalb_Chr05g0229401 Lupinus albus HOM05D006760 ORTHO05D008121 7.9e-17 91.3 143 42.7
Phvul.002G127600 Phaseolus vulgaris HOM05D006760 ORTHO05D008121 1.4e-16 90.5 102 52.9
Lj2g0001135 Lotus japonicus HOM05D006760 ORTHO05D008121 1.8e-16 90.1 102 51.0
GSVIVG01022805001 Vitis vinifera HOM05D006760 ORTHO05D008121 2.3e-16 89.7 75 60.0
COL.COLO4_37233 Corchorus olitorius HOM05D006760 ORTHO05D008121 3.0e-16 89.4 60 70.0
AUR62027315 Chenopodium quinoa HOM05D006760 ORTHO05D008121 3.9e-16 89.0 151 41.1
Gohir.D12G202700 Gossypium hirsutum HOM05D006760 ORTHO05D008121 5.1e-16 88.6 95 50.5
Gorai.008G217700 Gossypium raimondii HOM05D006760 ORTHO05D008121 5.1e-16 88.6 95 50.5
EL10Ac5g11912 Beta vulgaris HOM05D006760 ORTHO05D008121 6.7e-16 88.2 150 41.3
Ca_30394_v3 Cicer arietinum L. HOM05D006760 ORTHO05D008121 6.7e-16 88.2 102 53.9
Eucgr.D02586 Eucalyptus grandis HOM05D006760 ORTHO05D008121 1.1e-15 87.4 164 40.9
SalBow8G1564 Salvia bowleyana HOM05D006760 ORTHO05D008121 1.1e-15 87.4 149 39.6
AUR62007417 Chenopodium quinoa HOM05D006760 ORTHO05D008121 1.5e-15 87.0 133 45.1
Gohir.A12G200000 Gossypium hirsutum HOM05D006760 ORTHO05D008121 1.5e-15 87.0 95 49.5
Psat2g143640 Pisum sativum HOM05D006760 ORTHO05D008121 3.3e-15 85.9 103 51.5
RcHm_v2.0_Chr7g0213631 Rosa chinensis HOM05D006760 ORTHO05D008121 3.3e-15 85.9 157 42.0
CANSAT21G1082 Cannabis sativa HOM05D006760 ORTHO05D008121 5.7e-15 85.1 129 43.4
Ca_25094_v3 Cicer arietinum L. HOM05D006760 ORTHO05D008121 9.7e-15 84.3 101 51.5
MSTRG.11878 Avicennia marina HOM05D006760 ORTHO05D008121 1.7e-14 83.6 131 40.5
Cpa.g.c37635 Carica papaya HOM05D006760 ORTHO05D008121 1.7e-14 83.6 119 44.5
Manes.15G182500 Manihot esculenta HOM05D006760 ORTHO05D008121 1.7e-14 83.6 117 40.2
Prupe.5G019400 Prunus persica HOM05D006760 ORTHO05D008121 1.7e-14 83.6 79 59.5
CARHR154260 Cardamine hirsuta HOM05D006760 ORTHO05D008121 2.2e-14 83.2 75 56.0
Medtr5g026680 Medicago truncatula HOM05D006760 ORTHO05D008121 2.8e-14 82.8 101 50.5
Carub.0005s1175 Capsella rubella HOM05D006760 ORTHO05D008121 3.7e-14 82.4 75 53.3
CiPaw.12G072300 Carya illinoinensis HOM05D006760 ORTHO05D008121 6.3e-14 81.6 111 45.0
TPR.G17264 Trifolium pratense HOM05D006760 ORTHO05D008121 6.3e-14 81.6 152 38.2
TWI12G1140 Tripterygium wilfordii HOM05D006760 ORTHO05D008121 8.2e-14 81.3 135 41.5
AL5G24580 Arabidopsis lyrata HOM05D006760 ORTHO05D008121 1.1e-13 80.9 75 52.0
MD06G1017100 Malus domestica HOM05D006760 ORTHO05D008121 1.1e-13 80.9 159 41.5
Aa31LG9G15690 Aethionema arabicum HOM05D006760 ORTHO05D008121 1.4e-13 80.5 75 52.0
BcaB01g01049 Brassica carinata HOM05D006760 ORTHO05D008121 1.4e-13 80.5 75 53.3
THA.LOC104798519 Tarenaya hassleriana HOM05D006760 ORTHO05D008121 2.4e-13 79.7 152 36.8
BcaC01g01943 Brassica carinata HOM05D006760 ORTHO05D008121 3.1e-13 79.3 107 45.8
C03p70350 Brassica napus HOM05D006760 ORTHO05D008121 3.1e-13 79.3 107 45.8
BolC3t19291H Brassica oleracea HOM05D006760 ORTHO05D008121 3.1e-13 79.3 107 45.8
Thhalv10002556m.g Eutrema salsugineum HOM05D006760 ORTHO05D008121 3.1e-13 79.3 106 43.4
Ah.12g056060 Amaranthus hybridus HOM05D006760 ORTHO05D008121 9.1e-13 77.8 117 39.3
Hund11097 Selenicereus undatus HOM05D006760 ORTHO05D008121 9.1e-13 77.8 114 38.6
FAN13G0245 Fragaria x ananassa HOM05D006760 ORTHO05D008121 1.5e-12 77.0 146 43.2
PGR031G0562 Punica granatum HOM05D006760 ORTHO05D008121 1.5e-12 77.0 75 50.7
AT3G45900 Arabidopsis thaliana HOM05D006760 ORTHO05D008121 2.6e-12 76.3 76 51.3
FvH4_5g24100 Fragaria vesca HOM05D006760 ORTHO05D008121 2.6e-12 76.3 146 43.2
FAN18G0636 Fragaria x ananassa HOM05D006760 ORTHO05D008121 2.6e-12 76.3 146 43.2
FAN04G2385 Fragaria x ananassa HOM05D006760 ORTHO05D008121 1.0e-11 74.3 122 43.4
FAN18G2939 Fragaria x ananassa HOM05D006760 ORTHO05D008121 1.3e-11 73.9 146 42.5
HanXRQChr06g0173431 Helianthus annuus HOM05D006760 ORTHO05D008121 3.8e-11 72.4 74 51.4
HanXRQChr17g0537101 Helianthus annuus HOM05D006760 ORTHO05D008121 3.8e-11 72.4 145 36.6
Lsat_1_v5_gn_3_23361 Lactuca sativa HOM05D006760 ORTHO05D008121 6.5e-11 71.6 74 50.0
Sp5g15640 Schrenkiella parvula HOM05D006760 ORTHO05D008121 1.1e-10 70.9 106 43.4
BraA06t25205Z Brassica rapa HOM05D006760 ORTHO05D008121 1.4e-10 70.5 75 50.7
ECA246G2456 Erigeron canadensis HOM05D006760 ORTHO05D008121 1.4e-10 70.5 89 46.1
PGR067G0006 Punica granatum HOM05D006760 ORTHO05D008121 1.4e-10 70.5 75 49.3
A06p21180 Brassica napus HOM05D006760 ORTHO05D008121 5.5e-10 68.6 107 42.1
Lalb_Chr16g0380681 Lupinus albus HOM05D006760 ORTHO05D008121 1.2e-09 67.4 107 43.0
PSO782G3372 Papaver somniferum HOM05D006760 ORTHO05D008121 1.2e-09 67.4 75 48.0
Os03g0853600 Oryza sativa ssp. japonica HOM05D006760 ORTHO05D008121 1.6e-09 67.0 58 53.4
unitig_699.g19677 Utricularia gibba HOM05D006760 ORTHO05D008121 6.1e-09 65.1 140 38.6
Zm00001eb064790 Zea mays HOM05D006760 ORTHO05D008121 6.1e-09 65.1 58 51.7
CDE11G0454 Ceratophyllum demersum HOM05D006760 ORTHO05D008121 3.9e-08 62.4 95 36.8
Aqoxy3G00108 Aquilegia oxysepala HOM05D006760 ORTHO05D008121 6.7e-08 61.6 137 36.5
MD00G1002200 Malus domestica HOM05D006760 ORTHO05D008121 3.3e-07 59.3 63 49.2
PSO063G6156 Papaver somniferum HOM05D006760 ORTHO05D008121 3.3e-07 59.3 75 45.3
HPP92_015129 Vanilla planifolia HOM05D006760 ORTHO05D008121 9.7e-07 57.8 75 42.7
unitig_52.g17262 Utricularia gibba HOM05D006760 ORTHO05D008121 1.7e-06 57.0 119 36.1


User provided reference genes

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