Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 5.2e-193 677.6 345 100.0
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.2e-103 379.8 391 56.3
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.9e-102 376.7 391 56.0
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 3.6e-101 372.5 389 55.8
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.5e-99 367.1 408 54.2
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 3.6e-93 345.9 436 49.3
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 4.7e-85 318.9 393 48.3
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 8.8e-84 314.7 381 47.0
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 3.4e-83 312.8 374 47.6
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 1.2e-80 304.3 396 46.2
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 5.0e-79 298.9 392 46.2
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 3.3e-78 296.2 382 45.8
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 5.6e-78 295.4 382 45.0
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 6.8e-76 288.5 405 45.2
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 3.7e-74 282.7 398 44.0
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 1.2e-72 277.7 405 43.0
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 2.7e-72 276.6 409 41.8
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 4.6e-72 275.8 407 43.2
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 1.0e-71 274.6 396 44.2
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.3e-71 274.2 406 42.9
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.3e-71 274.2 406 42.9
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 1.1e-70 271.2 384 43.0
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 1.5e-70 270.8 403 42.7
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 1.5e-70 270.8 406 42.6
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.9e-70 270.4 391 42.2
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 4.3e-70 269.2 397 44.1
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 9.5e-70 268.1 381 41.5
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.2e-69 267.7 406 42.1
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 1.6e-69 267.3 417 40.8
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.1e-69 266.9 403 41.2
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.1e-68 264.6 403 41.2
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 1.1e-68 264.6 387 43.4
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 3.1e-68 263.1 419 41.1
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 5.2e-68 262.3 389 41.4
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 6.8e-68 261.9 403 41.2
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 6.8e-68 261.9 398 42.2
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 6.8e-68 261.9 377 44.0
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 1.5e-67 260.8 385 44.7
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 1.5e-67 260.8 415 40.0
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.0e-67 260.4 403 40.9
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 2.6e-67 260.0 390 41.5
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 3.4e-67 259.6 403 41.2
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 7.5e-67 258.5 425 40.2
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 1.3e-66 257.7 391 40.9
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 1.3e-66 257.7 386 42.2
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 1.7e-66 257.3 389 41.4
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 2.9e-66 256.5 409 41.1
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 1.4e-65 254.2 383 41.8
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 5.4e-65 252.3 429 39.6
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 5.4e-65 252.3 395 40.8
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 2.7e-64 250.0 379 41.2
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 3.5e-64 249.6 393 41.2
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 4.6e-64 249.2 383 41.8
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 5.0e-63 245.7 382 40.3
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 5.0e-63 245.7 381 40.9
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 1.1e-62 244.6 396 39.6
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 1.9e-62 243.8 383 40.2
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.8e-61 240.0 420 38.1
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 3.6e-61 239.6 383 39.7
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 8.1e-61 238.4 405 40.0
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 3.1e-60 236.5 387 39.8
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 4.0e-60 236.1 386 42.5
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 6.8e-60 235.3 411 39.7
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 2.6e-59 233.4 383 39.2
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 1.7e-58 230.7 439 36.9
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 6.4e-58 228.8 400 39.0
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 1.1e-57 228.0 382 37.7
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 7.1e-57 225.3 377 38.5
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 1.6e-56 224.2 378 38.1
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 4.6e-56 222.6 405 37.0
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 6.0e-56 222.2 409 36.9
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 3.0e-55 219.9 385 38.7
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 3.9e-55 219.5 378 38.4
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 3.9e-55 219.5 378 40.5
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 3.9e-55 219.5 378 40.5
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 5.1e-55 219.2 377 37.9
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 1.2e-53 214.5 382 38.5
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 1.6e-53 214.2 303 42.6
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 1.1e-52 211.5 391 37.6
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 3.1e-52 209.9 375 37.9
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 4.0e-52 209.5 408 35.5
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 7.6e-51 205.3 413 34.1
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 2.9e-50 203.4 253 45.1
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.4e-50 202.2 382 37.2
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.4e-49 201.1 369 37.1
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 4.1e-49 199.5 388 35.1
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 7.1e-49 198.7 291 43.3
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 1.6e-48 197.6 391 35.3
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 2.1e-48 197.2 330 39.4
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 4.6e-48 196.1 374 35.0
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.3e-47 193.7 390 35.1
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 6.6e-47 192.2 307 39.1
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 3.3e-46 189.9 381 37.0
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 6.2e-45 185.7 224 51.8
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 1.3e-42 177.9 382 33.0
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 2.2e-42 177.2 408 33.1
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 2.2e-42 177.2 351 36.5
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 4.9e-42 176.0 257 40.5
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 8.4e-42 175.3 384 33.9
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 7.1e-41 172.2 382 33.8
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.6e-40 171.0 386 33.7
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 3.5e-40 169.9 387 33.6
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 5.1e-39 166.0 414 31.2
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 5.1e-39 166.0 379 33.8
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 8.7e-39 165.2 336 34.8
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 1.5e-38 164.5 414 30.9
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 2.4e-36 157.1 388 31.2
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 2.4e-36 157.1 386 31.3
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 9.9e-35 151.8 438 29.2
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 9.9e-35 151.8 303 35.3
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 8.4e-34 148.7 218 42.7
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 1.1e-33 148.3 208 43.8
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 6.0e-32 142.5 198 49.5
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 3.3e-30 136.7 395 29.6
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 2.8e-29 133.7 188 43.6
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 2.8e-29 133.7 357 30.8
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 1.2e-27 128.3 377 28.1
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 1.2e-27 128.3 203 36.5
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 2.9e-26 123.6 219 38.4
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 6.0e-24 115.9 148 43.9
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 7.9e-24 115.5 389 26.7
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 1.0e-23 115.2 90 66.7
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 1.0e-23 115.2 90 66.7
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 1.2e-19 101.7 286 30.4
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 5.8e-19 99.4 67 73.1
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 5.8e-19 99.4 379 25.9
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 1.1e-17 95.1 80 62.5
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 2.3e-15 87.4 356 24.7
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 8.2e-13 79.0 90 48.9
COL.COLO4_08387 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.6e-11 73.9 72 52.8
AUR62038226 Chenopodium quinoa HOM05D010117 ORTHO05D012431 5.5e-09 66.2 63 55.6
Hund16694 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.7e-08 63.9 60 61.7
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 3.6e-08 63.5 90 43.3
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 6.1e-08 62.8 139 36.7
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 3.0e-07 60.5 95 38.9
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 6.7e-07 59.3 52 50.0
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 1.9e-06 57.8 349 23.8
CBR_g75372 Chara braunii HOM05D003115 ORTHO05D003595 5.7e-06 56.2 74 36.5


User provided reference genes

Program Settings