Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0019400 Rhododendron simsii HOM05D000141 ORTHO05D014543 1.4e-67 259.6 142 100.0
Rhsim03G0006800 Rhododendron simsii HOM05D000067 ORTHO05D001311 5.7e-29 131.3 216 44.0
vmacro18541 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 6.3e-20 101.3 75 68.0
Rhsim08G0017900 Rhododendron simsii HOM05D000141 ORTHO05D001311 1.8e-19 99.8 75 64.0
CSS0019102 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001311 4.1e-19 98.6 75 64.0
Actinidia06505 Actinidia chinensis HOM05D000141 ORTHO05D001311 9.1e-19 97.4 75 61.3
Dinv27017 Davidia involucrata HOM05D000141 ORTHO05D001311 5.9e-18 94.7 75 61.3
Actinidia25297 Actinidia chinensis HOM05D000141 ORTHO05D001311 7.7e-18 94.4 75 60.0
Cfa006861 Carpinus fangiana HOM05D000141 ORTHO05D001311 2.5e-16 89.4 70 60.0
Nn5g29821 Nelumbo nucifera HOM05D000141 ORTHO05D001311 3.3e-16 89.0 75 56.0
Hund14076 Selenicereus undatus HOM05D000141 ORTHO05D001311 3.3e-16 89.0 75 56.0
Haze_03903 Corylus avellana HOM05D000141 ORTHO05D001311 5.5e-16 88.2 70 60.0
AUR62003690 Chenopodium quinoa HOM05D000141 ORTHO05D001311 9.5e-16 87.4 70 58.6
Ah.03g143250 Amaranthus hybridus HOM05D000141 ORTHO05D001311 1.2e-15 87.0 75 54.7
Prupe.6G205100 Prunus persica HOM05D000141 ORTHO05D001311 1.2e-15 87.0 78 52.6
CiPaw.07G045600 Carya illinoinensis HOM05D000141 ORTHO05D001311 1.6e-15 86.7 78 52.6
AUR62018001 Chenopodium quinoa HOM05D000141 ORTHO05D001311 1.6e-15 86.7 75 56.0
QL06p036404 Quercus lobata HOM05D000141 ORTHO05D001311 1.6e-15 86.7 78 52.6
Ciclev10024772m.g Citrus clementina HOM05D000141 ORTHO05D001311 2.1e-15 86.3 77 54.5
Oeu012260.1 Olea europaea HOM05D000141 ORTHO05D001311 2.1e-15 86.3 75 49.3
MSTRG.2607 Avicennia marina HOM05D000141 ORTHO05D001311 2.8e-15 85.9 75 50.7
Manes.13G102000 Manihot esculenta HOM05D000141 ORTHO05D001311 2.8e-15 85.9 75 52.0
GSVIVG01003948001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.6e-15 85.5 75 53.3
COL.COLO4_27381 Corchorus olitorius HOM05D000141 ORTHO05D001311 4.7e-15 85.1 75 50.7
TWI53G1166 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 4.7e-15 85.1 75 49.3
FAN23G2724 Fragaria x ananassa HOM05D000141 ORTHO05D001311 8.0e-15 84.3 77 51.9
Lju188C9T2 Lonicera japonica HOM05D000141 ORTHO05D001311 8.0e-15 84.3 75 50.7
CANSAT01G3278 Cannabis sativa HOM05D000141 ORTHO05D001311 1.0e-14 84.0 71 52.1
FvH4_1g19311 Fragaria vesca HOM05D000141 ORTHO05D001311 1.0e-14 84.0 77 51.9
FAN19G0828 Fragaria x ananassa HOM05D000141 ORTHO05D001311 1.0e-14 84.0 77 51.9
FAN26G0872 Fragaria x ananassa HOM05D000141 ORTHO05D001311 1.0e-14 84.0 77 51.9
FAN28G1133 Fragaria x ananassa HOM05D000141 ORTHO05D001311 1.0e-14 84.0 77 51.9
Migut.H02276 Erythranthe guttata HOM05D000141 ORTHO05D001311 1.4e-14 83.6 70 54.3
Eucgr.I00567 Eucalyptus grandis HOM05D000141 ORTHO05D001311 1.4e-14 83.6 70 51.4
Thecc.01G087800 Theobroma cacao HOM05D000141 ORTHO05D001311 1.4e-14 83.6 75 53.3
Sopen11g005660 Solanum pennellii HOM05D000141 ORTHO05D001311 1.8e-14 83.2 70 50.0
PGSC0003DMG400016188 Solanum tuberosum HOM05D000141 ORTHO05D001311 1.8e-14 83.2 70 50.0
Glyma.01G021200 Glycine max HOM05D000141 ORTHO05D001311 2.3e-14 82.8 70 54.3
Gohir.A12G085600 Gossypium hirsutum HOM05D000141 ORTHO05D001311 2.3e-14 82.8 75 50.7
Sc16g0000650 Simmondsia chinensis HOM05D000141 ORTHO05D001311 2.3e-14 82.8 75 50.7
Sc16g0001010 Simmondsia chinensis HOM05D000141 ORTHO05D001311 2.3e-14 82.8 75 50.7
Aqoxy6G01483 Aquilegia oxysepala HOM05D000141 ORTHO05D001311 3.0e-14 82.4 76 44.7
Glyma.09G200800 Glycine max HOM05D000141 ORTHO05D001311 3.0e-14 82.4 70 54.3
Lalb_Chr16g0381571 Lupinus albus HOM05D000141 ORTHO05D001311 3.0e-14 82.4 70 55.7
Phvul.002G145000 Phaseolus vulgaris HOM05D000141 ORTHO05D001311 3.0e-14 82.4 78 50.0
RcHm_v2.0_Chr2g0110681 Rosa chinensis HOM05D000141 ORTHO05D001311 3.0e-14 82.4 71 53.5
TWI74G0124 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 3.0e-14 82.4 75 49.3
Gohir.D12G083700 Gossypium hirsutum HOM05D000141 ORTHO05D001311 4.0e-14 82.0 70 54.3
CAN.G1813.5 Capsicum annuum HOM05D000141 ORTHO05D001311 5.2e-14 81.6 70 50.0
HanXRQChr14g0444581 Helianthus annuus HOM05D000141 ORTHO05D001311 5.2e-14 81.6 75 52.0
Hma1.2p1_1754F.1_g300880 Hydrangea macrophylla HOM05D000141 ORTHO05D001311 5.2e-14 81.6 75 54.7
Duzib187G1520 Durio zibethinus HOM05D000141 ORTHO05D001311 6.8e-14 81.3 75 50.7
Solyc11g010920.3 Solanum lycopersicum HOM05D000141 ORTHO05D001311 6.8e-14 81.3 70 50.0
SGA_v2.0_scaffold195G40873 Striga asiatica HOM05D000141 ORTHO05D001311 6.8e-14 81.3 75 48.0
Lalb_Chr09g0325901 Lupinus albus HOM05D000141 ORTHO05D001311 1.2e-13 80.5 70 52.9
VMungo1215G1944 Vigna mungo HOM05D000141 ORTHO05D001311 1.2e-13 80.5 78 48.7
DCAR_003440 Daucus carota HOM05D000141 ORTHO05D001311 1.5e-13 80.1 75 50.7
Gorai.008G093800 Gossypium raimondii HOM05D000141 ORTHO05D001311 1.5e-13 80.1 70 52.9
HanXRQChr07g0188821 Helianthus annuus HOM05D000141 ORTHO05D001311 1.5e-13 80.1 75 48.0
PSO541G4774 Papaver somniferum HOM05D000141 ORTHO05D001311 1.5e-13 80.1 70 54.3
TAR625G0953 Trochodendron aralioides HOM05D000141 ORTHO05D001311 1.5e-13 80.1 75 48.0
PSO675G0929 Papaver somniferum HOM05D000141 ORTHO05D001311 2.0e-13 79.7 70 52.9
Haze_22487 Corylus avellana HOM05D000141 ORTHO05D001311 2.6e-13 79.3 71 47.9
Nitab4.5_0000402g0070 Nicotiana tabacum HOM05D000141 ORTHO05D001311 2.6e-13 79.3 70 48.6
GSVIVG01009205001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.6e-13 79.3 71 53.5
Cc07_g13820 Coffea canephora HOM05D000141 ORTHO05D001311 3.4e-13 79.0 75 49.3
Duzib147G1503 Durio zibethinus HOM05D000141 ORTHO05D001311 3.4e-13 79.0 75 49.3
MBI16_g27901_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001311 3.4e-13 79.0 70 54.3
Peaxi162Scf00085g00531 Petunia axillaris HOM05D000141 ORTHO05D001311 3.4e-13 79.0 75 45.3
Atru.chr3.1212 Acer truncatum HOM05D000141 ORTHO05D001311 4.4e-13 78.6 75 50.7
Lsat_1_v5_gn_2_69721 Lactuca sativa HOM05D000141 ORTHO05D001311 4.4e-13 78.6 70 50.0
CSS0012318 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D014543 9.8e-13 77.4 53 66.0
Ca_25221_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001311 1.3e-12 77.0 70 48.6
Lsat_1_v5_gn_3_63140 Lactuca sativa HOM05D000141 ORTHO05D001311 1.3e-12 77.0 70 47.1
Cpa.g.sc55.5 Carica papaya HOM05D000141 ORTHO05D001311 1.7e-12 76.6 75 50.7
PGR031G0460 Punica granatum HOM05D000141 ORTHO05D001311 1.7e-12 76.6 70 44.3
TPR.G28819 Trifolium pratense HOM05D000141 ORTHO05D001311 1.7e-12 76.6 70 48.6
Cfa013813 Carpinus fangiana HOM05D000141 ORTHO05D001311 2.2e-12 76.3 70 47.1
Dinv36958 Davidia involucrata HOM05D000141 ORTHO05D001311 2.2e-12 76.3 50 68.0
Medtr5g031470 Medicago truncatula HOM05D000141 ORTHO05D001311 2.2e-12 76.3 70 48.6
Cpa.g.sc21.41 Carica papaya HOM05D000141 ORTHO05D001311 2.8e-12 75.9 70 48.6
Lj4A86G78 Lonicera japonica HOM05D000141 ORTHO05D001311 2.8e-12 75.9 70 47.1
Medtr5g049820 Medicago truncatula HOM05D000141 ORTHO05D001311 2.8e-12 75.9 68 50.0
TAR256G0003 Trochodendron aralioides HOM05D000141 ORTHO05D001311 2.8e-12 75.9 75 48.0
COL.COLO4_35277 Corchorus olitorius HOM05D000141 ORTHO05D001311 3.7e-12 75.5 75 44.0
ECA238G1069 Erigeron canadensis HOM05D000141 ORTHO05D001311 3.7e-12 75.5 75 45.3
Lj2g0018682 Lotus japonicus HOM05D000141 ORTHO05D001311 3.7e-12 75.5 78 47.4
unitig_62.g23413 Utricularia gibba HOM05D000141 ORTHO05D001311 3.7e-12 75.5 70 44.3
Aa31LG7G14210 Aethionema arabicum HOM05D000141 ORTHO05D001311 4.9e-12 75.1 70 45.7
BraA09t41131Z Brassica rapa HOM05D000141 ORTHO05D001311 4.9e-12 75.1 73 43.8
PSO765G0220 Papaver somniferum HOM05D000141 ORTHO05D014543 4.9e-12 75.1 70 48.6
Psat2g091360 Pisum sativum HOM05D000141 ORTHO05D001311 4.9e-12 75.1 70 54.3
CDE04G2493 Ceratophyllum demersum HOM05D000141 ORTHO05D001311 6.3e-12 74.7 76 43.4
Cc10_g08390 Coffea canephora HOM05D000141 ORTHO05D001311 6.3e-12 74.7 70 44.3
Zm00001eb000890 Zea mays HOM05D000141 ORTHO05D001311 6.3e-12 74.7 68 50.0
Medtr5g049620 Medicago truncatula HOM05D000141 ORTHO05D001311 8.3e-12 74.3 68 48.5
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-11 73.9 62 54.8
QL09p018403 Quercus lobata HOM05D000141 ORTHO05D001311 1.1e-11 73.9 70 44.3
BcaC07g41046 Brassica carinata HOM05D000141 ORTHO05D001311 1.4e-11 73.6 70 44.3
A09p57390 Brassica napus HOM05D000141 ORTHO05D001311 1.4e-11 73.6 70 44.3
C08p40470 Brassica napus HOM05D000141 ORTHO05D001311 1.4e-11 73.6 70 44.3
BolC8t51618H Brassica oleracea HOM05D000141 ORTHO05D001311 1.4e-11 73.6 70 44.3
arahy.Tifrunner.gnm1.ann1.87KB7U Arachis hypogaea HOM05D000141 ORTHO05D001311 1.8e-11 73.2 70 52.9
arahy.Tifrunner.gnm1.ann1.DW36QZ Arachis hypogaea HOM05D000141 ORTHO05D001311 1.8e-11 73.2 70 52.9
CSS0024215 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001311 1.8e-11 73.2 70 45.7
Dinv42594 Davidia involucrata HOM05D000141 ORTHO05D001311 1.8e-11 73.2 62 51.6
Thhalv10000025m.g Eutrema salsugineum HOM05D000141 ORTHO05D001311 1.8e-11 73.2 70 42.9
PSO349G0084 Papaver somniferum HOM05D000141 ORTHO05D014543 2.4e-11 72.8 70 48.6
Duzib093G0423 Durio zibethinus HOM05D000141 ORTHO05D001311 4.1e-11 72.0 70 47.1
Rhsim07G0213200 Rhododendron simsii HOM05D000141 ORTHO05D001311 4.1e-11 72.0 75 46.7
Thecc.08G073700 Theobroma cacao HOM05D000141 ORTHO05D001311 5.4e-11 71.6 70 45.7
CiPaw.07G163200 Carya illinoinensis HOM05D000141 ORTHO05D001311 7.0e-11 71.2 70 45.7
ATR0767G147 Amborella trichopoda HOM05D000141 ORTHO05D001311 9.2e-11 70.9 68 45.6
AL4G12150 Arabidopsis lyrata HOM05D000141 ORTHO05D001311 9.2e-11 70.9 75 42.7
THA.LOC104807667 Tarenaya hassleriana HOM05D000141 ORTHO05D001311 1.2e-10 70.5 70 42.9
Aa31LG6G14950 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.6e-10 70.1 71 42.3
AT2G22610 Arabidopsis thaliana HOM05D000141 ORTHO05D001311 1.6e-10 70.1 75 41.3
Carub.0004s0176 Capsella rubella HOM05D000141 ORTHO05D001311 2.0e-10 69.7 70 44.3
Lsat_1_v5_gn_3_86981 Lactuca sativa HOM05D000141 ORTHO05D014543 2.0e-10 69.7 66 47.0
Atru.chr13.980 Acer truncatum HOM05D000141 ORTHO05D001311 2.7e-10 69.3 70 44.3
Ciclev10000147m.g Citrus clementina HOM05D000141 ORTHO05D001311 2.7e-10 69.3 70 42.9
Sp4g01650 Schrenkiella parvula HOM05D000141 ORTHO05D001311 2.7e-10 69.3 70 42.9
Atru.chr2.3472 Acer truncatum HOM05D000141 ORTHO05D001311 3.5e-10 68.9 75 44.0
Potri.002G110600 Populus trichocarpa HOM05D000141 ORTHO05D001311 5.9e-10 68.2 70 44.3
CDE02G4435 Ceratophyllum demersum HOM05D000141 ORTHO05D001311 7.8e-10 67.8 75 41.3
Peaxi162Scf01414g00011 Petunia axillaris HOM05D000141 ORTHO05D001311 1.0e-09 67.4 70 38.6
vmacro04638 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 1.0e-09 67.4 60 51.7
RcHm_v2.0_Chr7g0234871 Rosa chinensis HOM05D000141 ORTHO05D001311 1.3e-09 67.0 116 30.2
Gorai.009G228400 Gossypium raimondii HOM05D000141 ORTHO05D001311 2.3e-09 66.2 70 44.3
arahy.Tifrunner.gnm1.ann1.EWVD58 Arachis hypogaea HOM05D000141 ORTHO05D001311 2.9e-09 65.9 68 51.5
arahy.Tifrunner.gnm1.ann1.ZX9CFH Arachis hypogaea HOM05D000141 ORTHO05D001311 2.9e-09 65.9 68 51.5
CARHR113830 Cardamine hirsuta HOM05D000141 ORTHO05D001311 2.9e-09 65.9 70 42.9
FAN08G1721 Fragaria x ananassa HOM05D000141 ORTHO05D001311 2.9e-09 65.9 59 40.7
FAN18G0148 Fragaria x ananassa HOM05D000141 ORTHO05D001311 2.9e-09 65.9 59 40.7
Gohir.A05G218500 Gossypium hirsutum HOM05D000141 ORTHO05D001311 2.9e-09 65.9 70 42.9
Gohir.D05G221200 Gossypium hirsutum HOM05D000141 ORTHO05D001311 2.9e-09 65.9 70 42.9
MD15G1388700 Malus domestica HOM05D000141 ORTHO05D001311 3.8e-09 65.5 70 44.3
MD08G1202900 Malus domestica HOM05D000141 ORTHO05D001311 5.0e-09 65.1 63 47.6
CDE02G4125 Ceratophyllum demersum HOM05D000141 ORTHO05D001311 6.6e-09 64.7 75 41.3
FvH4_5g34300 Fragaria vesca HOM05D000141 ORTHO05D001311 6.6e-09 64.7 59 40.7
Sabra02G0087100 Salix brachista HOM05D000141 ORTHO05D001311 8.6e-09 64.3 68 44.1
Actinidia29659 Actinidia chinensis HOM05D000141 ORTHO05D001311 1.1e-08 63.9 70 41.4
HPP92_015090 Vanilla planifolia HOM05D000141 ORTHO05D001311 3.3e-08 62.4 75 36.0
Prupe.1G535100 Prunus persica HOM05D000141 ORTHO05D001311 2.8e-07 59.3 63 39.7
SEGI_20995 Sequoiadendron giganteum HOM05D000141 ORTHO05D001311 8.0e-07 57.8 70 37.1


User provided reference genes

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