Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 1.1e-207 726.5 375 100.0
Actinidia00041 Actinidia chinensis HOM05D006881 ORTHO05D008423 4.5e-33 146.4 84 89.3
vmacro15245 Vaccinium macrocarpon HOM05D006881 ORTHO05D008423 7.7e-33 145.6 84 90.5
CSS0005297 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 2.1e-30 137.5 87 85.1
CSS0009612 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 2.1e-30 137.5 87 85.1
Dinv38306 Davidia involucrata HOM05D006881 ORTHO05D008423 4.7e-30 136.3 84 82.1
Oeu021111.1 Olea europaea HOM05D006881 ORTHO05D008423 3.0e-29 133.7 84 81.0
CSS0034417 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 4.0e-29 133.3 87 82.8
Thecc.04G282000 Theobroma cacao HOM05D006881 ORTHO05D008423 4.0e-29 133.3 81 84.0
GSVIVG01017769001 Vitis vinifera HOM05D006881 ORTHO05D008423 8.8e-29 132.1 86 81.4
Duzib212G0198 Durio zibethinus HOM05D006881 ORTHO05D008423 1.5e-28 131.3 81 82.7
Os07g0669600 Oryza sativa ssp. japonica HOM05D006881 ORTHO05D008423 2.6e-28 130.6 81 77.8
Hma1.2p1_0698F.1_g205340 Hydrangea macrophylla HOM05D006881 ORTHO05D008423 7.5e-28 129.0 82 80.5
Nn3g21363 Nelumbo nucifera HOM05D006881 ORTHO05D008423 2.8e-27 127.1 82 78.0
TAR636G2672 Trochodendron aralioides HOM05D006881 ORTHO05D008423 3.7e-27 126.7 84 77.4
Atru.chr4.2800 Acer truncatum HOM05D006881 ORTHO05D008423 4.9e-27 126.3 82 80.5
MSTRG.10082 Avicennia marina HOM05D006881 ORTHO05D008423 6.3e-27 125.9 81 77.8
Nitab4.5_0013689g0020 Nicotiana tabacum HOM05D006881 ORTHO05D008423 6.3e-27 125.9 84 76.2
Solyc01g067580.4 Solanum lycopersicum HOM05D006881 ORTHO05D008423 6.3e-27 125.9 84 75.0
Prupe.1G139200 Prunus persica HOM05D006881 ORTHO05D008423 8.3e-27 125.6 83 77.1
Lalb_Chr18g0051811 Lupinus albus HOM05D006881 ORTHO05D008423 1.1e-26 125.2 84 75.0
Sabra08G0154800 Salix brachista HOM05D006881 ORTHO05D008423 1.4e-26 124.8 82 79.3
PGSC0003DMG400010658 Solanum tuberosum HOM05D006881 ORTHO05D008423 1.4e-26 124.8 84 75.0
TPR.G23710 Trifolium pratense HOM05D006881 ORTHO05D008423 1.4e-26 124.8 81 76.5
CsaV3_3G014430 Cucumis sativus L. HOM05D006881 ORTHO05D008423 2.4e-26 124.0 97 70.1
ClCG05G005980 Citrullus lanatus HOM05D006881 ORTHO05D008423 3.1e-26 123.6 82 79.3
Cc03_g02070 Coffea canephora HOM05D006881 ORTHO05D008423 5.4e-26 122.9 82 79.3
Sopen01g029530 Solanum pennellii HOM05D006881 ORTHO05D008423 5.4e-26 122.9 84 73.8
Aa31LG11G11080 Aethionema arabicum HOM05D006881 ORTHO05D008423 7.0e-26 122.5 81 77.8
MELO3C006643.2 Cucumis melo HOM05D006881 ORTHO05D008423 7.0e-26 122.5 97 69.1
Gohir.A02G048200 Gossypium hirsutum HOM05D006881 ORTHO05D008423 7.0e-26 122.5 80 81.2
Gohir.D02G053300 Gossypium hirsutum HOM05D006881 ORTHO05D008423 7.0e-26 122.5 80 81.2
Gorai.005G059100 Gossypium raimondii HOM05D006881 ORTHO05D008423 7.0e-26 122.5 80 81.2
Lj6g0021421 Lotus japonicus HOM05D006881 ORTHO05D008423 7.0e-26 122.5 85 74.1
Phvul.009G245900 Phaseolus vulgaris HOM05D006881 ORTHO05D008423 9.1e-26 122.1 84 76.2
Psat1g151960 Pisum sativum HOM05D006881 ORTHO05D008423 9.1e-26 122.1 81 75.3
HanXRQChr17g0536111 Helianthus annuus HOM05D006881 ORTHO05D008423 1.2e-25 121.7 85 74.1
Peaxi162Scf00386g00414 Petunia axillaris HOM05D006881 ORTHO05D008423 1.2e-25 121.7 84 76.2
SalBow2G0124 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.2e-25 121.7 84 71.4
SalBow2G2956 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.2e-25 121.7 84 71.4
CAN.G223.19 Capsicum annuum HOM05D006881 ORTHO05D008423 1.6e-25 121.3 84 71.4
ECA246G4172 Erigeron canadensis HOM05D006881 ORTHO05D008423 1.6e-25 121.3 89 73.0
MBI19_g24002_MAGBIO Magnolia biondii HOM05D006881 ORTHO05D008423 1.6e-25 121.3 80 76.2
Manes.03G192600 Manihot esculenta HOM05D006881 ORTHO05D008423 1.6e-25 121.3 84 75.0
SGA_v2.0_scaffold86G26903 Striga asiatica HOM05D006881 ORTHO05D008423 2.0e-25 120.9 88 72.7
Ah.13g074590 Amaranthus hybridus HOM05D006881 ORTHO05D008423 2.7e-25 120.6 93 68.8
Cpa.g.sc16.153 Carica papaya HOM05D006881 ORTHO05D008423 2.7e-25 120.6 81 76.5
Glyma.09G046900 Glycine max HOM05D006881 ORTHO05D008423 3.5e-25 120.2 91 72.5
unitig_748.g8741 Utricularia gibba HOM05D006881 ORTHO05D008423 3.5e-25 120.2 84 75.0
arahy.Tifrunner.gnm1.ann1.NXX1KJ Arachis hypogaea HOM05D006881 ORTHO05D008423 4.5e-25 119.8 98 68.4
A02p04970 Brassica napus HOM05D006881 ORTHO05D008423 4.5e-25 119.8 82 78.0
Potri.008G216700 Populus trichocarpa HOM05D006881 ORTHO05D008423 4.5e-25 119.8 81 77.8
VMungo1309G2079 Vigna mungo HOM05D006881 ORTHO05D008423 4.5e-25 119.8 84 75.0
EL10Ac3g06585 Beta vulgaris HOM05D006881 ORTHO05D008423 5.9e-25 119.4 86 72.1
CANSAT78G0809 Cannabis sativa HOM05D006881 ORTHO05D008423 7.7e-25 119.0 88 71.6
THA.LOC104818851 Tarenaya hassleriana HOM05D006881 ORTHO05D008423 7.7e-25 119.0 85 74.1
arahy.Tifrunner.gnm1.ann1.E8HU74 Arachis hypogaea HOM05D006881 ORTHO05D008423 1.0e-24 118.6 85 74.1
BcaB05g23335 Brassica carinata HOM05D006881 ORTHO05D008423 1.0e-24 118.6 82 76.8
BcaC03g13606 Brassica carinata HOM05D006881 ORTHO05D008423 1.0e-24 118.6 82 76.8
C02p10000 Brassica napus HOM05D006881 ORTHO05D008423 1.0e-24 118.6 82 76.8
BolC2t06902H Brassica oleracea HOM05D006881 ORTHO05D008423 1.0e-24 118.6 82 76.8
Zm00001eb330210 Zea mays HOM05D006881 ORTHO05D008423 1.0e-24 118.6 81 71.6
CiPaw.01G150600 Carya illinoinensis HOM05D006881 ORTHO05D008423 1.3e-24 118.2 81 75.3
BraA02t05456Z Brassica rapa HOM05D006881 ORTHO05D008423 1.7e-24 117.9 82 76.8
DCAR_024558 Daucus carota HOM05D006881 ORTHO05D008423 1.7e-24 117.9 87 71.3
Lsat_1_v5_gn_3_24181 Lactuca sativa HOM05D006881 ORTHO05D008423 1.7e-24 117.9 85 72.9
RcHm_v2.0_Chr4g0421611 Rosa chinensis HOM05D006881 ORTHO05D008423 1.7e-24 117.9 84 73.8
Medtr2g437470 Medicago truncatula HOM05D006881 ORTHO05D008423 2.9e-24 117.1 84 70.2
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 3.8e-24 116.7 84 70.2
Thhalv10014829m.g Eutrema salsugineum HOM05D006881 ORTHO05D008423 3.8e-24 116.7 82 75.6
MD13G1170800 Malus domestica HOM05D006881 ORTHO05D008423 3.8e-24 116.7 83 74.7
Eucgr.B01283 Eucalyptus grandis HOM05D006881 ORTHO05D008423 5.0e-24 116.3 85 71.8
FvH4_4g17670 Fragaria vesca HOM05D006881 ORTHO05D008423 5.0e-24 116.3 84 73.8
FAN12G2006 Fragaria x ananassa HOM05D006881 ORTHO05D008423 5.0e-24 116.3 84 73.8
FAN12G2996 Fragaria x ananassa HOM05D006881 ORTHO05D008423 5.0e-24 116.3 84 73.8
FAN17G1543 Fragaria x ananassa HOM05D006881 ORTHO05D008423 5.0e-24 116.3 84 73.8
Sp6g25790 Schrenkiella parvula HOM05D006881 ORTHO05D008423 5.0e-24 116.3 79 78.5
Carub.0006s1681 Capsella rubella HOM05D006881 ORTHO05D008423 6.6e-24 115.9 79 78.5
AT5G18540 Arabidopsis thaliana HOM05D006881 ORTHO05D008423 8.6e-24 115.5 81 77.8
PSO170G5464 Papaver somniferum HOM05D006881 ORTHO05D008423 8.6e-24 115.5 85 70.6
PSO210G1559 Papaver somniferum HOM05D006881 ORTHO05D008423 8.6e-24 115.5 85 70.6
Ciclev10005896m.g Citrus clementina HOM05D006881 ORTHO05D008423 1.1e-23 115.2 82 75.6
Migut.G00182 Erythranthe guttata HOM05D006881 ORTHO05D008423 1.1e-23 115.2 84 71.4
Glyma.15G154400 Glycine max HOM05D006881 ORTHO05D008423 1.1e-23 115.2 84 73.8
QL06p008283 Quercus lobata HOM05D006881 ORTHO05D008423 1.1e-23 115.2 82 73.2
AL6G29810 Arabidopsis lyrata HOM05D006881 ORTHO05D008423 1.9e-23 114.4 79 78.5
FAN07G1171 Fragaria x ananassa HOM05D006881 ORTHO05D008423 1.9e-23 114.4 84 72.6
CARHR194480 Cardamine hirsuta HOM05D006881 ORTHO05D008423 2.5e-23 114.0 81 75.3
CDE09G1155 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 3.3e-23 113.6 75 77.3
Aqoxy2G03052 Aquilegia oxysepala HOM05D006881 ORTHO05D008423 4.2e-23 113.2 84 70.2
PGR031G0133 Punica granatum HOM05D006881 ORTHO05D008423 5.6e-23 112.8 81 74.1
TWI09G1277 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 5.6e-23 112.8 84 70.2
Hund20570 Selenicereus undatus HOM05D006881 ORTHO05D008423 1.2e-22 111.7 88 67.0
ATR0706G047 Amborella trichopoda HOM05D006881 ORTHO05D008423 1.6e-22 111.3 84 66.7
Sed0007304 Sechium edule HOM05D006881 ORTHO05D008423 2.1e-22 110.9 83 73.5
HPP92_025214 Vanilla planifolia HOM05D006881 ORTHO05D008423 3.6e-22 110.2 81 71.6
HPP92_025226 Vanilla planifolia HOM05D006881 ORTHO05D008423 3.6e-22 110.2 81 71.6
SHI00284 Sapria himalayana HOM05D006881 ORTHO05D008423 1.8e-21 107.8 85 64.7
Sc19g0005040 Simmondsia chinensis HOM05D006881 ORTHO05D008423 4.0e-21 106.7 103 59.2
SMO367G0816 Selaginella moellendorffii HOM05D006881 ORTHO05D008423 1.7e-19 101.3 83 67.5
A10p21020 Brassica napus HOM05D006881 ORTHO05D008423 2.9e-19 100.5 84 66.7
BraA10t44166Z Brassica rapa HOM05D006881 ORTHO05D008423 2.4e-18 97.4 94 61.7
SEGI_11441 Sequoiadendron giganteum HOM05D006881 ORTHO05D008423 7.0e-18 95.9 85 58.8
Mapoly0010s0048 Marchantia polymorpha HOM05D006881 ORTHO05D008423 1.2e-17 95.1 85 57.6
CDE02G3907 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 1.6e-17 94.7 75 69.3
Haze_01236 Corylus avellana HOM05D006881 ORTHO05D008423 2.0e-17 94.4 81 67.9
CSS0015929 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 3.5e-17 93.6 102 57.8
AUR62040384 Chenopodium quinoa HOM05D006881 ORTHO05D008423 4.6e-17 93.2 51 88.2
Pp3c15_10020 Physcomitrium patens HOM05D006881 ORTHO05D008423 4.6e-17 93.2 85 63.5
CSS0002463 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.0e-13 82.0 56 76.8
BcaC04g18670 Brassica carinata HOM05D006881 ORTHO05D008423 4.0e-13 80.1 64 68.8
TWI73G0635 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 1.5e-12 78.2 53 71.7
CBR_g46646 Chara braunii HOM05D006881 ORTHO05D008423 8.3e-11 72.4 54 64.8
C09p57950 Brassica napus HOM05D006881 ORTHO05D008423 1.4e-10 71.6 42 81.0
BolC9t58662H Brassica oleracea HOM05D006881 ORTHO05D008423 1.4e-10 71.6 42 81.0
TAR381G1488 Trochodendron aralioides HOM05D012309 ORTHO05D014791 1.9e-10 71.2 36 94.4
AagrBONN_evm.TU.Sc2ySwM_228.1971 Anthoceros agrestis HOM05D006881 ORTHO05D008423 3.2e-10 70.5 59 61.0
Dinv06674 Davidia involucrata HOM05D003467 ORTHO05D004220 2.7e-09 67.4 36 91.7
Lj2C1229G13 Lonicera japonica HOM05D012309 ORTHO05D014791 4.6e-09 66.6 33 93.9
Nitab4.5_0020169g0010 Nicotiana tabacum HOM05D012309 ORTHO05D014791 2.3e-08 64.3 36 86.1
CAN.G1126.3 Capsicum annuum HOM05D012309 ORTHO05D014791 6.6e-08 62.8 36 83.3
CAN.G1321.12 Capsicum annuum HOM05D012309 ORTHO05D014791 8.6e-08 62.4 36 80.6
CAN.G72.15 Capsicum annuum HOM05D012309 ORTHO05D014791 3.3e-07 60.5 36 80.6
CAN.G72.9 Capsicum annuum HOM05D012309 ORTHO05D014791 3.3e-07 60.5 35 77.1
CsaV3_UNG208180 Cucumis sativus L. HOM05D012309 ORTHO05D020467 2.1e-06 57.8 35 77.1
Nitab4.5_0009709g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.1e-06 57.8 35 77.1
Sopen05g012590 Solanum pennellii HOM05D003467 ORTHO05D004220 3.6e-06 57.0 38 78.9
ATR0661G063 Amborella trichopoda HOM05D012309 ORTHO05D014791 6.2e-06 56.2 38 71.1
CAN.G502.13 Capsicum annuum HOM05D012309 ORTHO05D014791 6.2e-06 56.2 36 75.0
Nitab4.5_0001796g0090 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.2e-06 56.2 36 75.0
Sopen06g007660 Solanum pennellii HOM05D008609 ORTHO05D014791 6.2e-06 56.2 35 80.0
Sed0025530 Sechium edule HOM05D003467 ORTHO05D004220 8.1e-06 55.8 30 86.7


User provided reference genes

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