Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.2e-75 286.6 155 100.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.6e-61 239.6 155 84.5
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.3e-47 192.6 158 68.4
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.1e-44 183.7 156 66.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.4e-44 183.3 152 68.4
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.8e-44 183.0 159 62.9
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 3.1e-44 182.2 157 65.6
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 4.4e-43 178.3 156 64.7
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.8e-42 175.3 158 63.9
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.4e-41 173.3 148 63.5
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 3.2e-41 172.2 160 65.0
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.2e-41 171.8 158 62.7
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 9.3e-41 170.6 158 62.0
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 7.8e-40 167.5 158 62.0
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.3e-39 166.8 157 62.4
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.9e-39 165.2 148 62.2
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.5e-38 163.3 156 58.3
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.3e-38 161.8 149 62.4
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 7.3e-38 161.0 157 60.5
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.8e-37 159.1 157 56.7
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 3.6e-37 158.7 149 61.7
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.6e-37 158.7 149 61.7
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 3.6e-37 158.7 160 55.0
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 3.6e-37 158.7 152 58.6
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 8.1e-37 157.5 152 59.2
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 8.1e-37 157.5 157 58.0
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.1e-36 157.1 164 56.7
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.2e-35 153.7 147 59.2
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.5e-35 153.3 161 55.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.5e-35 151.8 144 59.7
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 5.8e-35 151.4 165 53.9
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 7.6e-35 151.0 159 56.6
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 9.9e-35 150.6 154 57.1
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.7e-34 149.8 156 55.8
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.2e-34 149.4 153 55.6
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 2.2e-34 149.4 155 56.8
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 4.9e-34 148.3 158 57.6
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 6.4e-34 147.9 154 57.1
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 3.2e-33 145.6 157 54.1
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 4.2e-33 145.2 146 58.2
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.2e-32 143.7 153 47.7
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-32 143.3 149 53.7
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-32 143.3 149 53.7
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.6e-32 143.3 146 57.5
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.6e-32 143.3 149 53.7
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.1e-32 142.9 150 58.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.0e-32 141.4 145 59.3
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 7.9e-32 141.0 152 53.9
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 7.9e-32 141.0 151 53.0
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 3.9e-31 138.7 138 58.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 3.9e-31 138.7 155 54.2
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 5.1e-31 138.3 156 55.1
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.1e-30 137.1 185 47.0
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.5e-30 136.7 156 48.7
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.9e-30 136.3 177 49.7
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.9e-30 136.3 147 56.5
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 3.3e-30 135.6 165 50.3
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 2.1e-29 132.9 147 50.3
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.8e-29 132.5 149 51.7
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.8e-29 132.5 149 51.7
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 2.8e-29 132.5 140 53.6
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.7e-29 132.1 159 47.8
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.7e-29 132.1 155 51.0
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 6.2e-29 131.3 160 55.6
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 6.2e-29 131.3 146 52.1
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 8.1e-29 131.0 149 51.7
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.4e-28 130.2 154 55.2
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.8e-28 129.8 120 60.0
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.8e-28 129.8 152 50.0
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.8e-28 129.8 152 50.0
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 5.3e-28 128.3 154 51.3
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 3.4e-27 125.6 148 53.4
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 5.8e-27 124.8 132 52.3
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-26 123.6 159 49.1
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.2e-26 122.9 150 47.3
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 2.9e-26 122.5 149 50.3
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.8e-26 122.1 151 51.0
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 6.5e-26 121.3 147 46.3
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.9e-25 119.8 156 46.8
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 5.5e-25 118.2 144 50.0
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-24 117.1 126 56.3
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.6e-24 116.7 149 51.0
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.3e-23 113.6 183 42.1
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.3e-23 113.6 146 49.3
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.7e-23 110.9 150 46.0
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.5e-22 109.4 145 42.8
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.3e-22 109.0 152 45.4
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.3e-22 109.0 155 43.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 4.3e-22 108.6 149 47.0
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.7e-22 108.2 118 50.0
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-22 108.2 146 47.9
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.4e-22 107.8 125 48.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-22 107.8 146 47.9
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-22 107.8 146 47.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-21 107.1 109 56.0
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.6e-21 106.7 156 44.2
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 2.8e-21 105.9 125 48.0
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-21 105.9 146 47.3
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.7e-21 105.5 149 43.6
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 3.7e-21 105.5 119 50.4
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.2e-21 104.8 155 42.6
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 6.2e-21 104.8 146 45.9
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 6.2e-21 104.8 146 46.6
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 1.8e-20 103.2 150 42.0
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-20 102.8 145 45.5
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.0e-20 102.1 119 50.4
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 9.0e-20 100.9 146 45.2
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 9.0e-20 100.9 146 45.2
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 9.0e-20 100.9 137 44.5
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.2e-19 100.5 125 46.4
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-19 100.5 131 48.9
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-19 100.5 146 45.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.0e-19 99.8 154 41.6
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 4.5e-19 98.6 146 44.5
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 5.8e-19 98.2 149 42.3
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.0e-18 97.4 160 42.5
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.3e-18 97.1 176 39.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-18 97.1 147 44.9
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 2.9e-18 95.9 145 45.5
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.5e-18 94.7 146 41.1
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 8.4e-18 94.4 147 44.2
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.1e-17 94.0 100 57.0
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-17 93.2 143 43.4
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-17 93.2 150 42.7
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.2e-17 92.4 160 38.1
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 3.2e-17 92.4 116 48.3
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 4.2e-17 92.0 162 42.0
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.2e-17 92.0 160 39.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 5.5e-17 91.7 165 37.6
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 5.5e-17 91.7 158 42.4
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.1e-17 91.3 148 43.2
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 7.1e-17 91.3 153 40.5
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-16 90.5 148 42.6
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-16 90.1 156 44.9
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.7e-16 89.4 147 44.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 2.7e-16 89.4 155 38.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 4.6e-16 88.6 95 54.7
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 7.9e-16 87.8 171 39.2
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.9e-16 87.8 150 41.3
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 1.0e-15 87.4 165 36.4
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-15 86.7 153 40.5
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 2.3e-15 86.3 116 45.7
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.0e-15 85.9 122 47.5
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 3.0e-15 85.9 140 37.9
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 5.1e-15 85.1 184 37.5
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 8.7e-15 84.3 156 41.0
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-14 83.6 160 38.8
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 1.9e-14 83.2 142 39.4
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.7e-14 81.6 92 46.7
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.3e-13 80.5 142 42.3
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 3.7e-13 79.0 158 37.3
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 4.8e-13 78.6 169 36.1
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 4.8e-13 78.6 120 44.2
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 6.3e-13 78.2 144 35.4
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.8e-12 76.6 161 35.4
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.4e-12 76.3 161 35.4
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 3.1e-12 75.9 145 34.5
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 5.3e-12 75.1 148 37.2
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 5.3e-12 75.1 152 38.2
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.0e-11 73.2 132 42.4
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 5.9e-11 71.6 171 31.0
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-10 70.9 148 37.8
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 1.0e-10 70.9 139 33.8
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 3.8e-10 68.9 171 30.4
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 6.5e-10 68.2 141 37.6
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 6.5e-10 68.2 122 43.4
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 8.5e-10 67.8 171 31.6
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 8.5e-10 67.8 171 31.6
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 8.5e-10 67.8 161 33.5
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 8.5e-10 67.8 150 34.7
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 8.5e-10 67.8 140 41.4
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-09 67.4 160 36.9
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.4e-09 67.0 172 32.0
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-09 66.6 148 36.5
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.2e-09 65.9 143 37.1
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 5.5e-09 65.1 152 36.2
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 5.5e-09 65.1 141 36.9
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.4e-09 64.3 158 34.2
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-08 63.9 162 33.3
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 2.1e-08 63.2 161 32.9
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 2.1e-08 63.2 137 37.2
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 1.8e-07 60.1 122 38.5
QL06p009759 Quercus lobata HOM05D003565 ORTHO05D003943 8.8e-07 57.8 83 44.6


User provided reference genes

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