Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0003800 Rhododendron simsii HOM05D007370 ORTHO05D009394 0.0e+00 1146.0 572 100.0
Dinv15168 Davidia involucrata HOM05D007370 ORTHO05D009394 7.6e-181 637.9 429 73.4
Haze_01298 Corylus avellana HOM05D007370 ORTHO05D009394 1.7e-169 600.1 404 71.5
CiPaw.01G138600 Carya illinoinensis HOM05D007370 ORTHO05D009394 6.6e-169 598.2 423 69.0
Atru.chr4.3000 Acer truncatum HOM05D007370 ORTHO05D009394 2.5e-168 596.3 427 70.0
TAR362G0601 Trochodendron aralioides HOM05D007370 ORTHO05D009394 5.3e-166 588.6 420 68.3
Prupe.1G117500 Prunus persica HOM05D007370 ORTHO05D009394 6.9e-166 588.2 424 67.9
RcHm_v2.0_Chr4g0425231 Rosa chinensis HOM05D007370 ORTHO05D009394 1.5e-165 587.0 420 69.5
Manes.15G004200 Manihot esculenta HOM05D007370 ORTHO05D009394 3.4e-165 585.9 425 69.4
DCAR_002511 Daucus carota HOM05D007370 ORTHO05D009394 5.8e-165 585.1 422 69.2
FvH4_4g19730 Fragaria vesca HOM05D007370 ORTHO05D009394 9.9e-165 584.3 424 68.6
Duzib052G0732 Durio zibethinus HOM05D007370 ORTHO05D009394 2.2e-164 583.2 422 68.5
Potri.010G145700 Populus trichocarpa HOM05D007370 ORTHO05D009394 2.9e-164 582.8 426 67.8
FAN07G1244 Fragaria x ananassa HOM05D007370 ORTHO05D009394 1.4e-163 580.5 427 67.9
COL.COLO4_34615 Corchorus olitorius HOM05D007370 ORTHO05D009394 1.6e-162 577.0 424 67.0
Lj6A691G74 Lonicera japonica HOM05D007370 ORTHO05D009394 2.1e-162 576.6 438 68.3
Nn6g33643 Nelumbo nucifera HOM05D007370 ORTHO05D009394 6.0e-162 575.1 416 68.3
Cc03_g00820 Coffea canephora HOM05D007370 ORTHO05D009394 6.7e-161 571.6 425 68.5
Thecc.04G300700 Theobroma cacao HOM05D007370 ORTHO05D009394 4.3e-160 568.9 421 67.5
Migut.G00060 Erythranthe guttata HOM05D007370 ORTHO05D009394 1.6e-159 567.0 422 66.4
MBI18_g37561_MAGBIO Magnolia biondii HOM05D007370 ORTHO05D009394 2.1e-159 566.6 435 65.7
Gohir.A01G034400 Gossypium hirsutum HOM05D007370 ORTHO05D009394 2.8e-159 566.2 428 66.4
VMungo0540G1057 Vigna mungo HOM05D007370 ORTHO05D009394 2.8e-159 566.2 398 69.3
Glyma.09G035700 Glycine max HOM05D007370 ORTHO05D009394 1.4e-158 563.9 419 68.0
PGR142G3192 Punica granatum HOM05D007370 ORTHO05D009394 1.8e-158 563.5 423 65.7
Lj6g0027049 Lotus japonicus HOM05D007370 ORTHO05D009394 2.4e-158 563.1 420 67.4
Phvul.006G118000 Phaseolus vulgaris HOM05D007370 ORTHO05D009394 2.4e-158 563.1 414 66.9
Sed0008389 Sechium edule HOM05D007370 ORTHO05D009394 2.4e-158 563.1 436 64.9
Eucgr.A00294 Eucalyptus grandis HOM05D007370 ORTHO05D009394 3.1e-158 562.8 423 67.4
MD16G1154200 Malus domestica HOM05D007370 ORTHO05D009394 3.4e-157 559.3 422 67.1
Sc13g0006460 Simmondsia chinensis HOM05D007370 ORTHO05D009394 3.8e-156 555.8 422 67.3
CsaV3_6G022350 Cucumis sativus L. HOM05D007370 ORTHO05D009394 4.9e-156 555.4 430 66.0
Sopen12g033950 Solanum pennellii HOM05D007370 ORTHO05D009394 6.4e-156 555.1 422 66.4
Gorai.002G030100 Gossypium raimondii HOM05D007370 ORTHO05D009394 1.3e-153 547.4 450 62.9
TPR.G27253 Trifolium pratense HOM05D007370 ORTHO05D009394 2.3e-153 546.6 428 66.6
Lalb_Chr20g0120861 Lupinus albus HOM05D007370 ORTHO05D009394 1.1e-152 544.3 404 69.3
Medtr2g034140 Medicago truncatula HOM05D007370 ORTHO05D009394 1.5e-152 543.9 427 65.8
EL10Ac3g05507 Beta vulgaris HOM05D007370 ORTHO05D009394 7.4e-152 541.6 419 64.9
PGSC0003DMG400004697 Solanum tuberosum HOM05D007370 ORTHO05D009394 1.3e-151 540.8 422 65.4
Solyc12g099270.2 Solanum lycopersicum HOM05D007370 ORTHO05D009394 2.1e-151 540.0 423 65.7
arahy.Tifrunner.gnm1.ann1.HMTG6S Arachis hypogaea HOM05D007370 ORTHO05D009394 6.2e-151 538.5 422 66.1
Psat1g161680 Pisum sativum HOM05D007370 ORTHO05D009394 1.1e-150 537.7 424 66.0
arahy.Tifrunner.gnm1.ann1.VHF2FI Arachis hypogaea HOM05D007370 ORTHO05D009394 1.8e-150 537.0 417 66.2
CAN.G484.61 Capsicum annuum HOM05D007370 ORTHO05D009394 5.3e-150 535.4 422 64.9
HanXRQChr01g0030981 Helianthus annuus HOM05D007370 ORTHO05D009394 6.9e-150 535.0 416 63.7
ECA248G2723 Erigeron canadensis HOM05D007370 ORTHO05D009394 2.6e-149 533.1 375 68.3
SalBow8G4515 Salvia bowleyana HOM05D007370 ORTHO05D009394 3.4e-149 532.7 390 65.9
QL06p012270 Quercus lobata HOM05D007370 ORTHO05D009394 1.3e-148 530.8 357 72.0
Peaxi162Scf00120g00023 Petunia axillaris HOM05D007370 ORTHO05D009394 6.0e-146 521.9 391 66.2
Nitab4.5_0002150g0160 Nicotiana tabacum HOM05D007370 ORTHO05D009394 5.1e-145 518.8 424 63.7
Nitab4.5_0002294g0020 Nicotiana tabacum HOM05D007370 ORTHO05D009394 2.5e-144 516.5 415 63.4
AUR62039281 Chenopodium quinoa HOM05D007370 ORTHO05D009394 2.0e-141 506.9 419 62.1
unitig_37.g12412 Utricularia gibba HOM05D007370 ORTHO05D009394 1.0e-140 504.6 428 59.6
ATR0693G166 Amborella trichopoda HOM05D007370 ORTHO05D009394 3.8e-140 502.7 388 63.4
FAN12G3716 Fragaria x ananassa HOM05D007370 ORTHO05D009394 2.1e-138 496.9 422 61.1
CDE08G1199 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 7.9e-138 495.0 426 58.7
vmacro15182 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 1.0e-137 494.6 295 84.4
AUR62016207 Chenopodium quinoa HOM05D007370 ORTHO05D009394 4.8e-135 485.7 398 63.1
Zm00001eb356360 Zea mays HOM05D007370 ORTHO05D009394 4.8e-135 485.7 376 65.7
Sabra10G0112300 Salix brachista HOM05D007370 ORTHO05D009394 1.5e-133 480.7 342 69.0
Os05g0157300 Oryza sativa ssp. japonica HOM05D007370 ORTHO05D009394 5.0e-132 475.7 380 63.2
arahy.Tifrunner.gnm1.ann1.DXY8A4 Arachis hypogaea HOM05D007370 ORTHO05D009394 6.5e-132 475.3 455 58.2
CSS0048431 Camellia sinensis var. sinensis HOM05D007370 ORTHO05D009394 3.2e-131 473.0 307 75.9
SEGI_11896 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 2.7e-130 469.9 412 58.5
TWI09G1560 Tripterygium wilfordii HOM05D007370 ORTHO05D009394 5.1e-129 465.7 424 57.8
Lsat_1_v5_gn_1_41060 Lactuca sativa HOM05D007370 ORTHO05D009394 1.7e-127 460.7 344 65.4
Hund11933 Selenicereus undatus HOM05D007370 ORTHO05D009394 1.1e-120 438.0 448 54.7
Ah.04g156700 Amaranthus hybridus HOM05D007370 ORTHO05D009394 5.7e-120 435.6 418 55.3
MELO3C021271.2 Cucumis melo HOM05D007370 ORTHO05D009394 3.0e-113 413.3 309 66.0
Gohir.D01G023538 Gossypium hirsutum HOM05D007370 ORTHO05D009394 8.8e-113 411.8 303 67.0
arahy.Tifrunner.gnm1.ann1.CV4FMG Arachis hypogaea HOM05D007370 ORTHO05D009394 6.3e-111 405.6 336 62.8
Peaxi162Scf01160g00001 Petunia axillaris HOM05D007370 ORTHO05D009394 1.9e-107 394.0 391 56.3
Cpa.g.sc9.57 Carica papaya HOM05D007370 ORTHO05D009394 2.7e-106 390.2 290 66.6
Pp3c14_3570 Physcomitrium patens HOM05D007370 ORTHO05D009394 1.3e-100 371.3 420 50.2
ClCG06G004600 Citrullus lanatus HOM05D007370 ORTHO05D009394 1.7e-100 370.9 453 49.2
CBR_g50285 Chara braunii HOM05D007370 ORTHO05D009394 1.3e-92 344.7 401 46.6
Mapoly0007s0102 Marchantia polymorpha HOM05D007370 ORTHO05D009394 1.8e-89 334.3 305 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2788 Anthoceros agrestis HOM05D007370 ORTHO05D009394 4.0e-89 333.2 344 50.9
SGA_v2.0_scaffold104G30077 Striga asiatica HOM05D007370 ORTHO05D009394 4.4e-88 329.7 303 55.4
Eucgr.A00046 Eucalyptus grandis HOM05D007370 ORTHO05D009394 8.6e-84 315.5 199 77.4
GSVIVG01034991001 Vitis vinifera HOM05D007370 ORTHO05D009394 8.0e-82 308.9 205 70.2
HPP92_027782 Vanilla planifolia HOM05D007370 ORTHO05D009394 1.1e-78 298.5 233 64.4
SMO145G0205 Selaginella moellendorffii HOM05D007370 ORTHO05D009394 1.4e-73 281.6 373 43.4
Mapoly0007s0137 Marchantia polymorpha HOM05D007370 ORTHO05D009394 8.3e-71 272.3 422 39.8
Hund11975 Selenicereus undatus HOM05D007370 ORTHO05D009394 1.4e-65 255.0 236 54.7
vmacro15183 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 5.8e-64 249.6 134 94.0
Ca_03237_v3 Cicer arietinum L. HOM05D007370 ORTHO05D009394 3.2e-62 243.8 203 63.1
QL06p020122 Quercus lobata HOM05D007370 ORTHO05D009394 9.3e-62 242.3 277 49.1
Glyma.15G140501 Glycine max HOM05D007370 ORTHO05D009394 3.2e-46 190.7 187 54.0
arahy.Tifrunner.gnm1.ann1.Y96K7L Arachis hypogaea HOM05D007370 ORTHO05D009394 5.8e-40 169.9 126 64.3
CDE02G4406 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 1.5e-35 155.2 116 66.4
Ca_00981_v3 Cicer arietinum L. HOM05D007370 ORTHO05D009394 5.7e-35 153.3 129 64.3
Oeu001173.1 Olea europaea HOM05D007370 ORTHO05D009394 9.0e-33 146.0 123 61.0
MD13G1153900 Malus domestica HOM05D007370 ORTHO05D009394 2.0e-32 144.8 108 69.4
Actinidia14258 Actinidia chinensis HOM05D001648 ORTHO05D001657 3.3e-27 127.5 124 58.1
HPP92_027781 Vanilla planifolia HOM05D007370 ORTHO05D009394 4.1e-25 120.6 129 51.2
Mapoly0007s0289 Marchantia polymorpha HOM05D007370 ORTHO05D009394 2.2e-18 98.2 126 43.7
Mapoly0252s0002 Marchantia polymorpha HOM05D007370 ORTHO05D009394 2.2e-18 98.2 126 43.7
Glyma.18G184250 Glycine max HOM05D007370 ORTHO05D009394 6.9e-17 93.2 64 68.8
Potri.008G105401 Populus trichocarpa HOM05D007370 ORTHO05D009394 2.2e-15 88.2 51 82.4
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.9e-14 85.1 62 72.6
CDE02G2864 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 1.0e-12 79.3 86 51.2
FAN12G2956 Fragaria x ananassa HOM05D007370 ORTHO05D009394 1.3e-10 72.4 61 65.6
MD13G1154300 Malus domestica HOM05D007370 ORTHO05D009394 6.3e-10 70.1 39 89.7
SEGI_23244 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 6.5e-07 60.1 72 45.8


User provided reference genes

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