Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 6.3e-45 183.7 92 100.0
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 5.0e-42 174.1 92 91.3
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 1.9e-41 172.2 92 89.1
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 1.9e-41 172.2 92 90.2
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 3.2e-41 171.4 92 88.0
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 3.2e-41 171.4 92 89.1
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 3.2e-41 171.4 92 89.1
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 90.2
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 89.1
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 89.1
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 7.2e-41 170.2 92 89.1
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 7.2e-41 170.2 92 89.1
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 7.2e-41 170.2 92 89.1
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 7.2e-41 170.2 92 89.1
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 1.2e-40 169.5 92 89.1
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 1.6e-40 169.1 91 87.9
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 2.7e-40 168.3 87 92.0
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 3.6e-40 167.9 92 88.0
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 4.7e-40 167.5 92 89.1
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 4.7e-40 167.5 92 88.0
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 6.1e-40 167.2 92 88.0
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 7.9e-40 166.8 92 87.0
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 1.0e-39 166.4 92 87.0
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 1.0e-39 166.4 92 87.0
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 87.0
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 2.3e-39 165.2 92 87.0
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 3.0e-39 164.9 92 88.0
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 6.7e-39 163.7 92 84.8
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 6.7e-39 163.7 92 83.7
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 8.8e-39 163.3 92 87.0
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 1.1e-38 162.9 91 84.6
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 1.1e-38 162.9 92 84.8
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 2.0e-38 162.2 90 86.7
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 2.6e-38 161.8 92 84.8
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 3.3e-38 161.4 90 87.8
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 4.4e-38 161.0 90 83.3
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 4.4e-38 161.0 87 89.7
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 5.7e-38 160.6 90 86.7
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 5.7e-38 160.6 90 83.3
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 5.7e-38 160.6 92 83.7
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 84.4
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 84.4
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 84.4
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 85.6
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 84.4
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 84.4
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 7.4e-38 160.2 92 82.6
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 1.7e-37 159.1 90 82.2
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 1.7e-37 159.1 92 84.8
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 2.2e-37 158.7 90 83.3
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 3.7e-37 157.9 90 80.0
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 4.8e-37 157.5 91 82.4
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 4.8e-37 157.5 91 82.4
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 4.8e-37 157.5 92 81.5
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 4.8e-37 157.5 90 81.1
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 8.2e-37 156.8 88 84.1
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 8.2e-37 156.8 90 82.2
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 1.1e-36 156.4 90 83.3
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 1.1e-36 156.4 90 83.3
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 1.4e-36 156.0 92 80.4
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.4e-36 156.0 92 81.5
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 4.1e-36 154.5 90 82.2
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 4.1e-36 154.5 92 78.3
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 1.2e-35 152.9 92 79.3
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 1.6e-35 152.5 92 80.4
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 1.6e-35 152.5 88 81.8
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 2.0e-35 152.1 92 78.3
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 79.3
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 79.3
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 79.3
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 78.3
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 4.5e-35 151.0 84 83.3
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 5.9e-35 150.6 90 78.9
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 7.7e-35 150.2 92 78.3
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 7.7e-35 150.2 92 78.3
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 7.7e-35 150.2 92 78.3
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 7.7e-35 150.2 92 78.3
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 7.7e-35 150.2 92 78.3
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 1.0e-34 149.8 90 78.9
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.3e-34 149.4 84 82.1
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 1.3e-34 149.4 92 79.3
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 1.7e-34 149.1 92 77.2
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 2.2e-34 148.7 135 60.7
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 2.2e-34 148.7 88 78.4
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 2.9e-34 148.3 92 77.2
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 2.9e-34 148.3 92 77.2
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 2.9e-34 148.3 92 77.2
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 2.9e-34 148.3 92 77.2
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 2.9e-34 148.3 88 76.1
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 3.8e-34 147.9 92 77.2
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 3.8e-34 147.9 92 77.2
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 3.8e-34 147.9 92 77.2
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 5.0e-34 147.5 90 80.0
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 1.1e-33 146.4 88 77.3
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 1.5e-33 146.0 89 78.7
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 1.2e-32 142.9 92 75.0
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 1.2e-32 142.9 92 75.0
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 5.2e-31 137.5 82 81.7
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 1.2e-30 136.3 92 72.8
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 1.2e-30 136.3 92 72.8
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 7.5e-30 133.7 92 75.0
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 3.7e-29 131.3 120 57.5
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 6.3e-29 130.6 144 53.5
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 3.1e-28 128.3 66 90.9
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 4.1e-28 127.9 119 55.5
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 4.5e-27 124.4 66 87.9
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 5.9e-27 124.0 73 79.5
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 2.9e-26 121.7 66 84.8
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 1.1e-25 119.8 118 59.3
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 2.5e-25 118.6 66 81.8
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 4.2e-25 117.9 91 67.0
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 1.5e-22 109.4 65 76.9
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 1.6e-19 99.4 89 59.6
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 2.7e-19 98.6 94 59.6
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 2.7e-19 98.6 60 73.3
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 5.9e-19 97.4 96 53.1
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 1.1e-17 93.2 58 70.7
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 5.2e-15 84.3 83 45.8
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 1.2e-14 83.2 107 46.7
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 2.6e-14 82.0 69 52.2
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 4.4e-14 81.3 90 44.4
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 7.5e-14 80.5 72 59.7
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 2.8e-13 78.6 66 63.6
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 6.3e-13 77.4 72 58.3
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 4.1e-12 74.7 56 69.6
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 4.7e-08 61.2 64 46.9
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.4e-07 59.7 62 43.5
Actinidia07522 Actinidia chinensis HOM05D006364 ORTHO05D007968 2.0e-06 55.8 33 72.7
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 5.7e-06 54.3 71 38.0
Ciclev10027020m.g Citrus clementina HOM05D006364 ORTHO05D007968 9.8e-06 53.5 138 34.8


User provided reference genes

Program Settings