Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 9.0e-204 713.4 363 100.0
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.1e-144 516.2 364 76.6
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 7.6e-102 374.8 310 69.4
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.4e-100 369.8 308 68.8
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.1e-89 334.3 311 63.3
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 9.6e-89 331.3 290 61.7
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 6.2e-88 328.6 299 62.5
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.8e-87 327.0 291 63.2
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 9.0e-87 324.7 293 62.1
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 1.5e-86 323.9 226 75.7
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.6e-86 323.2 288 62.5
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 2.6e-86 323.2 323 56.7
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 4.5e-86 322.4 297 62.6
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 5.8e-86 322.0 303 61.1
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.2e-85 320.1 296 61.5
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 2.2e-85 320.1 306 60.5
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.2e-85 320.1 297 60.9
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.9e-85 318.9 305 60.7
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 2.1e-83 313.5 308 58.8
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 6.0e-83 312.0 285 60.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 7.9e-83 311.6 295 60.0
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.1e-82 308.9 295 59.7
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.9e-81 307.0 295 60.7
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.9e-81 307.0 309 59.2
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 4.3e-81 305.8 307 58.3
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 7.4e-81 305.1 289 58.8
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 9.6e-81 304.7 312 57.4
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 1.6e-80 303.9 307 57.7
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.6e-80 303.9 289 59.5
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.6e-80 303.9 284 60.9
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 2.1e-80 303.5 289 59.5
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 2.1e-80 303.5 311 58.5
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 2.8e-80 303.1 289 59.2
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 4.8e-80 302.4 292 59.6
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 4.8e-80 302.4 292 59.9
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 8.2e-80 301.6 292 59.6
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 6.9e-79 298.5 315 59.0
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 6.9e-79 298.5 304 57.9
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.9e-79 298.5 301 57.8
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 4.5e-78 295.8 307 57.0
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.0e-77 294.7 297 57.9
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.3e-77 294.3 219 70.8
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 2.2e-77 293.5 278 62.9
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 4.9e-77 292.4 289 58.8
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.4e-76 290.8 303 57.1
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 1.9e-76 290.4 307 57.3
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 5.5e-76 288.9 308 56.5
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.6e-75 287.3 304 55.3
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.6e-75 287.3 300 57.0
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 3.9e-74 282.7 219 69.9
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.1e-73 281.2 308 54.5
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.1e-73 281.2 306 55.9
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.9e-73 280.4 299 55.9
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 9.7e-73 278.1 287 58.9
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 4.8e-72 275.8 311 53.4
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.8e-71 273.9 311 53.1
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.4e-71 273.5 306 55.6
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 4.1e-71 272.7 276 58.0
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 5.3e-71 272.3 315 54.6
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.2e-70 271.2 298 52.0
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 3.4e-70 269.6 308 53.6
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 4.5e-70 269.2 309 53.1
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 7.7e-70 268.5 305 52.8
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 7.7e-70 268.5 304 52.6
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.8e-69 266.2 290 56.2
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.4e-68 264.2 193 74.1
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 1.2e-67 261.2 277 56.7
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.2e-67 261.2 277 57.0
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 7.9e-67 258.5 316 51.6
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.3e-66 256.9 289 52.9
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.0e-65 253.8 298 52.0
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 4.3e-65 252.7 287 55.1
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.2e-64 248.4 287 52.3
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 9.1e-63 245.0 420 41.7
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 2.0e-62 243.8 283 55.1
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.3e-61 241.1 301 51.2
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.7e-61 240.7 312 49.7
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.9e-60 237.3 214 61.7
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 2.5e-60 236.9 307 50.5
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.4e-58 231.1 185 68.1
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 3.0e-58 229.9 304 52.0
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.0e-58 229.9 313 47.3
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 8.8e-58 228.4 313 47.0
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 3.7e-56 223.0 297 48.1
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.8e-55 220.7 215 57.7
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.1e-55 219.9 215 57.2
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 7.0e-55 218.8 305 49.8
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 9.1e-55 218.4 277 50.5
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.5e-54 217.6 195 60.5
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.6e-54 216.9 301 49.2
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.0e-53 214.9 305 47.9
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.3e-53 214.5 205 59.0
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.0e-50 204.9 307 47.2
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.4e-50 204.5 238 52.9
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 3.0e-50 203.4 309 46.6
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 6.7e-50 202.2 310 45.5
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 6.7e-50 202.2 280 47.9
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 2.6e-49 200.3 312 45.8
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 5.7e-49 199.1 227 53.3
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.4e-49 198.7 182 61.0
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.7e-48 197.6 282 47.9
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 3.1e-47 193.4 308 47.1
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 2.0e-46 190.7 302 45.4
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 2.0e-46 190.7 302 45.4
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 2.0e-46 190.7 302 45.4
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.1e-44 184.9 295 44.4
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 1.1e-44 184.9 295 44.4
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.8e-42 177.6 250 47.6
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.3e-42 177.2 326 43.3
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 2.0e-41 174.1 323 38.7
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 1.1e-39 168.3 284 43.3
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 1.8e-39 167.5 295 41.7
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 5.3e-39 166.0 154 59.1
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 5.9e-38 162.5 183 54.6
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 1.7e-37 161.0 277 42.2
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 3.7e-32 143.3 280 40.0
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.5e-28 131.3 142 54.9
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 9.5e-28 128.6 124 61.3
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.1e-27 127.5 128 58.6
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 3.5e-22 110.2 186 43.0
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.7e-19 99.8 277 36.5
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 1.1e-15 88.6 172 39.5
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 9.2e-15 85.5 250 34.0
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.3e-13 81.6 258 34.1
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.3e-13 81.6 121 43.8
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.3e-12 76.6 144 43.8
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 2.2e-08 64.3 120 39.2
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.9e-08 63.2 102 45.1
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.4e-07 61.6 110 39.1
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 3.5e-06 57.0 51 58.8


User provided reference genes

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