Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 4.5e-286 987.3 509 100.0
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 1.8e-234 815.8 502 85.7
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 1.5e-220 769.6 504 81.3
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 1.5e-220 769.6 504 81.3
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 1.9e-212 742.7 521 77.0
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 1.4e-181 640.2 500 69.0
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 1.8e-181 639.8 507 68.6
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 2.2e-179 632.9 503 67.0
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 1.1e-178 630.6 467 70.2
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 1.0e-176 624.0 487 68.4
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 6.5e-176 621.3 510 65.5
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 5.5e-175 618.2 501 66.5
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 1.6e-174 616.7 503 66.0
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 2.7e-174 615.9 499 66.7
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 1.8e-173 613.2 504 64.9
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 3.0e-173 612.5 442 73.5
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 3.3e-172 609.0 499 64.1
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 1.3e-171 607.1 505 66.7
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 2.2e-171 606.3 505 65.5
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 4.8e-171 605.1 518 65.4
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 6.3e-171 604.7 514 63.2
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 8.2e-171 604.4 506 65.4
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 1.8e-170 603.2 508 63.6
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 2.4e-170 602.8 510 64.3
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 4.1e-170 602.1 501 64.5
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 2.0e-169 599.7 451 70.3
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 2.7e-169 599.4 503 64.6
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 1.0e-168 597.4 509 64.2
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 1.0e-168 597.4 503 64.2
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 2.2e-168 596.3 499 63.3
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 2.9e-168 595.9 502 63.3
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 9.4e-167 590.9 450 70.0
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 1.6e-166 590.1 503 64.2
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 2.1e-166 589.7 505 63.4
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 1.4e-165 587.0 502 62.7
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 1.4e-165 587.0 500 65.6
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 1.8e-165 586.6 511 63.2
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 4.0e-165 585.5 507 62.5
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 4.0e-165 585.5 503 63.4
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 4.0e-165 585.5 506 63.0
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.0e-164 583.2 522 62.3
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 2.6e-164 582.8 506 63.0
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 7.5e-164 581.3 513 61.4
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 1.7e-163 580.1 526 60.5
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 4.8e-163 578.6 523 61.2
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 4.8e-163 578.6 501 62.9
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 1.1e-162 577.4 506 63.4
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 2.4e-162 576.2 502 62.7
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 5.4e-162 575.1 501 62.5
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 7.0e-162 574.7 503 62.8
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 1.2e-161 573.9 492 64.0
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 1.6e-161 573.5 483 64.4
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 4.5e-161 572.0 503 61.4
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 1.3e-160 570.5 511 63.2
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 2.3e-160 569.7 504 61.5
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 6.6e-160 568.2 506 62.8
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 4.2e-159 565.5 543 58.6
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 6.1e-158 561.6 562 56.6
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 2.3e-157 559.7 442 69.0
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 2.0e-156 556.6 476 62.8
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 5.4e-154 548.5 448 64.7
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 7.8e-153 544.7 499 60.7
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 3.8e-152 542.3 436 67.7
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 3.8e-152 542.3 501 60.3
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.5e-151 539.7 500 59.2
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 3.3e-151 539.3 506 61.7
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 4.3e-151 538.9 498 59.8
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 4.3e-151 538.9 473 62.8
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 7.3e-151 538.1 498 59.8
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 7.3e-151 538.1 416 67.5
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 6.1e-150 535.0 497 59.2
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 3.0e-149 532.7 499 60.1
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 1.2e-148 530.8 498 59.2
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 4.4e-148 528.9 498 59.2
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 2.9e-147 526.2 458 62.0
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 8.3e-147 524.6 443 64.1
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 1.6e-145 520.4 444 62.2
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 1.6e-145 520.4 472 58.9
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 7.8e-145 518.1 347 77.8
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 2.3e-144 516.5 438 63.5
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.5e-143 513.1 431 66.1
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 2.2e-139 500.0 503 58.6
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 6.6e-136 488.4 373 70.8
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 4.9e-131 472.2 354 68.4
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 2.2e-123 446.8 510 53.7
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 9.3e-114 414.8 327 67.6
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 8.7e-112 408.3 307 66.4
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 2.4e-106 390.2 340 62.4
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 3.5e-105 386.3 342 62.0
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 1.9e-103 380.6 327 58.7
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 3.3e-103 379.8 291 67.7
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 3.8e-99 366.3 329 59.0
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 1.6e-97 360.9 496 42.1
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 3.9e-96 356.3 511 41.3
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 1.1e-87 328.2 274 64.6
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 1.8e-85 320.9 281 59.8
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 5.3e-85 319.3 271 62.7
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.9e-83 313.5 253 66.8
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 5.0e-83 312.8 268 62.7
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 1.1e-82 311.6 273 63.0
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 4.2e-82 309.7 262 64.9
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 1.8e-72 277.7 238 62.2
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 4.4e-71 273.1 238 60.9
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 1.7e-59 234.6 213 61.0
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 1.2e-36 158.7 346 36.7
arahy.Tifrunner.gnm1.ann1.5I5ID6 Arachis hypogaea HOM05D002567 ORTHO05D007435 2.6e-31 141.0 151 52.3
arahy.Tifrunner.gnm1.ann1.L0WASJ Arachis hypogaea HOM05D002567 ORTHO05D007435 4.4e-31 140.2 156 51.9
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 1.2e-28 132.1 119 58.0
MCO08G095 Micromonas commoda HOM05D002567 ORTHO05D007435 3.5e-28 130.6 335 30.4
DCAR_017872 Daucus carota HOM05D002567 ORTHO05D007435 3.9e-27 127.1 76 78.9
PRCOL_00000973 Prasinoderma coloniale HOM05D002567 ORTHO05D007435 2.5e-26 124.4 273 31.1
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 1.8e-24 118.2 76 78.9
Cfa024758 Carpinus fangiana HOM05D002567 ORTHO05D007435 1.8e-24 118.2 323 29.1
Actinidia21062 Actinidia chinensis HOM05D002567 ORTHO05D007435 4.4e-23 113.6 113 61.9
Nitab4.5_0011064g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.2e-20 105.5 108 54.6
Duzib133G1109 Durio zibethinus HOM05D002567 ORTHO05D007435 6.6e-19 99.8 104 50.0
Ciclev10006598m.g Citrus clementina HOM05D002567 ORTHO05D007435 8.6e-19 99.4 61 82.0
Duzib133G0811 Durio zibethinus HOM05D002567 ORTHO05D007435 5.6e-18 96.7 104 49.0
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 3.6e-17 94.0 92 55.4
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 4.7e-17 93.6 99 55.6
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.3e-16 91.3 95 53.7
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 2.4e-13 81.3 48 81.2
Nitab4.5_0005578g0030 Nicotiana tabacum HOM05D002567 ORTHO05D007435 9.2e-13 79.3 84 50.0
Os02g0775100 Oryza sativa ssp. japonica HOM05D000870 ORTHO05D000715 5.6e-10 70.1 318 23.9
CiPaw.14G130100 Carya illinoinensis HOM05D000870 ORTHO05D000715 7.3e-10 69.7 314 23.2
HanXRQChr13g0404201 Helianthus annuus HOM05D000870 ORTHO05D000715 2.1e-09 68.2 310 22.3
EL10Ac7g17491 Beta vulgaris HOM05D002567 ORTHO05D007435 2.8e-09 67.8 41 80.5
CiPaw.13G171300 Carya illinoinensis HOM05D000870 ORTHO05D000715 2.8e-09 67.8 314 22.3
Zm00001eb256540 Zea mays HOM05D000870 ORTHO05D000715 8.1e-09 66.2 316 23.4
AUR62012004 Chenopodium quinoa HOM05D000870 ORTHO05D000715 1.4e-08 65.5 311 23.5
SEGI_29117 Sequoiadendron giganteum HOM05D002567 ORTHO05D007435 1.8e-08 65.1 77 42.9
Sopen09g029580 Solanum pennellii HOM05D002567 ORTHO05D007435 3.1e-08 64.3 47 66.0
Ciclev10015422m.g Citrus clementina HOM05D000870 ORTHO05D000715 4.0e-08 63.9 308 22.7
PSO675G5941 Papaver somniferum HOM05D000870 ORTHO05D000715 5.2e-08 63.5 300 22.0
AUR62042552 Chenopodium quinoa HOM05D004615 ORTHO05D000004 6.8e-08 63.2 45 64.4
HanXRQChr02g0056641 Helianthus annuus HOM05D000870 ORTHO05D000715 6.8e-08 63.2 310 23.5
Sed0002216 Sechium edule HOM05D000870 ORTHO05D000715 6.8e-08 63.2 320 22.5
arahy.Tifrunner.gnm1.ann1.1E45SP Arachis hypogaea HOM05D000870 ORTHO05D000715 1.2e-07 62.4 153 28.1
arahy.Tifrunner.gnm1.ann1.3T6XNU Arachis hypogaea HOM05D000870 ORTHO05D000715 1.2e-07 62.4 153 28.1
Hund19212 Selenicereus undatus HOM05D000870 ORTHO05D000715 2.0e-07 61.6 178 27.5
AUR62015335 Chenopodium quinoa HOM05D004581 ORTHO05D006211 2.6e-07 61.2 309 22.3
Oeu024498.1 Olea europaea HOM05D000870 ORTHO05D000715 2.6e-07 61.2 315 22.9
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.4e-07 60.8 45 66.7
CsaV3_6G013480 Cucumis sativus L. HOM05D000870 ORTHO05D000715 4.4e-07 60.5 320 22.2
AL463U10030 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 5.8e-07 60.1 331 23.6
Ca_16274_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 5.8e-07 60.1 175 25.7
HanXRQChr11g0321931 Helianthus annuus HOM05D000870 ORTHO05D000715 5.8e-07 60.1 302 21.2
HanXRQChr13g0408871 Helianthus annuus HOM05D000870 ORTHO05D000715 5.8e-07 60.1 315 22.5
AL4G36840 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 7.6e-07 59.7 331 22.7
Sed0005782 Sechium edule HOM05D000870 ORTHO05D000715 7.6e-07 59.7 315 22.9
ECA236G4328 Erigeron canadensis HOM05D000870 ORTHO05D000715 9.9e-07 59.3 302 22.2
Lsat_1_v5_gn_5_86321 Lactuca sativa HOM05D000295 ORTHO05D001778 9.9e-07 59.3 36 77.8
CANSAT11G0728 Cannabis sativa HOM05D000870 ORTHO05D000715 1.7e-06 58.5 315 22.2
DCAR_009656 Daucus carota HOM05D000870 ORTHO05D000715 2.2e-06 58.2 300 22.0
Sed0011288 Sechium edule HOM05D000870 ORTHO05D000715 2.2e-06 58.2 321 21.8
MSTRG.13086 Avicennia marina HOM05D000870 ORTHO05D000715 2.9e-06 57.8 303 24.1
MSTRG.16095 Avicennia marina HOM05D000870 ORTHO05D000715 2.9e-06 57.8 302 22.5
EL10Ac3g06886 Beta vulgaris HOM05D000870 ORTHO05D000715 2.9e-06 57.8 318 21.7
Glyma.09G122600 Glycine max HOM05D000870 ORTHO05D000715 2.9e-06 57.8 147 28.6
Psat5g111840 Pisum sativum HOM05D000870 ORTHO05D000715 2.9e-06 57.8 175 25.7
ClCG02G018690 Citrullus lanatus HOM05D000870 ORTHO05D000715 3.8e-06 57.4 320 21.9
Medtr3g080090 Medicago truncatula HOM05D000870 ORTHO05D000715 3.8e-06 57.4 175 25.7
TPR.G38032 Trifolium pratense HOM05D000870 ORTHO05D000715 3.8e-06 57.4 175 25.1
Duzib268G0323 Durio zibethinus HOM05D000870 ORTHO05D000715 4.9e-06 57.0 300 21.0
Lj6g0005550 Lotus japonicus HOM05D000870 ORTHO05D000715 4.9e-06 57.0 147 27.9
arahy.Tifrunner.gnm1.ann1.66ANXA Arachis hypogaea HOM05D002567 ORTHO05D007435 6.4e-06 56.6 61 47.5
COL.COLO4_04573 Corchorus olitorius HOM05D000870 ORTHO05D000715 6.4e-06 56.6 318 21.7
SGA_v2.0_scaffold186G40190 Striga asiatica HOM05D000870 ORTHO05D000715 6.4e-06 56.6 299 23.7
AUR62040423 Chenopodium quinoa HOM05D000107 ORTHO05D000062 8.4e-06 56.2 37 67.6
DCAR_024362 Daucus carota HOM05D000870 ORTHO05D000715 8.4e-06 56.2 326 22.7
Duzib170G0097 Durio zibethinus HOM05D000870 ORTHO05D000715 8.4e-06 56.2 314 21.7
Rhsim06G0243200 Rhododendron simsii HOM05D000870 ORTHO05D000715 8.4e-06 56.2 300 21.0


User provided reference genes

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