Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0270400 Rhododendron simsii HOM05D005044 ORTHO05D006799 0.0e+00 1306.6 726 100.0
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 6.0e-191 671.8 690 59.0
CSS0043243 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D006799 1.6e-188 663.7 692 60.0
Lj1A57T46 Lonicera japonica HOM05D005044 ORTHO05D006799 2.1e-188 663.3 634 60.6
Dinv22487 Davidia involucrata HOM05D005044 ORTHO05D006799 4.0e-187 659.1 691 59.0
Dinv34561 Davidia involucrata HOM05D005044 ORTHO05D006799 5.3e-187 658.7 633 61.5
vmacro02624 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 4.2e-184 649.0 612 60.6
MSTRG.17471 Avicennia marina HOM05D005044 ORTHO05D006799 3.5e-183 646.0 697 58.0
Migut.N02179 Erythranthe guttata HOM05D005044 ORTHO05D006799 5.1e-182 642.1 696 56.6
FAN20G1248 Fragaria x ananassa HOM05D005044 ORTHO05D006799 1.1e-181 641.0 668 58.1
TAR365G0173 Trochodendron aralioides HOM05D005044 ORTHO05D006799 2.5e-181 639.8 695 57.8
QL12p042617 Quercus lobata HOM05D005044 ORTHO05D006799 1.3e-180 637.5 708 55.5
Solyc10g045390.2 Solanum lycopersicum HOM05D005044 ORTHO05D006799 2.8e-180 636.3 638 57.4
Sopen10g015430 Solanum pennellii HOM05D005044 ORTHO05D006799 1.1e-179 634.4 638 57.2
Potri.002G045900 Populus trichocarpa HOM05D005044 ORTHO05D006799 1.2e-178 630.9 642 58.3
Rhsim13G0030500 Rhododendron simsii HOM05D005044 ORTHO05D006799 1.2e-178 630.9 693 56.6
Ciclev10019527m.g Citrus clementina HOM05D005044 ORTHO05D006799 3.4e-178 629.4 642 56.9
Sc05g0001060 Simmondsia chinensis HOM05D005044 ORTHO05D006799 4.5e-178 629.0 629 58.5
Prupe.8G232900 Prunus persica HOM05D005044 ORTHO05D006799 5.8e-178 628.6 640 58.3
Phvul.001G156000 Phaseolus vulgaris HOM05D005044 ORTHO05D006799 7.6e-178 628.2 637 59.8
Atru.chr5.1554 Acer truncatum HOM05D005044 ORTHO05D006799 6.4e-177 625.2 638 56.6
RcHm_v2.0_Chr6g0289651 Rosa chinensis HOM05D005044 ORTHO05D006799 8.4e-177 624.8 640 58.9
Glyma.19G160700 Glycine max HOM05D005044 ORTHO05D006799 1.9e-176 623.6 639 58.2
MD10G1193500 Malus domestica HOM05D005044 ORTHO05D006799 1.9e-176 623.6 640 57.3
VMungo1383G1961 Vigna mungo HOM05D005044 ORTHO05D006799 3.2e-176 622.9 637 59.3
Lsat_1_v5_gn_9_8160 Lactuca sativa HOM05D005044 ORTHO05D006799 5.5e-176 622.1 693 55.1
FAN27G2477 Fragaria x ananassa HOM05D005044 ORTHO05D006799 1.2e-175 620.9 643 58.2
Glyma.03G158300 Glycine max HOM05D005044 ORTHO05D006799 1.0e-174 617.8 641 58.5
CiPaw.04G181200 Carya illinoinensis HOM05D005044 ORTHO05D006799 1.8e-174 617.1 595 58.8
Cpa.g.sc52.102 Carica papaya HOM05D005044 ORTHO05D006799 2.3e-174 616.7 709 54.9
FAN24G0661 Fragaria x ananassa HOM05D005044 ORTHO05D006799 3.9e-174 615.9 640 58.3
Haze_24523 Corylus avellana HOM05D005044 ORTHO05D006799 1.5e-173 614.0 742 52.8
FAN15G1010 Fragaria x ananassa HOM05D005044 ORTHO05D006799 1.5e-173 614.0 637 58.2
SGA_v2.0_scaffold80G25918 Striga asiatica HOM05D005044 ORTHO05D006799 3.3e-173 612.8 722 54.0
MBI04_g08415_MAGBIO Magnolia biondii HOM05D005044 ORTHO05D006799 5.6e-173 612.1 707 53.0
Psat3g061080 Pisum sativum HOM05D005044 ORTHO05D006799 1.3e-172 610.9 633 58.6
HanXRQChr10g0281481 Helianthus annuus HOM05D005044 ORTHO05D006799 1.6e-172 610.5 696 55.9
TWI75G1122 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 2.1e-172 610.1 649 57.8
Lj1g0021498 Lotus japonicus HOM05D005044 ORTHO05D006799 1.1e-171 607.8 639 55.7
TPR.G19106 Trifolium pratense HOM05D005044 ORTHO05D006799 5.3e-171 605.5 630 56.5
Lalb_Chr25g0290121 Lupinus albus HOM05D005044 ORTHO05D006799 9.0e-171 604.7 644 55.3
Gorai.007G141400 Gossypium raimondii HOM05D005044 ORTHO05D006799 1.2e-170 604.4 646 56.7
DCAR_018443 Daucus carota HOM05D005044 ORTHO05D006799 1.5e-170 604.0 633 54.7
Gohir.A11G127000 Gossypium hirsutum HOM05D005044 ORTHO05D006799 4.5e-170 602.4 646 56.3
Manes.05G083800 Manihot esculenta HOM05D005044 ORTHO05D006799 4.5e-170 602.4 650 56.2
Hund09563 Selenicereus undatus HOM05D005044 ORTHO05D006799 1.3e-169 600.9 652 57.7
Aqoxy2G03504 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 2.2e-169 600.1 704 53.1
THA.LOC104804692 Tarenaya hassleriana HOM05D005044 ORTHO05D006799 8.4e-169 598.2 645 55.7
ECA247G2181 Erigeron canadensis HOM05D005044 ORTHO05D006799 1.6e-167 594.0 694 56.2
TWI12G0479 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 2.7e-167 593.2 721 54.1
PGR044G0510 Punica granatum HOM05D005044 ORTHO05D006799 4.6e-167 592.4 644 56.4
MELO3C007015.2 Cucumis melo HOM05D005044 ORTHO05D006799 1.0e-166 591.3 651 54.7
CsaV3_6G052930 Cucumis sativus L. HOM05D005044 ORTHO05D006799 6.7e-166 588.6 651 54.5
Duzib133G0403 Durio zibethinus HOM05D005044 ORTHO05D006799 6.7e-166 588.6 652 54.8
Thecc.01G268500 Theobroma cacao HOM05D005044 ORTHO05D006799 1.9e-165 587.0 650 56.2
Eucgr.K03317 Eucalyptus grandis HOM05D005044 ORTHO05D006799 5.7e-165 585.5 642 55.1
Lalb_Chr01g0019911 Lupinus albus HOM05D005044 ORTHO05D006799 1.6e-164 583.9 634 55.8
Aa31sc64G50 Aethionema arabicum HOM05D005044 ORTHO05D006799 4.8e-164 582.4 640 52.7
Eucgr.K03316 Eucalyptus grandis HOM05D005044 ORTHO05D006799 1.8e-163 580.5 641 56.6
Medtr7g096040 Medicago truncatula HOM05D005044 ORTHO05D006799 5.9e-162 575.5 635 55.9
CDE07G1918 Ceratophyllum demersum HOM05D005044 ORTHO05D006799 2.9e-161 573.2 627 51.7
PSO832G0444 Papaver somniferum HOM05D005044 ORTHO05D006799 3.8e-161 572.8 703 50.1
ClCG01G025700 Citrullus lanatus HOM05D005044 ORTHO05D006799 1.9e-160 570.5 699 52.8
Sed0025057 Sechium edule HOM05D005044 ORTHO05D006799 3.2e-160 569.7 649 54.7
Cc01_g18890 Coffea canephora HOM05D005044 ORTHO05D006799 7.2e-160 568.5 536 57.1
AT3G54610 Arabidopsis thaliana HOM05D005044 ORTHO05D006799 2.7e-159 566.6 645 52.2
Thhalv10010247m.g Eutrema salsugineum HOM05D005044 ORTHO05D006799 2.7e-159 566.6 646 51.4
Sp5g07850 Schrenkiella parvula HOM05D005044 ORTHO05D006799 4.6e-159 565.8 645 51.0
Carub.0005s2121 Capsella rubella HOM05D005044 ORTHO05D006799 6.1e-159 565.5 644 52.2
Nn1g02531 Nelumbo nucifera HOM05D005044 ORTHO05D006799 7.9e-159 565.1 697 51.5
AL5G35690 Arabidopsis lyrata HOM05D005044 ORTHO05D006799 1.3e-158 564.3 645 52.1
PSO461G0059 Papaver somniferum HOM05D005044 ORTHO05D006799 1.8e-158 563.9 586 54.3
PSO210G1356 Papaver somniferum HOM05D005044 ORTHO05D006799 1.1e-157 561.2 637 52.9
GSVIVG01000712001 Vitis vinifera HOM05D005044 ORTHO05D006799 1.1e-157 561.2 535 57.4
PSO210G5903 Papaver somniferum HOM05D005044 ORTHO05D006799 9.7e-157 558.1 643 52.3
COL.COLO4_06089 Corchorus olitorius HOM05D005044 ORTHO05D006799 5.3e-155 552.4 667 53.5
FvH4_2g22590 Fragaria vesca HOM05D005044 ORTHO05D006799 2.0e-154 550.4 581 57.8
AUR62032265 Chenopodium quinoa HOM05D005044 ORTHO05D006799 2.5e-152 543.5 542 56.1
EL10Ac5g10465 Beta vulgaris HOM05D005044 ORTHO05D006799 1.2e-151 541.2 568 53.9
BcaB01g00175 Brassica carinata HOM05D005044 ORTHO05D006799 1.5e-149 534.3 594 51.0
Os10g0415900 Oryza sativa ssp. japonica HOM05D005044 ORTHO05D006799 2.6e-149 533.5 525 55.0
ATR0665G603 Amborella trichopoda HOM05D005044 ORTHO05D006799 4.4e-149 532.7 587 51.8
Gohir.D11G132200 Gossypium hirsutum HOM05D005044 ORTHO05D006799 4.1e-147 526.2 572 56.1
SHI09971 Sapria himalayana HOM05D005044 ORTHO05D006799 9.1e-147 525.0 622 51.1
Aqoxy5G00364 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 5.5e-144 515.8 700 50.0
SEGI_32822 Sequoiadendron giganteum HOM05D005044 ORTHO05D006799 1.4e-142 511.1 515 52.6
BcaC02g09057 Brassica carinata HOM05D005044 ORTHO05D006799 1.3e-140 504.6 640 47.5
AUR62011952 Chenopodium quinoa HOM05D005044 ORTHO05D006799 2.8e-140 503.4 455 59.3
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 6.3e-140 502.3 498 55.0
A04p05210 Brassica napus HOM05D005044 ORTHO05D006799 1.8e-139 500.7 640 47.0
BraA04t16230Z Brassica rapa HOM05D005044 ORTHO05D006799 3.1e-139 500.0 640 47.0
C04p37940 Brassica napus HOM05D005044 ORTHO05D006799 5.3e-139 499.2 599 48.9
BolC4t25370H Brassica oleracea HOM05D005044 ORTHO05D006799 5.3e-139 499.2 599 48.9
BcaB02g08448 Brassica carinata HOM05D005044 ORTHO05D006799 3.5e-138 496.5 643 47.4
Medtr8g062330 Medicago truncatula HOM05D005044 ORTHO05D006799 1.3e-137 494.6 535 52.5
Potri.005G217400 Populus trichocarpa HOM05D005044 ORTHO05D006799 1.7e-137 494.2 511 56.4
BraA04t16227Z Brassica rapa HOM05D005044 ORTHO05D006799 2.1e-135 487.3 636 45.6
A04p05170 Brassica napus HOM05D005044 ORTHO05D006799 6.1e-135 485.7 636 45.4
BcaC02g09052 Brassica carinata HOM05D005044 ORTHO05D006799 1.8e-134 484.2 640 45.8
Pp3c2_9560 Physcomitrium patens HOM05D005044 ORTHO05D006799 1.5e-133 481.1 585 46.8
Sabra05G0166600 Salix brachista HOM05D005044 ORTHO05D006799 7.5e-133 478.8 652 47.7
Ca_08641_v3 Cicer arietinum L. HOM05D005044 ORTHO05D006799 1.7e-132 477.6 512 58.2
BolC4t25361H Brassica oleracea HOM05D005044 ORTHO05D006799 2.2e-132 477.2 640 45.8
C04p37870 Brassica napus HOM05D005044 ORTHO05D006799 4.8e-132 476.1 640 45.3
Cfa002318 Carpinus fangiana HOM05D005044 ORTHO05D006799 8.2e-132 475.3 586 54.1
SMO367G0544 Selaginella moellendorffii HOM05D005044 ORTHO05D006799 3.2e-128 463.4 528 47.5
Mapoly0187s0003 Marchantia polymorpha HOM05D005044 ORTHO05D006799 2.6e-125 453.8 536 46.5
HPP92_024856 Vanilla planifolia HOM05D005044 ORTHO05D006799 9.8e-125 451.8 518 54.1
Zm00001eb223040 Zea mays HOM05D005044 ORTHO05D006799 6.3e-124 449.1 477 51.6
GSVIVG01000713001 Vitis vinifera HOM05D005044 ORTHO05D006799 1.2e-122 444.9 497 48.9
Oeu018178.1 Olea europaea HOM05D005044 ORTHO05D006799 1.7e-121 441.0 449 55.2
Manes.01G202300 Manihot esculenta HOM05D005044 ORTHO05D006799 9.8e-117 425.2 480 55.8
Nitab4.5_0000393g0110 Nicotiana tabacum HOM05D005044 ORTHO05D006799 9.8e-117 425.2 455 55.4
Nitab4.5_0004093g0010 Nicotiana tabacum HOM05D005044 ORTHO05D006799 1.7e-116 424.5 513 54.6
Peaxi162Scf01826g00015 Petunia axillaris HOM05D005044 ORTHO05D006799 5.4e-115 419.5 439 55.8
CBR_g46433 Chara braunii HOM05D005044 ORTHO05D006799 1.5e-109 401.4 517 42.7
vmacro14878 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 1.3e-108 398.3 473 51.6
unitig_22.g5955 Utricularia gibba HOM05D005044 ORTHO05D006799 1.8e-94 351.3 271 68.6
CARHR164510 Cardamine hirsuta HOM05D005044 ORTHO05D006799 2.2e-92 344.4 440 50.9
Sabra02G0036800 Salix brachista HOM05D005044 ORTHO05D006799 3.3e-88 330.5 440 46.6
unitig_22.g5954 Utricularia gibba HOM05D005044 ORTHO05D006799 2.2e-84 317.8 242 66.5
MCO07G152 Micromonas commoda HOM05D005044 ORTHO05D006799 2.3e-81 307.8 579 33.9
AagrBONN_evm.TU.Sc2ySwM_117.1037 Anthoceros agrestis HOM05D005044 ORTHO05D006799 4.4e-77 293.5 350 47.7
Cre06.g256200 Chlamydomonas reinhardtii HOM05D005044 ORTHO05D006799 4.2e-75 287.0 555 34.8
vmacro14879 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 2.1e-71 274.6 166 87.3
Sabra02G0036900 Salix brachista HOM05D005044 ORTHO05D006799 2.0e-61 241.5 219 68.9
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.7e-60 238.4 192 66.1
PRCOL_00003272 Prasinoderma coloniale HOM05D005044 ORTHO05D006799 7.9e-58 229.6 532 30.6
Cfa021827 Carpinus fangiana HOM05D005044 ORTHO05D006799 9.3e-51 206.1 509 28.5
BraA09t40212Z Brassica rapa HOM05D005044 ORTHO05D006799 4.1e-46 190.7 260 43.8
Haze_26753 Corylus avellana HOM05D005044 ORTHO05D006799 2.5e-40 171.4 509 27.5
Nitab4.5_0000393g0090 Nicotiana tabacum HOM05D005044 ORTHO05D020187 5.1e-33 147.1 107 68.2
HPP92_026599 Vanilla planifolia HOM05D005044 ORTHO05D006799 1.0e-28 132.9 100 65.0
FAN07G0333 Fragaria x ananassa HOM05D005044 ORTHO05D020615 1.4e-22 112.5 92 65.2
BolC9t54871H Brassica oleracea HOM05D005044 ORTHO05D006799 1.3e-20 105.9 217 41.0
FAN24G2420 Fragaria x ananassa HOM05D005044 ORTHO05D020615 2.1e-18 98.6 101 55.4
BcaC04g22409 Brassica carinata HOM05D005044 ORTHO05D000065 6.1e-18 97.1 217 38.7
C09p19690 Brassica napus HOM05D005044 ORTHO05D006799 4.0e-17 94.4 216 38.4
Nitab4.5_0004093g0020 Nicotiana tabacum HOM05D005044 ORTHO05D020187 1.3e-15 89.4 47 89.4
A09p47550 Brassica napus HOM05D005044 ORTHO05D006799 2.8e-15 88.2 93 46.2
Peaxi162Scf01826g00011 Petunia axillaris HOM05D005044 ORTHO05D020187 2.8e-15 88.2 44 93.2
A09p47560 Brassica napus HOM05D005044 ORTHO05D020187 3.1e-14 84.7 58 69.0
A02p37520 Brassica napus HOM05D005044 ORTHO05D020187 1.6e-13 82.4 47 76.6
FvH4_4g08670 Fragaria vesca HOM05D005044 ORTHO05D006799 3.8e-12 77.8 54 68.5
Lsat_1_v5_gn_2_63120 Lactuca sativa HOM05D005044 ORTHO05D006799 1.9e-11 75.5 48 72.9
BcaC03g14692 Brassica carinata HOM05D000313 ORTHO05D000065 1.4e-09 69.3 186 36.0
Dinv08224 Davidia involucrata HOM05D051781 ORTHO05D178724 8.8e-09 66.6 32 90.6
MSTRG.24076 Avicennia marina HOM05D000336 ORTHO05D002301 1.7e-07 62.4 231 28.6
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.8e-07 61.6 183 40.4
Mapoly0004s0082 Marchantia polymorpha HOM05D001078 ORTHO05D000927 2.8e-07 61.6 93 38.7
Pp3c5_1040 Physcomitrium patens HOM05D001078 ORTHO05D000927 8.3e-07 60.1 93 38.7
Manes.15G116300 Manihot esculenta HOM05D000336 ORTHO05D000593 1.1e-06 59.7 139 32.4
Glyma.18G095400 Glycine max HOM05D001078 ORTHO05D000927 1.4e-06 59.3 93 35.5
Cfa010551 Carpinus fangiana HOM05D000336 ORTHO05D000593 3.1e-06 58.2 140 32.9
TPR.G38084 Trifolium pratense HOM05D001078 ORTHO05D000927 3.1e-06 58.2 94 35.1
CSS0023052 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D020187 4.1e-06 57.8 61 52.5
Ah.11g050050 Amaranthus hybridus HOM05D005044 ORTHO05D060978 5.4e-06 57.4 92 45.7
DCAR_021761 Daucus carota HOM05D000336 ORTHO05D002301 5.4e-06 57.4 140 30.7
Zm00001eb320910 Zea mays HOM05D001078 ORTHO05D000927 5.4e-06 57.4 93 36.6
AagrBONN_evm.TU.Sc2ySwM_362.693 Anthoceros agrestis HOM05D001078 ORTHO05D000927 7.0e-06 57.0 93 37.6
CAN.G257.98 Capsicum annuum HOM05D000336 ORTHO05D000593 7.0e-06 57.0 122 33.6
ECA246G5337 Erigeron canadensis HOM05D000336 ORTHO05D002301 7.0e-06 57.0 117 33.3


User provided reference genes

Program Settings