Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 5.5e-86 320.9 155 100.0
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 3.6e-61 238.4 152 78.9
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 2.4e-57 225.7 144 77.1
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 1.5e-54 216.5 144 74.3
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 8.1e-53 210.7 141 75.2
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 1.4e-52 209.9 141 71.6
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 1.4e-52 209.9 145 70.3
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 1.4e-52 209.9 145 70.3
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 1.2e-51 206.8 137 68.6
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 1.2e-51 206.8 153 66.0
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 1.5e-51 206.5 152 64.5
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 1.5e-51 206.5 124 79.0
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.5e-51 206.5 143 70.6
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 4.4e-51 204.9 157 65.6
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 1.3e-50 203.4 126 73.8
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 1.7e-50 203.0 141 65.2
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 2.9e-50 202.2 141 69.5
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 4.9e-50 201.4 154 65.6
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 6.4e-50 201.1 143 69.9
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 1.4e-49 199.9 168 61.3
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 1.4e-49 199.9 161 63.4
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 4.2e-49 198.4 161 62.7
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 4.2e-49 198.4 157 66.2
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 5.4e-49 198.0 141 69.5
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 2.7e-48 195.7 122 73.8
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 2.3e-47 192.6 141 67.4
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 2.3e-47 192.6 155 65.8
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 3.9e-47 191.8 143 66.4
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 6.6e-47 191.0 124 75.0
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 6.6e-47 191.0 126 73.0
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 1.1e-46 190.3 141 67.4
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 1.5e-46 189.9 144 67.4
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 1.5e-46 189.9 148 63.5
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 1.9e-46 189.5 138 68.8
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.5e-46 189.1 138 68.1
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 1.3e-45 186.8 139 66.2
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 1.6e-45 186.4 135 65.2
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 2.1e-45 186.0 139 65.5
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 2.8e-45 185.7 164 59.8
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 3.6e-45 185.3 154 61.0
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 3.6e-45 185.3 150 64.0
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 4.8e-45 184.9 138 62.3
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 6.2e-45 184.5 127 68.5
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 8.1e-45 184.1 137 64.2
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 1.1e-44 183.7 140 62.9
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 1.1e-44 183.7 148 61.5
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 1.4e-44 183.3 142 64.8
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 1.4e-44 183.3 151 62.3
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 3.1e-44 182.2 125 68.8
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 3.1e-44 182.2 144 62.5
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 6.9e-44 181.0 142 67.6
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 2.0e-43 179.5 139 62.6
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 2.6e-43 179.1 155 61.3
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 2.6e-43 179.1 141 62.4
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 3.4e-43 178.7 145 63.4
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 4.4e-43 178.3 124 70.2
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 5.8e-43 177.9 151 58.9
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 9.9e-43 177.2 127 69.3
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 2.2e-42 176.0 145 62.8
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 3.8e-42 175.3 131 64.9
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 3.8e-42 175.3 131 64.9
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 4.9e-42 174.9 158 58.2
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 6.4e-42 174.5 143 60.1
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 8.4e-42 174.1 145 61.4
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 8.4e-42 174.1 160 60.0
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 1.4e-41 173.3 147 58.5
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 1.4e-41 173.3 143 62.9
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 1.6e-40 169.9 143 57.3
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 2.7e-40 169.1 152 59.9
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 4.6e-40 168.3 150 59.3
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 7.8e-40 167.5 152 58.6
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 1.0e-39 167.2 152 57.9
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 1.0e-39 167.2 142 59.9
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 1.7e-39 166.4 154 56.5
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 3.0e-39 165.6 141 58.2
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 3.0e-39 165.6 127 63.0
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 3.9e-39 165.2 142 57.7
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 5.1e-39 164.9 149 58.4
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 5.1e-39 164.9 140 59.3
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 1.5e-38 163.3 146 59.6
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 1.9e-38 162.9 143 58.0
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 1.9e-38 162.9 147 57.8
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 3.3e-38 162.2 146 58.9
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 3.3e-38 162.2 146 58.9
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 4.3e-38 161.8 144 56.9
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.3e-37 160.2 148 58.8
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.3e-37 160.2 148 58.8
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 1.3e-37 160.2 147 55.8
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 2.8e-37 159.1 146 58.9
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 4.8e-37 158.3 109 67.9
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 4.0e-36 155.2 106 70.8
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 9.0e-36 154.1 146 55.5
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 1.5e-35 153.3 113 69.0
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 1.5e-35 153.3 123 59.3
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 2.6e-35 152.5 107 68.2
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 2.9e-34 149.1 147 55.8
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 1.4e-33 146.7 125 56.8
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 3.3e-30 135.6 160 47.5
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 6.9e-28 127.9 97 66.0
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 3.2e-25 119.0 84 70.2
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 6.0e-24 114.8 112 49.1
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 7.9e-16 87.8 77 59.7
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 7.4e-14 81.3 67 61.2
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 3.7e-13 79.0 57 70.2
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 3.7e-13 79.0 57 68.4
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 6.3e-13 78.2 109 38.5
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 2.9e-10 69.3 105 40.0
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 8.5e-10 67.8 112 30.4
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 5.5e-09 65.1 112 34.8
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.8e-07 60.1 112 31.2
ATR0414G002 Amborella trichopoda HOM05D007363 ORTHO05D009018 6.7e-07 58.2 142 31.0
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 2.5e-06 56.2 88 42.0
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 5.7e-06 55.1 89 37.1
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 5.7e-06 55.1 89 37.1
Pp3c7_26210 Physcomitrium patens HOM05D021038 ORTHO05D009018 5.7e-06 55.1 109 32.1
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 7.4e-06 54.7 87 36.8


User provided reference genes

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