Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 6.3e-85 317.4 159 100.0
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 2.2e-74 282.3 154 91.6
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 2.9e-66 255.4 153 83.0
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.9e-65 252.7 154 83.8
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.2e-64 250.0 153 81.0
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.2e-64 250.0 154 82.5
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 4.4e-62 241.5 152 80.3
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 9.8e-62 240.4 153 79.1
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 2.2e-61 239.2 154 77.9
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 2.2e-61 239.2 154 79.2
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 3.7e-61 238.4 153 79.7
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 5.4e-60 234.6 154 78.6
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 9.1e-60 233.8 151 76.8
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.2e-59 233.4 152 77.0
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 1.6e-59 233.0 150 76.7
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 1.6e-59 233.0 150 76.7
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.6e-59 233.0 152 77.0
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 2.0e-59 232.6 153 77.1
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 2.0e-59 232.6 150 78.0
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 2.7e-59 232.3 154 76.6
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 2.7e-59 232.3 152 77.6
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 4.5e-59 231.5 151 75.5
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 4.5e-59 231.5 151 74.8
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 5.9e-59 231.1 152 74.3
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 5.9e-59 231.1 158 75.3
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 5.9e-59 231.1 154 76.0
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 5.9e-59 231.1 151 76.2
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 5.9e-59 231.1 151 74.2
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 1.0e-58 230.3 152 74.3
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 1.0e-58 230.3 154 76.0
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 1.0e-58 230.3 151 73.5
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 1.0e-58 230.3 152 77.6
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 1.3e-58 229.9 152 75.7
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 2.3e-58 229.2 158 74.7
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 2.3e-58 229.2 152 77.0
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 2.9e-58 228.8 152 77.0
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 2.9e-58 228.8 152 75.0
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 3.8e-58 228.4 147 76.9
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 3.8e-58 228.4 152 75.0
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 3.8e-58 228.4 152 75.0
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.5e-57 226.5 150 74.7
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 1.9e-57 226.1 154 75.3
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 2.5e-57 225.7 151 72.8
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 2.5e-57 225.7 151 72.8
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 2.5e-57 225.7 155 72.9
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 3.3e-57 225.3 149 73.8
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 3.3e-57 225.3 155 72.9
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 3.3e-57 225.3 152 74.3
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 4.2e-57 224.9 151 73.5
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 5.5e-57 224.6 151 74.2
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 5.5e-57 224.6 150 74.0
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 7.2e-57 224.2 156 73.7
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 7.2e-57 224.2 151 75.5
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 7.2e-57 224.2 151 73.5
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 9.5e-57 223.8 151 72.8
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 9.5e-57 223.8 149 72.5
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 9.5e-57 223.8 151 72.2
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 1.2e-56 223.4 151 74.2
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 2.8e-56 222.2 157 73.2
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 3.6e-56 221.9 147 76.2
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 3.6e-56 221.9 151 72.8
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 4.7e-56 221.5 154 72.1
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 8.0e-56 220.7 157 74.5
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 1.4e-55 219.9 155 72.3
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 2.3e-55 219.2 154 73.4
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 2.3e-55 219.2 151 70.9
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 8.9e-55 217.2 156 69.9
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 1.2e-54 216.9 154 70.8
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 1.2e-54 216.9 150 70.7
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 1.5e-54 216.5 145 74.5
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 1.5e-54 216.5 150 72.0
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 2.0e-54 216.1 149 75.2
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 2.0e-54 216.1 144 75.0
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 2.0e-54 216.1 152 70.4
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 2.6e-54 215.7 143 74.8
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 3.4e-54 215.3 152 73.0
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 4.4e-54 214.9 116 89.7
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 7.5e-54 214.2 151 69.5
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 7.5e-54 214.2 155 71.0
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 9.8e-54 213.8 144 74.3
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 2.9e-53 212.2 145 71.7
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 3.7e-53 211.8 144 72.2
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 4.9e-53 211.5 144 75.0
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 1.1e-52 210.3 115 85.2
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 1.1e-52 210.3 161 68.9
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 1.8e-52 209.5 152 66.4
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 2.4e-52 209.1 154 68.8
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 2.4e-52 209.1 151 67.5
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 3.2e-52 208.8 151 66.9
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 3.2e-52 208.8 151 66.9
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 4.1e-52 208.4 154 68.8
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 4.1e-52 208.4 154 68.8
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 5.4e-52 208.0 139 74.1
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 5.4e-52 208.0 116 86.2
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 7.0e-52 207.6 151 67.5
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 9.2e-52 207.2 147 70.7
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 9.2e-52 207.2 152 69.1
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 1.2e-51 206.8 147 70.1
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 1.6e-51 206.5 145 69.0
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 1.6e-51 206.5 146 68.5
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 2.7e-51 205.7 155 66.5
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 5.9e-51 204.5 118 83.9
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 1.0e-50 203.8 144 67.4
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 1.3e-50 203.4 146 69.2
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 2.9e-50 202.2 115 84.3
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 3.9e-50 201.8 145 67.6
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 5.0e-50 201.4 155 64.5
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 6.6e-50 201.1 152 65.1
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 1.6e-48 196.4 151 65.6
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 2.1e-48 196.1 115 78.3
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 1.2e-46 190.3 136 72.1
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 4.9e-45 184.9 154 62.3
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 2.0e-43 179.5 159 57.9
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 6.6e-42 174.5 161 56.5
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.1e-41 173.7 149 59.1
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 4.3e-41 171.8 115 72.2
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 2.9e-37 159.1 151 58.3
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 4.6e-35 151.8 110 60.9
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 8.6e-34 147.5 121 63.6
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 1.9e-33 146.4 109 60.6
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 1.9e-33 146.4 114 58.8
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 3.3e-33 145.6 107 60.7
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.3e-31 139.4 147 55.1
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 1.4e-23 113.6 59 89.8
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 1.4e-23 113.6 59 89.8
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 4.2e-20 102.1 86 66.3
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 9.6e-17 90.9 72 63.9
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 6.2e-16 88.2 49 83.7
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 7.6e-14 81.3 75 58.7
Zm00001eb141840 Zea mays HOM05D042765 ORTHO05D443703 7.6e-06 54.7 31 83.9


User provided reference genes

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