Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0253000 Rhododendron simsii HOM05D003583 ORTHO05D004169 2.5e-52 208.4 95 100.0
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 7.2e-28 127.1 62 93.5
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 2.0e-25 119.0 60 88.3
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 1.4e-23 112.8 78 69.2
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 5.3e-23 110.9 60 85.0
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 5.3e-23 110.9 60 85.0
Actinidia30051 Actinidia chinensis HOM05D003583 ORTHO05D004169 7.0e-23 110.5 60 85.0
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 7.0e-23 110.5 60 85.0
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 7.0e-23 110.5 60 85.0
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 1.6e-22 109.4 60 83.3
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 2.0e-22 109.0 60 83.3
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 2.0e-22 109.0 60 83.3
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 2.7e-22 108.6 60 83.3
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 2.7e-22 108.6 60 83.3
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 2.7e-22 108.6 60 83.3
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 2.7e-22 108.6 60 83.3
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 2.7e-22 108.6 60 83.3
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 3.5e-22 108.2 60 81.7
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.5e-22 108.2 60 81.7
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.5e-22 108.2 60 81.7
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 3.5e-22 108.2 60 81.7
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 3.5e-22 108.2 60 81.7
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 4.5e-22 107.8 78 66.7
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 4.5e-22 107.8 60 81.7
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 5.9e-22 107.5 60 81.7
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 5.9e-22 107.5 60 81.7
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 5.9e-22 107.5 60 81.7
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 5.9e-22 107.5 60 81.7
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 5.9e-22 107.5 60 81.7
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 5.9e-22 107.5 78 67.9
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 5.9e-22 107.5 60 81.7
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 5.9e-22 107.5 60 81.7
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 5.9e-22 107.5 60 81.7
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 7.7e-22 107.1 60 80.0
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.3e-21 106.3 60 80.0
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 1.3e-21 106.3 60 80.0
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 2.2e-21 105.5 60 81.7
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 2.2e-21 105.5 60 81.7
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 2.9e-21 105.1 60 81.7
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 2.9e-21 105.1 60 78.3
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 2.9e-21 105.1 60 80.0
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 3.8e-21 104.8 60 80.0
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 3.8e-21 104.8 60 80.0
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 3.8e-21 104.8 60 80.0
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 3.8e-21 104.8 60 80.0
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 3.8e-21 104.8 60 80.0
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 3.8e-21 104.8 60 80.0
Ca_03474_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 5.0e-21 104.4 60 80.0
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 5.0e-21 104.4 60 80.0
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 5.0e-21 104.4 60 80.0
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 6.5e-21 104.0 60 80.0
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 6.5e-21 104.0 60 80.0
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 8.5e-21 103.6 60 78.3
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 8.5e-21 103.6 60 78.3
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.1e-20 103.2 60 78.3
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 1.5e-20 102.8 53 84.9
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 1.5e-20 102.8 60 80.0
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 1.5e-20 102.8 60 80.0
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 1.5e-20 102.8 62 77.4
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 1.9e-20 102.4 62 77.4
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 1.9e-20 102.4 78 62.8
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 1.9e-20 102.4 78 61.5
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 2.5e-20 102.1 60 78.3
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 2.5e-20 102.1 60 78.3
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 2.5e-20 102.1 60 76.7
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 2.5e-20 102.1 60 78.3
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 3.2e-20 101.7 78 64.1
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 3.2e-20 101.7 60 75.0
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 3.2e-20 101.7 60 80.0
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 3.2e-20 101.7 60 78.3
Medtr7g055863 Medicago truncatula HOM05D003583 ORTHO05D004169 5.5e-20 100.9 60 78.3
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 5.5e-20 100.9 60 76.7
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 7.2e-20 100.5 60 75.0
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 9.4e-20 100.1 60 76.7
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 9.4e-20 100.1 60 76.7
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 9.4e-20 100.1 60 76.7
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 9.4e-20 100.1 60 76.7
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 9.4e-20 100.1 60 76.7
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 9.4e-20 100.1 60 76.7
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 9.4e-20 100.1 60 76.7
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 9.4e-20 100.1 60 76.7
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 9.4e-20 100.1 78 61.5
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.6e-19 99.4 50 86.0
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 1.6e-19 99.4 60 76.7
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 1.6e-19 99.4 60 76.7
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 1.6e-19 99.4 60 76.7
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 1.6e-19 99.4 60 75.0
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 1.6e-19 99.4 60 73.3
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 2.1e-19 99.0 60 76.7
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 2.1e-19 99.0 60 76.7
Nn1g07991 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.1e-19 99.0 60 75.0
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 3.6e-19 98.2 60 73.3
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 4.7e-19 97.8 60 75.0
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 6.1e-19 97.4 60 73.3
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 6.1e-19 97.4 60 71.7
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 6.1e-19 97.4 60 75.0
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 6.1e-19 97.4 60 75.0
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 8.0e-19 97.1 60 73.3
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 1.0e-18 96.7 60 75.0
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 1.4e-18 96.3 60 75.0
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 1.8e-18 95.9 60 75.0
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.8e-18 95.9 60 73.3
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 2.3e-18 95.5 60 75.0
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 2.3e-18 95.5 60 73.3
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.3e-18 95.5 60 71.7
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.3e-18 95.5 60 71.7
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.3e-18 95.5 60 71.7
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 3.0e-18 95.1 60 73.3
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 5.2e-18 94.4 60 71.7
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 8.8e-18 93.6 53 77.4
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 8.8e-18 93.6 53 77.4
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 8.8e-18 93.6 53 77.4
Sp2g19040 Schrenkiella parvula HOM05D003583 ORTHO05D004169 8.8e-18 93.6 60 73.3
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 1.2e-17 93.2 60 73.3
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 1.5e-17 92.8 95 50.5
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 2.0e-17 92.4 60 73.3
MBI11_g07418_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 2.0e-17 92.4 60 70.0
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 2.0e-17 92.4 60 71.7
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 2.6e-17 92.0 78 57.7
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 2.6e-17 92.0 60 71.7
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 9.8e-17 90.1 60 71.7
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 1.3e-16 89.7 60 68.3
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 1.7e-16 89.4 95 51.6
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 2.8e-16 88.6 60 70.0
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 8.3e-16 87.0 60 61.7
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 8.3e-16 87.0 78 53.8
CDE06G1446 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 5.4e-15 84.3 60 70.0
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.2e-14 83.2 78 51.3
Os11g0463600 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 2.7e-14 82.0 62 59.7
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 8.6e-13 77.0 60 61.7
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 1.5e-12 76.3 96 45.8
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 1.5e-12 76.3 96 45.8
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 3.2e-12 75.1 60 58.3
Lalb_Chr19g0125851 Lupinus albus HOM05D003583 ORTHO05D004169 1.0e-10 70.1 47 63.8
Oeu029228.1 Olea europaea HOM05D001181 ORTHO05D001678 3.0e-10 68.6 39 74.4
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 8.8e-10 67.0 62 50.0
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 5.7e-09 64.3 62 45.2
BcaB08g36000 Brassica carinata HOM05D003583 ORTHO05D004169 2.2e-08 62.4 39 69.2
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 1.1e-07 60.1 35 71.4
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 9.2e-07 57.0 42 57.1
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 9.2e-07 57.0 42 57.1
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.0e-06 55.8 33 72.7


User provided reference genes

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