Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 3.3e-133 478.4 246 100.0
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 6.3e-116 421.0 248 89.1
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 9.7e-101 370.5 246 80.1
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 2.2e-97 359.4 245 76.7
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 3.1e-91 339.0 240 73.3
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 1.2e-90 337.0 244 72.5
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 2.2e-89 332.8 239 72.4
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 3.8e-89 332.0 243 70.8
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 6.5e-89 331.3 243 74.5
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 2.6e-85 319.3 243 67.5
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 5.7e-85 318.2 243 68.7
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 9.7e-85 317.4 244 68.9
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 1.3e-84 317.0 227 70.5
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.3e-84 317.0 244 68.9
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 3.7e-84 315.5 246 67.5
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 1.4e-83 313.5 246 66.7
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 3.1e-83 312.4 243 67.1
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 4.1e-83 312.0 245 65.7
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 5.3e-83 311.6 244 66.4
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 5.3e-83 311.6 244 65.6
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.6e-82 310.1 244 65.6
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.6e-82 310.1 244 65.6
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 2.7e-82 309.3 239 67.4
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 3.5e-82 308.9 247 66.8
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 3.5e-82 308.9 244 66.0
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 4.5e-82 308.5 244 66.4
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 5.9e-82 308.1 246 66.7
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 2.2e-81 306.2 234 66.7
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 2.2e-81 306.2 244 66.8
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 2.2e-81 306.2 194 76.3
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 2.9e-81 305.8 247 66.8
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 5.0e-81 305.1 263 62.7
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 6.5e-81 304.7 245 65.3
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 6.5e-81 304.7 245 66.5
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 6.5e-81 304.7 240 68.3
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 5.5e-80 301.6 245 65.3
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 5.5e-80 301.6 245 65.3
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 7.2e-80 301.2 244 66.0
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 9.4e-80 300.8 234 66.2
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 1.2e-79 300.4 243 69.5
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 1.2e-79 300.4 312 57.1
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 3.6e-79 298.9 244 64.8
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 8.0e-79 297.7 244 66.0
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 8.0e-79 297.7 245 66.5
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 1.0e-78 297.4 243 66.3
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 2.3e-78 296.2 243 65.8
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 3.0e-78 295.8 244 64.3
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 3.0e-78 295.8 246 64.2
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 2.0e-77 293.1 254 62.6
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.0e-77 293.1 243 65.4
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 1.7e-76 290.0 243 64.2
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 2.2e-76 289.7 230 64.3
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 4.8e-76 288.5 196 73.5
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 8.3e-76 287.7 228 64.0
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 4.1e-75 285.4 229 63.8
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 4.1e-75 285.4 239 64.4
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 1.6e-74 283.5 193 72.0
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 1.6e-74 283.5 247 61.5
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 2.0e-74 283.1 241 63.1
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 2.7e-74 282.7 257 61.5
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 4.5e-74 282.0 245 62.0
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 5.9e-74 281.6 241 61.8
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 5.9e-74 281.6 241 61.8
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 5.9e-74 281.6 241 62.7
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 7.7e-74 281.2 215 68.4
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 1.0e-73 280.8 244 63.1
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 1.3e-73 280.4 240 63.3
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 1.7e-73 280.0 244 62.7
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 1.7e-73 280.0 241 62.7
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 1.7e-73 280.0 193 71.5
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 3.8e-73 278.9 228 62.3
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 6.5e-73 278.1 244 61.5
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 1.5e-72 276.9 224 65.6
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 5.5e-72 275.0 264 59.5
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 6.8e-70 268.1 211 66.4
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 2.0e-69 266.5 220 65.0
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 2.2e-68 263.1 183 70.5
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 3.7e-68 262.3 245 59.2
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 6.3e-68 261.5 175 73.1
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 1.6e-66 256.9 279 53.8
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 2.7e-66 256.1 243 57.6
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 3.5e-66 255.8 244 60.7
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 5.9e-66 255.0 204 66.7
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 5.9e-66 255.0 251 56.6
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 7.7e-66 254.6 185 69.2
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 3.8e-65 252.3 166 79.5
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 6.6e-65 251.5 221 58.8
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 8.6e-65 251.1 161 75.8
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 2.8e-63 246.1 198 68.2
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 5.7e-61 238.4 167 75.4
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 9.8e-61 237.7 171 73.1
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 9.8e-61 237.7 244 56.6
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 6.4e-60 235.0 164 72.6
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 3.2e-59 232.6 185 69.2
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 3.0e-57 226.1 176 67.6
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 1.2e-42 177.6 136 64.0
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 3.5e-42 176.0 109 75.2
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 2.3e-38 163.3 134 62.7
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 1.3e-33 147.5 94 74.5
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 1.1e-24 117.9 82 69.5
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 1.4e-22 110.9 110 58.2
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.5e-21 107.5 79 68.4
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 4.6e-18 95.9 54 83.3
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 1.0e-17 94.7 97 50.5
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 4.3e-16 89.4 61 70.5
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 9.6e-16 88.2 77 58.4
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 8.7e-09 65.1 73 49.3
Potri.007G083100 Populus trichocarpa HOM05D007255 ORTHO05D009052 2.8e-07 60.1 36 77.8


User provided reference genes

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