Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0243500 Rhododendron simsii HOM05D007641 ORTHO05D007630 0.0e+00 1620.1 788 100.0
vmacro14640 Vaccinium macrocarpon HOM05D007641 ORTHO05D007630 1.0e-260 903.7 670 70.0
Actinidia34497 Actinidia chinensis HOM05D007641 ORTHO05D007630 2.9e-215 752.7 715 57.1
Dinv28733 Davidia involucrata HOM05D007641 ORTHO05D007630 7.3e-158 562.0 712 46.9
QL01p024477 Quercus lobata HOM05D007641 ORTHO05D007630 6.1e-96 356.3 721 35.5
Atru.chr10.2293 Acer truncatum HOM05D007641 ORTHO05D007630 1.3e-93 348.6 719 36.3
Haze_24474 Corylus avellana HOM05D007641 ORTHO05D007630 5.0e-90 336.7 645 35.2
Hma1.2p1_0119F.1_g056956 Hydrangea macrophylla HOM05D007641 ORTHO05D007630 1.8e-87 328.2 458 43.0
CiPaw.13G063300 Carya illinoinensis HOM05D007641 ORTHO05D007630 2.4e-84 317.8 721 33.4
Thecc.09G364100 Theobroma cacao HOM05D007641 ORTHO05D007630 1.9e-73 281.6 724 32.6
Sabra13G0126700 Salix brachista HOM05D007641 ORTHO05D002352 3.2e-73 280.8 724 31.9
Potri.013G157800 Populus trichocarpa HOM05D007641 ORTHO05D007630 6.3e-69 266.5 721 33.6
Aqoxy1G01263 Aquilegia oxysepala HOM05D007641 ORTHO05D007630 1.2e-56 225.7 738 29.1
Manes.02G212232 Manihot esculenta HOM05D007641 ORTHO05D007630 2.3e-55 221.5 691 29.8
Duzib168G1492 Durio zibethinus HOM05D007641 ORTHO05D007630 8.8e-55 219.5 686 28.6
RcHm_v2.0_Chr5g0073231 Rosa chinensis HOM05D007641 ORTHO05D007630 3.4e-54 217.6 713 29.0
Nn2g10289 Nelumbo nucifera HOM05D007641 ORTHO05D007630 7.5e-54 216.5 670 29.7
TAR633G1590 Trochodendron aralioides HOM05D007641 ORTHO05D007630 2.4e-52 211.5 365 38.1
Prupe.6G040800 Prunus persica HOM05D007641 ORTHO05D007630 3.1e-52 211.1 670 29.9
CANSAT54G2173 Cannabis sativa HOM05D007641 ORTHO05D007630 5.4e-52 210.3 708 28.7
COL.COLO4_11217 Corchorus olitorius HOM05D007641 ORTHO05D007630 1.4e-47 195.7 750 27.5
MBI15_g36478_MAGBIO Magnolia biondii HOM05D007641 ORTHO05D007630 6.8e-47 193.4 663 27.5
TWI79G1607 Tripterygium wilfordii HOM05D007641 ORTHO05D007630 9.8e-46 189.5 717 28.3
Gorai.004G000600 Gossypium raimondii HOM05D007641 ORTHO05D007630 1.7e-45 188.7 635 28.5
Gohir.D08G007350 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.7e-43 181.4 635 28.0
Oeu064683.1 Olea europaea HOM05D007641 ORTHO05D007630 7.8e-43 179.9 701 31.0
Gohir.A08G000032 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.5e-41 175.6 699 26.5
Gohir.D12G000401 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.9e-41 175.3 688 26.7
Lj2A1102G26 Lonicera japonica HOM05D007641 ORTHO05D007630 6.2e-40 170.2 287 38.3
FAN25G3378 Fragaria x ananassa HOM05D007641 ORTHO05D007630 2.0e-38 165.2 718 27.6
Gorai.012G000300 Gossypium raimondii HOM05D007641 ORTHO05D007630 4.9e-37 160.6 431 31.3
Ciclev10001550m.g Citrus clementina HOM05D007641 ORTHO05D007630 6.4e-37 160.2 366 34.7
FvH4_3g40550 Fragaria vesca HOM05D007641 ORTHO05D007630 8.3e-37 159.8 693 27.4
FAN16G1217 Fragaria x ananassa HOM05D007641 ORTHO05D007630 1.1e-36 159.5 693 26.8
FAN11G1956 Fragaria x ananassa HOM05D007641 ORTHO05D007630 1.4e-36 159.1 691 27.1
Gohir.1Z049529 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.2e-35 156.0 389 31.6
Sc23g0005090 Simmondsia chinensis HOM05D007641 ORTHO05D007630 2.3e-34 151.8 706 25.1
arahy.Tifrunner.gnm1.ann1.4PHV2I Arachis hypogaea HOM05D007641 ORTHO05D007630 1.9e-33 148.7 727 26.3
Glyma.18G052000 Glycine max HOM05D007641 ORTHO05D007630 5.6e-33 147.1 727 26.3
Sopen09g001120 Solanum pennellii HOM05D014625 ORTHO05D007630 2.8e-32 144.8 731 26.0
MELO3C019578.2 Cucumis melo HOM05D007641 ORTHO05D007630 6.2e-32 143.7 704 26.0
Lalb_Chr18g0054201 Lupinus albus HOM05D007641 ORTHO05D007630 2.3e-31 141.7 673 25.7
ClCG02G019020 Citrullus lanatus HOM05D007641 ORTHO05D007630 4.0e-31 141.0 682 26.5
TAR636G3352 Trochodendron aralioides HOM05D007641 ORTHO05D007630 5.2e-31 140.6 388 31.2
Solyc09g005140.2 Solanum lycopersicum HOM05D014625 ORTHO05D007630 3.4e-30 137.9 726 25.9
Ciclev10004023m.g Citrus clementina HOM05D007641 ORTHO05D007630 4.4e-30 137.5 200 42.0
Psat5g147960 Pisum sativum HOM05D007641 ORTHO05D007630 2.2e-29 135.2 743 27.2
Medtr3g467390 Medicago truncatula HOM05D007641 ORTHO05D007630 2.9e-29 134.8 718 27.7
DCAR_018642 Daucus carota HOM05D007641 ORTHO05D007630 3.7e-29 134.4 662 25.2
Migut.D00817 Erythranthe guttata HOM05D007641 ORTHO05D007630 3.7e-29 134.4 368 30.4
Phvul.006G079400 Phaseolus vulgaris HOM05D007641 ORTHO05D007630 5.4e-28 130.6 722 25.8
TPR.G13882 Trifolium pratense HOM05D007641 ORTHO05D007630 5.4e-28 130.6 731 26.5
Peaxi162Scf00605g00515 Petunia axillaris HOM05D014625 ORTHO05D007630 1.6e-27 129.0 741 24.2
Sed0007856 Sechium edule HOM05D007641 ORTHO05D007630 1.2e-24 119.4 709 24.8
HanXRQChr08g0230341 Helianthus annuus HOM05D007641 ORTHO05D007630 6.2e-24 117.1 404 27.0
Gohir.1Z049434 Gossypium hirsutum HOM05D007641 ORTHO05D007630 5.2e-23 114.0 413 27.1
PSO170G4823 Papaver somniferum HOM05D007641 ORTHO05D007630 5.2e-23 114.0 754 24.1
VMungo0540G0343 Vigna mungo HOM05D007641 ORTHO05D007630 9.9e-22 109.8 694 24.1
Lj6g0005873 Lotus japonicus HOM05D007641 ORTHO05D007630 1.7e-21 109.0 725 25.8
ECA247G3209 Erigeron canadensis HOM05D007641 ORTHO05D007630 3.8e-21 107.8 540 24.6
arahy.Tifrunner.gnm1.ann1.F8RHVN Arachis hypogaea HOM05D007641 ORTHO05D007630 4.9e-21 107.5 637 25.3
Lsat_1_v5_gn_9_13760 Lactuca sativa HOM05D007641 ORTHO05D007630 3.2e-20 104.8 102 53.9
SGA_v2.0_scaffold20G09288 Striga asiatica HOM05D007641 ORTHO05D007630 5.4e-20 104.0 220 32.7
CsaV3_6G013130 Cucumis sativus L. HOM05D007641 ORTHO05D007630 7.1e-20 103.6 585 24.6
Cpa.g.sc2.293 Carica papaya HOM05D007641 ORTHO05D007630 1.2e-19 102.8 241 35.7
Carub.0004s1164 Capsella rubella HOM05D001940 ORTHO05D007630 6.0e-19 100.5 462 26.0
Nitab4.5_0001868g0030 Nicotiana tabacum HOM05D014625 ORTHO05D007630 2.3e-18 98.6 740 24.1
Sp4g13010 Schrenkiella parvula HOM05D001940 ORTHO05D007630 3.9e-18 97.8 481 26.8
AT2G30480 Arabidopsis thaliana HOM05D001940 ORTHO05D007630 6.6e-18 97.1 371 27.5
AL4G25360 Arabidopsis lyrata HOM05D001940 ORTHO05D007630 8.6e-18 96.7 467 26.3
GSVIVG01024555001 Vitis vinifera HOM05D007641 ORTHO05D007630 8.6e-18 96.7 93 55.9
Hund18459 Selenicereus undatus HOM05D029401 ORTHO05D007630 7.3e-17 93.6 677 23.3
PSO017G1347 Papaver somniferum HOM05D007641 ORTHO05D007630 1.2e-16 92.8 200 32.5
BcaB02g10326 Brassica carinata HOM05D001940 ORTHO05D007630 3.6e-16 91.3 491 25.7
Thhalv10017756m.g Eutrema salsugineum HOM05D001940 ORTHO05D007630 1.8e-15 89.0 387 26.9
THA.LOC104815825 Tarenaya hassleriana HOM05D001940 ORTHO05D007630 9.0e-15 86.7 186 33.3
BcaC02g11137 Brassica carinata HOM05D001940 ORTHO05D007630 1.5e-14 85.9 435 26.9
CARHR123930 Cardamine hirsuta HOM05D001940 ORTHO05D007630 1.5e-14 85.9 173 35.8
Nitab4.5_0000002g0280 Nicotiana tabacum HOM05D014625 ORTHO05D007630 1.5e-14 85.9 388 25.3
FAN21G1070 Fragaria x ananassa HOM05D007641 ORTHO05D007630 2.2e-13 82.0 337 30.3
Ah.08g218910 Amaranthus hybridus HOM05D000020 ORTHO05D002192 1.1e-12 79.7 471 25.1
AUR62016518 Chenopodium quinoa HOM05D029401 ORTHO05D007630 1.9e-12 79.0 260 28.1
C04p20070 Brassica napus HOM05D001940 ORTHO05D007630 3.2e-12 78.2 132 37.9
BolC4t23545H Brassica oleracea HOM05D001940 ORTHO05D007630 3.2e-12 78.2 132 37.9
Ca_15060_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 3.2e-12 78.2 349 28.7
Gorai.002G184200 Gossypium raimondii HOM05D007641 ORTHO05D007630 4.2e-12 77.8 165 32.7
Gorai.002G193100 Gossypium raimondii HOM05D007641 ORTHO05D007630 5.4e-12 77.4 178 30.9
BraA05t20424Z Brassica rapa HOM05D001940 ORTHO05D007630 1.2e-11 76.3 132 37.9
A05p14980 Brassica napus HOM05D001940 ORTHO05D007630 1.6e-11 75.9 183 32.8
AUR62001158 Chenopodium quinoa HOM05D029401 ORTHO05D007630 4.6e-11 74.3 266 28.6
Glyma.11G198150 Glycine max HOM05D007641 ORTHO05D007630 7.8e-11 73.6 103 40.8
Nitab4.5_0001946g0060 Nicotiana tabacum HOM05D014625 ORTHO05D007630 1.1e-09 69.7 445 24.0
Gohir.D01G155850 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.9e-09 68.9 93 39.8
PGR102G3245 Punica granatum HOM05D007641 ORTHO05D007630 4.3e-09 67.8 135 31.9
PSO384G0550 Papaver somniferum HOM05D007641 ORTHO05D007630 7.3e-09 67.0 75 44.0
Ca_15061_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 2.1e-08 65.5 125 40.8
ATR1127G234 Amborella trichopoda HOM05D007641 ORTHO05D007630 1.4e-07 62.8 92 34.8
Cpa.g.sc2.294 Carica papaya HOM05D007641 ORTHO05D007630 4.5e-06 57.8 134 33.6
Os01g0167700 Oryza sativa ssp. japonica HOM05D052079 ORTHO05D007630 5.8e-06 57.4 366 22.1
PGSC0003DMG402006272 Solanum tuberosum HOM05D014625 ORTHO05D007630 9.9e-06 56.6 58 46.6


User provided reference genes

Program Settings