Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 0.0e+00 1308.5 673 100.0
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 1.6e-251 872.8 679 70.8
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 3.4e-241 838.6 675 68.0
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 2.3e-221 772.7 645 66.0
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 2.1e-190 669.8 678 57.1
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 5.8e-172 608.6 673 52.6
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.9e-170 603.6 675 52.0
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.1e-167 594.3 758 49.1
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 4.0e-165 585.9 678 50.6
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 2.4e-162 576.6 591 55.2
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 2.4e-157 560.1 710 48.6
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.3e-150 537.7 660 48.8
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.7e-145 520.0 712 47.1
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 1.8e-144 517.3 656 48.3
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 5.1e-144 515.8 728 46.3
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 8.7e-144 515.0 760 43.6
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 7.4e-143 511.9 767 43.4
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 2.8e-142 510.0 766 43.9
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 6.2e-142 508.8 549 55.2
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 1.8e-141 507.3 618 51.3
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 7.6e-140 501.9 672 45.8
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 7.6e-140 501.9 720 44.4
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 4.6e-137 492.7 554 51.3
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 6.0e-137 492.3 756 43.4
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 8.7e-136 488.4 581 52.2
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 6.3e-134 482.3 657 44.6
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.1e-133 481.5 656 44.1
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 4.5e-132 476.1 705 43.5
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 4.5e-132 476.1 756 42.6
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 7.6e-132 475.3 677 46.7
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.3e-131 474.6 627 44.5
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.3e-131 474.6 700 44.6
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.7e-131 474.2 627 44.7
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 2.9e-131 473.4 705 45.7
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 3.8e-131 473.0 629 45.3
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 6.5e-131 472.2 704 43.8
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 1.1e-130 471.5 714 43.1
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 1.1e-130 471.5 760 42.4
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.8e-128 464.2 718 44.3
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 6.7e-128 462.2 517 52.8
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 5.7e-127 459.1 823 40.9
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 2.8e-126 456.8 741 43.2
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 8.2e-126 455.3 693 43.0
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 8.2e-126 455.3 589 47.7
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 1.4e-125 454.5 597 46.7
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.4e-125 453.8 756 41.9
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 9.0e-125 451.8 756 41.7
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 2.0e-124 450.7 397 58.9
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 2.9e-123 446.8 645 45.4
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 3.8e-123 446.4 555 49.2
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.1e-122 444.9 406 60.6
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 1.1e-122 444.9 341 68.0
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 1.9e-122 444.1 682 43.3
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 3.2e-122 443.4 696 43.0
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 4.2e-122 443.0 698 44.4
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 7.2e-122 442.2 732 41.8
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 4.6e-121 439.5 553 49.7
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.8e-120 437.6 701 41.5
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 4.3e-119 433.0 446 54.0
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 8.2e-118 428.7 787 40.5
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.8e-117 427.6 547 47.9
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.5e-116 424.5 671 42.8
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 7.7e-116 422.2 770 38.1
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 1.9e-114 417.5 790 39.0
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 3.2e-114 416.8 792 39.0
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 5.5e-114 416.0 389 57.1
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.7e-113 412.9 362 59.4
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 4.7e-113 412.9 738 40.1
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 7.9e-113 412.1 353 59.5
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 1.4e-112 411.4 650 42.6
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 3.0e-112 410.2 715 40.6
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 3.0e-112 410.2 439 54.4
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 3.0e-112 410.2 576 44.6
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 3.9e-112 409.8 397 56.2
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 3.9e-112 409.8 793 39.0
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 6.7e-112 409.1 346 60.1
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 8.8e-112 408.7 645 40.6
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.0e-111 407.5 689 39.3
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 3.3e-111 406.8 741 40.2
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 4.4e-111 406.4 706 41.8
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.3e-110 404.8 817 37.2
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.7e-110 404.4 418 52.6
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 3.7e-110 403.3 346 60.1
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 5.9e-108 396.0 338 60.1
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 7.2e-106 389.0 340 61.5
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 2.0e-103 380.9 400 52.0
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 2.2e-102 377.5 307 63.8
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 4.8e-102 376.3 360 55.3
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 4.8e-102 376.3 360 55.3
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 6.3e-102 375.9 335 59.7
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.4e-101 374.0 362 56.1
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.4e-101 374.0 360 55.3
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 2.7e-100 370.5 357 55.5
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 7.7e-100 369.0 335 58.8
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.0e-99 368.6 311 61.1
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 2.1e-97 360.9 420 49.8
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 2.7e-97 360.5 360 54.2
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 4.7e-97 359.8 435 47.4
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 6.1e-97 359.4 308 60.1
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.0e-96 358.6 365 52.9
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 8.8e-96 355.5 397 50.9
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 2.0e-95 354.4 483 45.1
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 3.4e-95 353.6 691 37.5
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 9.8e-95 352.1 692 37.6
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 9.1e-93 345.5 397 50.1
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 5.2e-88 329.7 348 50.9
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 6.6e-83 312.8 348 49.7
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.6e-76 291.6 205 71.7
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 2.5e-74 284.3 243 62.1
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.3e-70 271.9 514 38.1
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 3.3e-66 257.3 271 48.3
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.5e-63 248.4 206 62.1
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 7.1e-61 239.6 304 46.4
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.0e-59 235.7 229 52.0
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 1.1e-58 232.3 363 36.1
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 7.3e-58 229.6 518 34.9
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 2.1e-57 228.0 325 42.5
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.9e-38 164.5 129 69.8
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 2.9e-38 164.5 206 48.5
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.6e-36 158.7 113 64.6
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 1.8e-32 145.2 157 53.5
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 6.9e-32 143.3 179 45.3
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 1.7e-30 138.7 149 51.7
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 6.2e-25 120.2 128 45.3
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 2.9e-22 111.3 106 54.7
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 4.2e-21 107.5 86 60.5
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 4.2e-21 107.5 83 66.3
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 9.3e-21 106.3 290 28.3
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 6.9e-16 90.1 62 69.4
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 5.9e-15 87.0 242 28.1
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 9.3e-13 79.7 59 67.8
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 9.3e-13 79.7 59 67.8
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.6e-12 79.0 57 70.2
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 6.3e-09 67.0 264 25.4


User provided reference genes

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