Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 6.5e-210 733.8 367 100.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 3.8e-178 628.2 375 85.3
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.0e-142 509.6 352 73.9
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 3.1e-135 485.7 383 65.8
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 3.4e-126 455.7 335 67.2
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 5.8e-126 454.9 367 63.8
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 2.2e-125 453.0 375 62.9
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 3.8e-125 452.2 362 63.0
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 3.5e-123 445.7 388 60.8
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 6.0e-123 444.9 360 62.8
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.3e-122 443.7 355 65.1
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 6.7e-122 441.4 365 61.9
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 4.3e-121 438.7 373 60.6
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 3.1e-119 432.6 368 60.6
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 3.1e-119 432.6 362 61.9
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 3.1e-119 432.6 386 59.1
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.0e-119 432.2 366 59.0
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 5.3e-119 431.8 362 61.6
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 6.9e-119 431.4 365 61.6
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.2e-118 430.6 362 61.6
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.5e-118 430.3 360 61.1
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 2.6e-118 429.5 367 60.8
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.1e-116 424.1 367 59.4
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.1e-116 424.1 367 59.4
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 3.2e-116 422.5 375 57.1
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 4.2e-116 422.2 359 60.4
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.6e-115 420.2 365 59.5
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 2.1e-115 419.9 356 59.0
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 2.1e-115 419.9 367 59.4
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 2.1e-115 419.9 334 61.4
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.7e-115 419.5 362 59.4
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 4.6e-115 418.7 369 58.8
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 6.0e-115 418.3 363 58.7
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 3.9e-114 415.6 336 60.4
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 6.7e-114 414.8 337 57.3
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 8.7e-114 414.5 388 58.2
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 4.3e-113 412.1 392 56.9
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 9.6e-113 411.0 376 54.8
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 6.3e-112 408.3 367 58.9
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.8e-111 406.8 294 64.6
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 3.1e-111 406.0 357 58.5
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 4.1e-111 405.6 336 60.1
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 6.9e-111 404.8 352 58.5
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 7.6e-110 401.4 337 60.5
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.0e-109 401.0 388 54.6
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 3.2e-108 396.0 314 66.9
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 5.5e-108 395.2 374 55.1
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.6e-107 393.7 349 59.0
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 6.1e-107 391.7 323 62.8
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 6.7e-106 388.3 366 56.6
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 6.7e-106 388.3 336 56.8
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.1e-105 387.5 333 57.4
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 2.5e-105 386.3 256 73.8
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 5.7e-105 385.2 359 57.9
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 2.2e-104 383.3 340 57.1
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 8.2e-104 381.3 378 54.2
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 8.2e-104 381.3 381 56.2
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.4e-103 380.6 360 55.6
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 1.8e-103 380.2 345 56.8
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.8e-103 380.2 386 52.3
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 1.8e-103 380.2 379 54.6
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 2.4e-103 379.8 381 55.9
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.3e-103 378.6 323 60.4
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.5e-102 377.1 420 51.2
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 1.1e-100 370.9 384 53.1
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 7.9e-99 364.8 273 64.1
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.0e-98 364.4 361 52.9
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.3e-98 363.2 331 57.1
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 5.1e-98 362.1 316 58.2
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 5.1e-98 362.1 364 50.8
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 6.7e-98 361.7 295 63.7
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.3e-96 357.5 364 51.6
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 2.8e-96 356.3 358 54.7
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 6.3e-96 355.1 361 52.4
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 1.1e-95 354.4 386 50.3
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 1.4e-95 354.0 379 50.7
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 1.8e-95 353.6 232 71.6
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 2.4e-95 353.2 360 50.6
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 5.3e-95 352.1 331 55.3
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 6.9e-95 351.7 368 49.7
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.5e-94 350.5 290 57.6
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 1.5e-94 350.5 350 49.7
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 2.0e-94 350.1 353 52.1
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 3.4e-94 349.4 379 50.4
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 7.7e-94 348.2 380 49.7
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 7.7e-94 348.2 351 51.3
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 1.0e-93 347.8 368 49.7
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 5.0e-93 345.5 366 50.3
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 5.0e-93 345.5 336 52.4
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.1e-92 344.4 378 49.7
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 2.5e-92 343.2 359 54.0
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.5e-92 342.0 355 50.1
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.9e-90 335.9 344 53.2
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 6.7e-90 335.1 303 56.4
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 2.0e-89 333.6 351 52.4
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.6e-89 333.2 371 48.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 7.4e-89 331.6 361 49.0
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.7e-88 330.5 344 52.3
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 4.2e-84 315.8 356 48.0
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.3e-80 304.3 273 54.2
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.7e-80 303.9 287 54.7
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 3.1e-79 299.7 362 46.7
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 2.7e-78 296.6 304 50.7
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 5.9e-78 295.4 279 52.3
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.9e-77 293.1 275 57.8
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 2.9e-77 293.1 361 44.0
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 8.5e-77 291.6 361 44.3
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.9e-76 290.4 302 50.7
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 3.2e-76 289.7 359 47.1
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 4.7e-75 285.8 307 48.2
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.7e-72 277.3 356 47.2
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.7e-69 267.3 346 42.5
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 6.5e-69 265.4 365 43.3
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 7.2e-68 261.9 278 44.6
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 1.2e-65 254.6 193 64.2
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.7e-61 240.7 188 59.6
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 1.1e-60 238.0 281 43.4
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 7.3e-60 235.3 265 50.2
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 1.6e-59 234.2 178 63.5
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 7.5e-57 225.3 184 57.6
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 7.5e-57 225.3 226 56.6
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 8.3e-48 195.3 144 61.1
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 5.6e-44 182.6 209 46.9
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 1.5e-41 174.5 198 52.0
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.7e-38 163.7 208 48.6
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 9.9e-33 145.2 112 61.6
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 2.2e-32 144.1 108 60.2
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 1.9e-31 141.0 108 57.4
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.7e-30 137.1 108 57.4
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.5e-30 136.7 137 52.6
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 5.2e-26 122.9 108 55.6
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.5e-25 121.3 123 50.4
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 7.6e-25 119.0 86 65.1
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.4e-24 115.5 101 53.5
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.9e-23 114.4 109 57.8
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 2.4e-23 114.0 147 53.1
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 9.3e-23 112.1 77 68.8
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.7e-21 107.8 91 58.2
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 2.0e-17 94.4 85 47.1
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 3.1e-10 70.5 92 58.7
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 3.8e-08 63.5 111 48.6
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 2.7e-06 57.4 68 54.4
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 3.5e-06 57.0 42 61.9


User provided reference genes

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