Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 1.9e-143 512.7 291 100.0
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.1e-98 364.0 267 78.7
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.0e-69 267.7 256 64.8
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 2.0e-65 253.4 254 59.4
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 1.4e-58 230.7 285 56.1
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 8.9e-53 211.5 246 52.4
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.2e-52 211.1 248 51.6
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 4.4e-52 209.1 262 54.2
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 7.5e-52 208.4 257 51.0
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 6.4e-51 205.3 261 51.3
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.4e-50 204.1 253 50.6
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 2.7e-49 199.9 207 59.4
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 7.8e-49 198.4 268 48.5
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 7.8e-49 198.4 275 48.4
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.7e-48 197.2 266 48.9
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 7.3e-47 191.8 257 48.2
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 9.5e-47 191.4 242 47.5
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 1.8e-45 187.2 248 50.0
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 2.3e-45 186.8 256 46.1
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.5e-44 184.1 270 47.4
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 9.9e-44 181.4 267 46.1
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 2.9e-43 179.9 247 49.8
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 3.2e-42 176.4 257 45.5
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 3.2e-42 176.4 253 48.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.6e-41 174.1 262 46.9
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 3.0e-40 169.9 259 45.9
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 6.6e-40 168.7 308 39.6
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 2.5e-39 166.8 248 47.6
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 6.2e-38 162.2 249 45.8
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 6.2e-38 162.2 238 47.5
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 6.2e-38 162.2 242 46.3
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 5.2e-37 159.1 269 43.9
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 1.2e-36 157.9 254 44.5
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 3.4e-36 156.4 258 45.7
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 9.9e-36 154.8 260 42.7
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.7e-35 154.1 140 60.7
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.7e-35 154.1 140 60.7
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 2.2e-35 153.7 268 42.9
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 6.0e-33 145.6 217 42.9
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.0e-32 144.8 271 39.5
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 1.0e-32 144.8 237 42.6
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 1.9e-31 140.6 260 43.5
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 5.6e-31 139.0 113 58.4
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 2.1e-30 137.1 219 46.1
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 1.8e-29 134.0 255 37.3
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 3.2e-26 123.2 91 63.7
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 4.3e-23 112.8 109 55.0
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 4.8e-22 109.4 106 64.2
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 1.2e-20 104.8 87 60.9
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 4.5e-20 102.8 267 34.5
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 1.2e-17 94.7 104 53.8
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 4.6e-17 92.8 129 44.2
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 1.8e-13 80.9 261 33.3
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.9e-11 72.8 88 42.0
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 4.9e-11 72.8 116 39.7
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 6.5e-11 72.4 97 43.3
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.9e-10 70.9 172 33.1
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.9e-10 70.9 91 39.6
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 2.5e-10 70.5 110 40.9
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 3.2e-10 70.1 109 41.3
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 3.2e-10 70.1 126 36.5
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 4.2e-10 69.7 179 31.8
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 5.5e-10 69.3 110 33.6
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 7.1e-10 68.9 80 45.0
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 9.3e-10 68.6 78 48.7
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 9.3e-10 68.6 90 40.0
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 9.3e-10 68.6 74 51.4
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 9.3e-10 68.6 107 39.3
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.2e-09 68.2 71 46.5
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.1e-09 67.4 104 38.5
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.7e-09 67.0 78 47.4
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.7e-09 67.0 95 40.0
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.7e-09 67.0 190 30.0
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.7e-09 67.0 116 34.5
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 3.5e-09 66.6 87 40.2
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 6.0e-09 65.9 101 41.6
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 6.0e-09 65.9 116 35.3
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 7.9e-09 65.5 56 51.8
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 7.9e-09 65.5 116 34.5
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 7.9e-09 65.5 186 33.3
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 7.9e-09 65.5 172 30.8
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.0e-08 65.1 88 37.5
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.0e-08 65.1 89 40.4
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.0e-08 65.1 56 53.6
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.3e-08 64.7 93 35.5
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.3e-08 64.7 77 45.5
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.3e-08 64.7 56 53.6
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.3e-08 64.7 77 46.8
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.8e-08 64.3 183 31.7
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.8e-08 64.3 93 37.6
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.8e-08 64.3 134 38.1
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.8e-08 64.3 59 50.8
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.8e-08 64.3 188 31.4
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.8e-08 64.3 132 34.1
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 2.3e-08 63.9 90 45.6
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 2.3e-08 63.9 90 45.6
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 2.3e-08 63.9 90 45.6
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 2.3e-08 63.9 82 43.9
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.3e-08 63.9 70 47.1
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 2.3e-08 63.9 169 32.5
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 3.0e-08 63.5 105 39.0
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 3.0e-08 63.5 202 29.2
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 3.0e-08 63.5 74 43.2
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 3.0e-08 63.5 210 28.1
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.9e-08 63.2 79 41.8
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 3.9e-08 63.2 77 44.2
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.9e-08 63.2 77 44.2
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.9e-08 63.2 107 35.5
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.9e-08 63.2 107 35.5
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 5.1e-08 62.8 108 39.8
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 6.7e-08 62.4 167 32.3
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 6.7e-08 62.4 108 38.9
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 8.7e-08 62.0 126 34.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 8.7e-08 62.0 74 41.9
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.1e-07 61.6 69 44.9
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.1e-07 61.6 77 44.2
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.1e-07 61.6 203 29.1
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.1e-07 61.6 175 33.1
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.1e-07 61.6 196 28.6
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.1e-07 61.6 161 34.8
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.5e-07 61.2 67 44.8
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.5e-07 61.2 105 38.1
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.5e-07 61.2 170 33.5
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.5e-07 61.2 183 31.7
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.9e-07 60.8 133 32.3
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.9e-07 60.8 159 31.4
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 2.5e-07 60.5 174 33.3
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 3.3e-07 60.1 191 30.9
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 3.3e-07 60.1 94 33.0
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 3.3e-07 60.1 222 29.3
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 4.3e-07 59.7 199 32.7
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 4.3e-07 59.7 199 29.1
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.3e-07 59.7 77 44.2
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.3e-07 59.7 189 30.2
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 4.3e-07 59.7 187 28.3
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 4.3e-07 59.7 191 30.4
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 5.7e-07 59.3 222 28.8
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.6e-07 58.5 167 31.1
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 9.6e-07 58.5 177 33.3
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 9.6e-07 58.5 197 31.5
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.3e-06 58.2 92 41.3
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.3e-06 58.2 71 46.5
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.3e-06 58.2 234 28.2
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.3e-06 58.2 172 30.2
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.3e-06 58.2 79 39.2
CSS0036166 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.6e-06 57.8 47 59.6
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 1.6e-06 57.8 169 30.8
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.6e-06 57.8 186 31.2
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.6e-06 57.8 186 30.6
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 2.1e-06 57.4 189 27.5
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.1e-06 57.4 204 27.0
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.8e-06 57.0 69 40.6
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 3.7e-06 56.6 194 29.9
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 3.7e-06 56.6 196 28.6
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 3.7e-06 56.6 188 29.3
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 3.7e-06 56.6 203 26.6
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 4.8e-06 56.2 176 28.4
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 4.8e-06 56.2 59 47.5
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.2e-06 55.8 209 28.7
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 6.2e-06 55.8 187 26.7
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 6.2e-06 55.8 163 30.7
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 8.2e-06 55.5 220 28.2
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 8.2e-06 55.5 198 27.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 8.2e-06 55.5 183 29.5
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 8.2e-06 55.5 177 26.6


User provided reference genes

Program Settings